genome.fa.s3.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  69  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24797018--24797065	9	5.1	9	77	7	51	14	2	2	81	0.88
24797003--24797069	30	2.3	28	80	10	80	19	2	1	76	1.00
24796996--24797068	8	9.9	7	75	18	51	19	2	1	76	0.98
24797227--24797254	3	9.3	3	100	0	56	32	0	0	67	0.91
24802720--24802812	47	2.0	47	85	4	125	39	15	13	31	1.86
24821971--24822037	33	2.0	33	100	0	134	14	19	23	41	1.89
24832107--24832190	42	2.0	42	92	0	141	28	20	14	36	1.91
24834254--24834329	38	2.0	38	87	7	111	38	9	11	40	1.74
24836433--24836457	12	2.1	12	100	0	50	40	0	32	28	1.57
24837745--24837777	14	2.3	15	85	15	52	15	3	0	81	0.80
24839273--24839318	15	2.9	17	78	15	62	50	0	4	45	1.21
24839365--24839403	20	2.0	20	89	0	60	51	0	5	43	1.24
24839369--24839420	16	3.4	15	76	12	52	53	0	1	44	1.11
24846726--24846771	2	23.0	2	100	0	92	50	0	0	50	1.00
24864688--24864731	9	4.9	9	77	0	52	79	0	18	2	0.83
24864690--24864734	20	2.2	20	88	7	65	82	0	15	2	0.77
24864690--24864747	22	2.7	23	85	15	72	77	0	17	5	0.94
24868011--24868058	19	2.6	19	90	3	71	60	0	2	37	1.09
24868009--24868076	33	2.0	32	83	8	82	55	0	2	41	1.15
24869285--24869349	4	17.2	4	72	12	57	0	35	0	64	0.94
24869289--24869368	11	7.7	11	70	17	64	0	37	0	62	0.95
24869283--24869384	7	13.4	8	78	12	81	0	38	0	60	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24869273--24869378	15	6.6	15	79	17	74	0	36	0	62	1.02
24870453--24870500	18	2.6	19	90	3	71	37	4	0	58	1.18
24871125--24871213	43	2.1	43	100	0	178	46	13	15	24	1.82
24876687--24876711	2	12.5	2	100	0	50	48	0	0	52	1.00
24886527--24886567	18	2.3	18	91	0	64	85	0	0	14	0.60
24886527--24886567	17	2.4	17	91	0	64	85	0	0	14	0.60
24886803--24886921	48	2.4	49	80	5	136	39	1	5	53	1.33
24886871--24886910	21	1.9	21	84	0	53	45	2	2	50	1.28
24899710--24899745	5	7.8	5	93	6	51	0	0	13	86	0.58
24903705--24903734	15	2.0	15	93	0	51	20	10	0	70	1.16
24924590--24924617	5	5.6	5	100	0	56	60	17	0	21	1.36
24925173--24925211	5	7.8	5	94	0	69	0	23	0	76	0.78
24930276--24930309	2	17.0	2	93	0	59	47	0	2	50	1.16
24938850--24938880	3	10.3	3	92	0	53	61	0	38	0	0.96
24957630--24957692	27	2.3	27	78	5	74	44	1	0	53	1.10
24963520--24965114	505	3.2	499	80	4	1793	35	13	6	45	1.69
24965390--24966808	254	5.6	252	83	4	1545	44	7	13	34	1.72
24965188--24966808	759	2.1	768	83	4	2011	44	7	13	34	1.72
24976757--24976793	2	20.0	2	84	15	53	51	0	0	48	1.00
24987637--24987670	9	3.8	9	88	0	50	23	0	8	67	1.18
24988282--24988335	26	2.1	26	96	0	99	40	14	5	38	1.70
24990178--24990221	24	1.9	24	86	9	65	72	2	6	18	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24994944--24994982	2	19.5	2	94	0	69	48	0	2	48	1.15
24995177--24995205	3	9.7	3	100	0	58	68	0	0	31	0.89
25006356--25006400	24	1.9	23	82	13	56	8	15	2	73	1.18
25007759--25007820	28	2.4	25	75	8	61	51	9	4	33	1.56
25028140--25028197	21	2.7	22	86	5	91	20	8	24	46	1.78
25028249--25028290	21	2.0	21	85	0	57	35	28	14	21	1.92
25028679--25028718	12	3.1	12	89	10	53	65	0	0	35	0.93
25029153--25029217	24	2.8	23	84	11	71	72	3	4	20	1.16
25033035--25033091	23	2.5	23	97	0	105	35	28	14	22	1.93
25033081--25033231	65	2.3	65	80	6	164	45	19	9	25	1.81
25033081--25033230	22	6.9	22	72	7	101	45	18	10	26	1.81
25033140--25033223	43	2.0	43	83	4	107	44	16	11	27	1.83
25036301--25036346	18	2.6	18	96	0	83	15	13	39	32	1.85
25038927--25039021	29	3.2	29	77	1	73	21	25	6	47	1.74
25043173--25043208	19	1.9	18	94	5	63	41	0	0	58	0.98
25043344--25043403	14	4.4	14	74	15	54	60	1	3	35	1.23
25050043--25050127	22	3.9	21	78	6	71	22	10	22	44	1.83
25050057--25050111	21	2.5	22	85	5	85	23	9	20	47	1.78
25050244--25050348	43	2.4	43	79	0	102	44	22	10	21	1.83
25050279--25050358	22	3.7	22	78	6	83	46	26	10	17	1.79
25057667--25057716	22	2.3	22	83	13	59	48	4	0	48	1.20
25058933--25058981	17	2.9	17	90	0	80	55	0	14	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25067511--25067553	2	22.0	2	95	4	79	51	0	0	48	1.00
25068000--25068062	26	2.4	27	84	10	85	0	22	0	77	0.76
25068010--25068058	11	4.3	11	86	5	62	0	18	0	81	0.69
25068000--25068052	6	8.7	6	84	16	65	0	18	0	81	0.70
25068757--25068818	16	3.9	16	71	10	56	20	1	1	75	0.97
25068790--25068818	15	1.9	15	100	0	58	13	0	3	82	0.79
25068740--25068826	32	2.6	32	73	14	86	19	2	1	77	0.95
25072834--25072877	17	2.6	17	81	0	52	36	4	2	56	1.32
25074187--25074220	10	3.6	10	84	15	54	17	0	0	82	0.67
25075132--25075211	29	2.8	29	94	3	135	27	15	12	45	1.82
25078805--25078864	29	2.1	29	90	0	93	21	23	16	38	1.93
25085584--25085662	30	2.5	31	84	11	101	58	5	0	36	1.20
25085684--25085715	16	2.0	16	100	0	64	31	0	12	56	1.37
25097262--25097286	13	1.9	13	100	0	50	64	0	0	36	0.94
25097688--25097735	25	1.9	25	84	16	64	35	4	0	60	1.16
25099659--25099699	21	1.9	22	85	14	59	41	2	2	53	1.27
25111561--25111654	27	3.2	31	61	25	76	32	27	14	24	1.95
25111550--25111665	57	2.0	57	100	0	232	31	25	17	25	1.97
25120691--25120722	2	16.0	2	93	0	55	46	0	3	50	1.17
25130519--25130543	13	1.9	13	100	0	50	48	8	0	44	1.32
25131781--25131817	19	1.9	19	100	0	74	43	29	0	27	1.55
25145331--25145357	12	2.2	12	100	0	54	0	7	0	92	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25159694--25159739	23	2.0	23	91	0	74	36	13	10	39	1.79
25177538--25177587	21	2.3	20	83	10	55	56	0	0	44	0.99
25178026--25178764	155	4.7	155	87	5	1049	23	8	14	53	1.67
25178264--25178379	60	1.9	60	89	3	180	18	9	16	55	1.68
25178425--25178539	59	1.9	60	87	5	171	20	10	14	54	1.69
25178030--25178749	316	2.3	315	87	6	1038	23	8	14	54	1.67
25178580--25178701	59	2.0	62	85	9	171	19	9	14	56	1.65
25179422--25179481	27	2.2	27	85	5	77	41	13	15	30	1.85
25182430--25182470	21	1.9	22	90	5	66	51	7	24	17	1.70
25182430--25182474	20	2.2	21	84	11	58	55	6	22	15	1.63
25182428--25182475	21	2.3	20	79	10	60	56	6	22	14	1.61
25204572--25204605	16	2.1	16	88	0	50	52	2	0	44	1.16
25207383--25207481	50	2.0	49	84	5	128	32	13	12	42	1.81
25211333--25211371	20	1.9	20	84	5	51	64	2	30	2	1.21
25217903--25217942	15	2.7	15	88	3	55	30	0	2	67	1.04
25218817--25218879	31	2.0	31	93	0	108	25	11	14	49	1.76
25220191--25220244	2	26.5	2	80	10	56	42	3	5	48	1.44
25221543--25221592	2	25.5	2	95	4	93	48	0	0	52	1.00
25224709--25224798	30	3.0	30	93	0	153	46	17	27	7	1.76
25225137--25225161	12	2.1	12	100	0	50	24	16	20	40	1.91
25226584--25226639	27	2.1	27	83	6	69	28	19	32	19	1.97
25226612--25226716	54	1.9	54	80	0	120	35	22	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25236073--25236139	22	3.2	22	68	20	70	44	5	10	38	1.63
25236078--25236141	20	3.2	20	67	20	60	48	6	9	35	1.61
25236057--25236141	41	2.1	41	95	0	152	48	7	8	36	1.60
25236125--25236221	30	3.3	30	78	9	92	35	9	7	48	1.63
25236160--25236231	30	2.4	29	79	9	81	36	6	6	50	1.57
25240954--25241028	16	4.8	16	66	15	50	41	9	4	45	1.55
25241915--25241974	30	2.0	30	93	0	102	33	3	3	60	1.30
25247501--25247547	19	2.5	19	82	6	51	59	0	2	38	1.09
25251317--25251353	17	2.2	17	100	0	74	81	0	0	18	0.70
25255348--25255401	24	2.3	24	83	3	65	40	14	7	37	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91