genome.fa.s3.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  91  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889169--35889200	2	16.0	2	100	0	64	50	0	0	50	1.00
35893416--35893449	16	2.1	17	88	5	52	55	0	0	44	0.99
35896277--35896302	6	4.3	6	100	0	52	30	0	0	69	0.89
35897980--35898014	18	1.9	18	94	0	61	45	0	0	54	0.99
35899247--35899271	3	8.3	3	100	0	50	64	0	0	36	0.94
35900367--35900467	20	4.5	23	77	13	79	46	0	0	52	1.07
35900405--35900467	21	2.7	26	83	11	75	44	0	0	55	0.99
35900452--35900484	17	2.0	17	88	5	50	48	0	3	48	1.17
35901038--35901161	63	2.0	63	93	0	212	47	13	19	19	1.82
35904996--35905075	36	2.2	36	97	0	151	45	17	30	7	1.76
35905032--35905189	48	3.4	48	85	2	205	46	12	31	9	1.73
35905155--35905225	21	3.2	21	62	11	52	52	8	30	8	1.62
35905124--35905230	45	2.4	45	95	0	187	50	10	28	10	1.69
35905163--35905235	24	3.2	24	61	23	57	52	8	31	8	1.61
35906019--35906149	30	4.4	30	87	0	181	45	18	28	8	1.78
35906019--35906149	60	2.2	60	97	0	244	45	18	28	8	1.78
35908081--35908129	21	2.3	21	82	6	55	42	0	4	53	1.20
35926345--35926375	7	4.4	7	95	0	53	0	22	29	48	1.51
35926345--35926382	14	2.7	14	87	0	58	0	21	26	52	1.47
35927897--35927941	19	2.3	20	81	7	58	71	11	17	0	1.14
35936038--35936113	36	2.1	37	87	2	109	42	11	10	35	1.76
35940722--35940782	24	2.4	25	79	12	72	50	0	3	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35943319--35943419	50	2.0	50	94	0	175	34	7	15	41	1.77
35951840--35951899	2	31.0	2	83	12	81	0	46	0	51	1.01
35963564--35963799	117	2.0	117	98	0	454	29	22	25	22	1.99
35965484--35965554	30	2.4	30	97	0	133	54	5	8	30	1.53
35965542--35965604	14	4.4	14	75	15	58	66	3	1	28	1.16
35985587--35985619	2	16.5	2	100	0	66	0	48	0	51	1.00
35999241--35999435	89	2.2	88	82	11	238	39	1	2	56	1.20
35999497--35999558	33	1.9	32	86	3	88	30	0	1	67	1.00
35999708--35999759	25	2.1	25	89	7	79	50	0	0	50	1.00
35999689--35999750	31	1.9	32	84	12	83	45	0	1	53	1.10
36023878--36023925	16	3.1	15	74	11	51	39	2	2	56	1.23
36026106--36026144	2	19.5	2	83	0	51	46	2	2	48	1.29
36040203--36040245	3	14.3	3	83	9	52	65	4	30	0	1.13
36056573--36056650	27	2.7	29	80	11	97	16	34	19	29	1.94
36056593--36056654	27	2.3	27	97	0	115	12	30	24	32	1.93
36056910--36056984	24	3.1	24	96	0	132	37	13	29	20	1.90
36074627--36074669	2	21.5	2	100	0	86	51	0	0	48	1.00
36081806--36082413	328	1.8	330	83	5	794	35	9	6	48	1.62
36083113--36083156	17	2.5	19	82	14	58	22	9	15	52	1.71
36098563--36098614	21	2.5	22	93	6	83	55	0	0	44	0.99
36107115--36107184	30	2.3	30	90	0	104	52	7	7	32	1.56
36123929--36123973	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36129565--36129652	42	2.0	44	87	8	128	43	12	23	20	1.86
36132986--36133069	41	2.0	41	83	0	105	36	2	16	44	1.61
36133648--36133683	18	1.9	19	88	5	56	72	0	2	25	0.98
36133661--36133702	21	2.0	22	85	4	59	71	0	0	28	0.86
36143161--36143194	16	2.1	17	88	5	52	20	0	5	73	1.04
36143888--36143937	26	1.9	26	95	0	91	28	12	18	42	1.85
36143921--36143986	23	2.8	24	81	6	82	25	9	27	37	1.86
36152522--36152558	18	2.1	18	94	0	65	35	24	29	10	1.89
36156912--36156941	2	15.0	2	100	0	60	50	0	50	0	1.00
36161454--36161483	4	7.5	4	100	0	60	23	0	26	50	1.50
36182236--36182313	33	2.4	33	85	8	106	33	5	16	44	1.70
36184345--36184369	6	4.2	6	100	0	50	32	0	52	16	1.44
36192136--36192161	7	3.7	7	100	0	52	46	11	15	26	1.80
36203124--36203164	12	3.2	12	86	6	55	73	0	0	26	0.84
36203131--36203178	15	3.3	14	91	8	78	77	0	2	20	0.88
36220220--36220259	17	2.5	16	88	8	55	32	0	0	67	0.91
36220243--36220277	14	2.5	14	85	0	52	22	0	0	77	0.78
36228156--36228183	13	2.2	13	100	0	56	71	7	0	21	1.09
36241050--36241110	2	30.5	2	93	6	106	50	1	0	47	1.10
36248996--36249038	2	21.5	2	95	0	77	48	2	0	48	1.14
36249938--36250001	33	1.9	33	83	0	83	28	10	14	46	1.77
36269092--36269197	46	2.3	46	91	0	167	18	21	8	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36275081--36275261	90	2.0	90	100	0	362	40	13	23	23	1.89
36278305--36278344	20	2.0	20	85	5	53	35	5	20	40	1.74
36288851--36288905	16	3.4	16	73	14	51	50	0	1	47	1.11
36289195--36289221	14	1.9	14	100	0	54	37	0	7	55	1.28
36297298--36297448	77	2.0	77	90	5	243	35	38	4	21	1.75
36298535--36298581	24	2.0	24	100	0	94	51	21	14	12	1.76
36314791--36314987	109	1.8	105	80	8	236	49	7	6	37	1.56
36316955--36317006	26	2.0	27	84	3	70	55	9	25	9	1.62
36318192--36318237	19	2.4	19	100	0	92	36	10	0	52	1.37
36318797--36318845	15	3.2	15	81	13	55	69	2	6	22	1.21
36318981--36319074	49	1.9	48	82	6	118	50	1	1	47	1.15
36321836--36321861	9	2.9	9	100	0	52	19	69	0	11	1.18
36324156--36324267	55	2.0	55	87	3	163	25	7	12	54	1.63
36332891--36332935	20	2.1	23	80	16	60	33	0	2	64	1.06
36332885--36332949	31	2.0	33	82	5	80	33	3	1	61	1.21
36340908--36340951	23	2.0	21	86	8	61	54	27	9	9	1.62
36342882--36342931	25	2.0	25	88	7	75	20	8	30	42	1.80
36346854--36346888	15	2.4	14	90	4	52	45	2	0	51	1.16
36347485--36347635	80	1.9	80	92	0	257	31	16	23	27	1.96
36348400--36348469	33	2.1	33	87	10	99	71	2	1	24	1.08
36348392--36348470	25	3.0	24	75	22	63	70	2	1	25	1.07
36348488--36348535	13	3.7	13	78	10	53	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36348491--36348622	67	2.0	67	79	8	144	62	0	4	31	1.20
36348793--36348850	15	3.9	15	93	0	89	32	27	8	31	1.87
36349985--36350139	7	21.9	7	78	10	109	11	0	50	37	1.39
36349986--36350102	20	5.6	21	79	9	114	7	0	53	38	1.30
36350873--36350923	7	7.6	7	84	4	52	19	0	43	37	1.51
36357207--36357413	7	30.3	7	73	13	112	13	0	47	38	1.47
36357364--36357401	20	1.9	20	94	0	67	10	0	47	42	1.38
36357308--36357411	27	4.0	26	70	16	83	9	0	52	36	1.41
36364177--36364294	32	3.6	34	87	10	165	21	0	9	69	1.16
36364166--36364294	5	27.0	5	87	12	125	20	0	10	68	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91

The End!