genome.fa.s3.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  89  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34848618--34848685	15	4.5	15	77	1	73	41	5	1	51	1.35
34848618--34848685	30	2.2	30	84	7	84	41	5	1	51	1.35
34849315--34849363	17	2.8	18	81	6	64	4	6	12	77	1.09
34872114--34872138	2	12.5	2	100	0	50	0	48	0	52	1.00
34877753--34877802	25	2.0	26	92	4	84	56	0	2	42	1.11
34883571--34883631	18	3.4	18	73	13	63	55	6	1	36	1.36
34883575--34883652	35	2.2	35	86	0	111	50	10	2	37	1.50
34893653--34893710	26	2.3	26	82	14	68	65	1	0	32	1.03
34893650--34893737	21	3.8	22	79	18	81	68	1	0	30	0.97
34911297--34911485	90	2.1	90	91	0	306	33	20	23	22	1.97
34911876--34911919	18	2.4	18	80	0	52	25	27	43	4	1.74
34912231--34912280	2	27.0	2	80	15	63	48	0	0	52	1.00
34912231--34912280	12	4.0	13	84	10	77	48	0	0	52	1.00
34912316--34912362	2	24.5	2	91	8	80	46	0	0	53	1.00
34912314--34912362	21	2.3	21	100	0	98	46	0	0	53	1.00
34917386--34917484	36	3.0	31	75	13	90	36	26	18	19	1.94
34922536--34922691	79	2.0	79	89	2	242	41	28	9	21	1.84
34926276--34926423	79	1.9	79	95	0	269	38	30	8	22	1.84
34934882--34934940	28	2.1	28	96	3	111	16	30	3	49	1.63
34943039--34943138	41	2.4	41	86	3	130	33	38	7	22	1.81
34944249--34944360	52	2.2	51	91	1	179	53	18	14	13	1.72
34948937--34949246	157	2.0	157	89	0	476	38	25	14	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34949849--34949896	21	2.3	22	82	13	66	6	18	0	75	1.01
34949867--34949919	9	6.1	8	77	14	52	1	16	1	79	0.92
34949849--34949917	21	3.5	21	80	7	65	4	17	1	76	1.02
34951309--34951348	8	4.9	8	81	6	53	20	0	0	80	0.72
34952771--34952824	9	6.3	9	75	16	53	72	0	25	1	0.95
34952771--34952818	24	2.0	23	88	4	69	72	0	25	2	0.95
34958639--34958710	2	36.0	2	100	0	144	50	0	0	50	1.00
34959831--34959856	12	2.2	12	100	0	52	34	15	0	50	1.45
34967607--34967655	6	8.2	6	97	0	71	40	42	16	0	1.48
34967664--34967693	9	3.3	9	90	0	51	33	60	0	6	1.23
34967672--34967706	15	2.3	15	90	0	52	28	60	5	5	1.43
34974581--34974658	30	2.6	29	82	8	84	41	10	1	47	1.46
34974585--34974658	15	4.9	15	75	6	69	40	10	1	47	1.47
34993073--34993316	72	3.3	72	82	7	269	41	9	31	17	1.82
34993126--34993307	75	2.5	75	88	4	255	42	9	29	18	1.81
34993646--34993713	33	2.1	33	94	0	118	45	10	14	29	1.78
35006009--35006033	2	12.5	2	100	0	50	52	0	48	0	1.00
35007885--35007935	2	26.5	2	92	7	88	50	0	0	49	1.00
35017563--35017590	2	14.0	2	100	0	56	0	0	50	50	1.00
35022301--35022325	12	2.1	12	100	0	50	36	40	0	24	1.55
35027680--35027726	14	3.4	14	77	8	51	40	2	2	55	1.24
35027999--35028054	2	29.5	2	78	10	64	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35028791--35028839	22	2.2	23	78	10	57	57	0	0	42	0.99
35033608--35033638	3	10.3	3	92	0	53	67	3	0	29	1.06
35034053--35034137	42	2.0	42	95	0	152	27	41	14	17	1.88
35034608--35034649	15	2.5	18	81	14	54	57	0	35	7	1.26
35041391--35041467	27	2.8	28	84	4	102	35	18	16	29	1.93
35045090--35045151	21	3.2	21	65	21	62	75	1	8	12	1.07
35045088--35045163	37	2.1	34	92	7	125	73	3	7	13	1.18
35045415--35045463	19	2.5	20	93	6	91	51	0	4	44	1.20
35045498--35045530	16	2.1	17	88	11	52	60	0	9	30	1.27
35047857--35047890	18	2.0	16	88	11	50	29	0	0	70	0.87
35051973--35052025	24	2.2	25	83	10	65	62	0	0	37	0.96
35052545--35052626	28	2.9	27	76	15	85	40	1	0	58	1.06
35052548--35052676	29	4.4	29	84	1	152	41	2	2	54	1.26
35052548--35052676	59	2.2	57	87	2	177	41	2	2	54	1.26
35052934--35052977	18	2.4	18	81	7	54	38	2	0	59	1.10
35060992--35061321	169	2.0	169	93	0	561	39	12	12	36	1.80
35078022--35078090	23	3.1	22	89	4	77	39	2	5	52	1.41
35078037--35078090	23	2.3	23	96	0	99	38	1	3	55	1.28
35085769--35085806	3	12.7	3	94	0	67	34	31	34	0	1.58
35094260--35094294	6	5.8	6	96	0	61	11	34	0	54	1.37
35115204--35115229	8	3.2	8	100	0	52	11	0	0	88	0.52
35115260--35115289	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35115389--35115490	17	5.4	20	69	20	69	65	0	0	33	0.99
35115427--35115479	26	2.1	24	83	13	63	69	0	1	28	0.99
35115389--35115482	32	2.8	32	80	4	98	64	0	1	34	1.00
35115423--35115490	15	4.5	14	72	16	55	69	0	1	29	0.98
35115833--35115888	14	3.9	14	77	11	60	62	14	0	23	1.31
35115844--35115893	16	3.4	16	73	21	54	62	12	0	26	1.30
35115838--35115896	28	2.1	28	96	0	109	66	11	0	22	1.24
35115829--35115896	28	2.4	27	90	2	91	64	11	0	23	1.26
35125705--35125931	27	8.3	28	72	5	115	38	7	12	40	1.73
35125658--35125824	55	3.1	55	78	5	178	39	5	11	43	1.65
35125707--35125931	82	2.7	81	74	3	209	38	8	12	40	1.73
35125682--35125928	136	1.8	136	83	6	331	37	7	12	42	1.71
35139400--35139439	18	2.2	18	90	0	62	35	10	5	50	1.58
35139605--35139642	20	1.9	20	94	0	67	23	0	5	71	1.07
35165955--35166072	58	2.0	58	93	0	200	38	35	4	22	1.73
35173143--35173195	26	2.0	26	85	7	72	54	9	1	33	1.43
35174341--35174539	102	2.0	96	93	5	335	43	24	21	10	1.83
35178703--35178734	15	2.1	15	94	0	55	6	15	12	65	1.44
35180659--35180694	17	2.1	18	89	5	56	22	2	0	75	0.94
35181497--35181552	24	2.4	22	77	16	58	67	0	0	32	0.91
35181505--35181545	22	1.9	21	90	5	64	70	0	0	29	0.87
35193925--35193954	15	2.0	15	100	0	60	13	6	13	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35201611--35201637	2	13.5	2	100	0	54	48	0	0	51	1.00
35205605--35206854	626	2.0	630	96	1	2278	34	17	14	33	1.90
35206821--35206860	2	20.0	2	89	0	62	55	0	0	45	0.99
35212788--35212814	14	1.9	14	100	0	54	29	0	11	59	1.32
35214512--35214721	81	2.6	84	79	11	240	33	10	11	43	1.76
35214608--35214764	26	5.8	25	69	21	104	30	12	12	44	1.79
35214617--35214712	28	3.7	25	74	15	70	33	11	14	40	1.82
35214514--35214764	29	9.1	28	70	16	111	33	11	12	43	1.78
35214587--35214788	109	1.9	109	90	2	325	32	12	12	42	1.81
35214587--35214818	109	2.1	109	84	1	313	34	13	11	40	1.81
35214814--35214903	21	4.3	21	86	0	135	27	15	23	33	1.95
35214925--35214968	21	2.1	21	82	0	52	29	18	20	31	1.96
35220233--35220283	20	2.6	19	79	11	57	74	5	1	17	1.11
35220241--35220295	5	10.8	5	86	3	65	72	5	3	18	1.18
35225084--35225149	30	2.2	29	91	2	105	36	7	10	45	1.67
35225177--35225237	26	2.3	27	77	11	72	32	16	4	45	1.68
35225142--35225317	80	2.2	81	83	3	221	31	12	11	44	1.78
35225207--35225317	24	4.3	24	66	24	64	30	10	10	47	1.73
35225358--35225426	21	3.3	21	77	0	84	31	13	20	34	1.91
35225725--35225777	26	2.1	25	85	3	70	35	7	9	47	1.64
35231689--35231731	16	2.9	14	80	13	50	76	9	0	13	1.01
35236937--35236986	26	1.9	26	87	0	73	32	8	8	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35236931--35236993	26	2.5	25	79	5	72	30	6	7	55	1.54
35237025--35237081	21	2.7	21	80	0	69	31	15	19	33	1.93
35237006--35237660	178	3.7	177	75	6	597	31	12	19	36	1.89
35237808--35237847	21	1.9	21	94	0	71	32	17	20	30	1.95
35237962--35238022	21	2.9	21	80	0	68	32	16	19	31	1.94
35238075--35238129	21	2.6	21	76	0	65	30	12	23	32	1.92
35239091--35239132	16	2.6	16	81	11	50	45	0	0	54	0.99
35239106--35239139	2	17.5	2	87	6	52	47	0	0	52	1.00
35252310--35252348	19	2.1	19	85	9	53	28	0	0	71	0.86
35252310--35252348	15	2.6	14	88	8	51	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91