genome.fa.s3.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  64  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23141825--23141903	31	2.5	31	81	4	79	26	16	22	34	1.95
23145374--23145681	31	10.0	31	80	1	332	40	20	17	22	1.91
23146345--23146405	14	4.1	15	81	8	63	47	4	13	34	1.64
23146355--23146402	16	3.1	16	81	6	62	45	4	14	35	1.64
23146355--23146412	14	3.9	15	78	14	59	51	3	12	32	1.56
23147888--23148217	31	10.6	31	75	4	288	38	20	20	20	1.93
23147889--23148199	93	3.3	93	89	1	462	39	20	20	19	1.93
23148552--23148601	25	2.0	25	100	0	100	20	12	24	44	1.85
23148597--23148926	150	2.2	153	84	5	409	27	20	16	34	1.94
23150564--23150858	31	9.5	31	88	0	338	38	21	16	23	1.93
23150564--23150858	93	3.2	93	84	0	374	38	21	16	23	1.93
23151435--23151736	47	6.4	47	81	6	353	21	34	17	26	1.95
23151556--23151635	23	3.5	23	68	13	65	18	33	18	28	1.95
23151435--23151738	140	2.2	141	81	6	359	21	34	17	26	1.96
23151435--23151785	94	3.8	94	85	2	440	22	33	17	26	1.96
23156845--23156887	8	5.2	8	80	2	50	79	0	2	18	0.85
23178006--23178034	12	2.3	13	94	5	51	31	0	3	65	1.09
23179803--23179863	24	2.7	23	82	7	79	47	3	1	47	1.28
23181118--23181158	20	2.1	19	95	4	73	9	7	9	73	1.26
23181123--23181167	20	2.3	19	85	11	56	15	8	11	64	1.49
23183102--23183169	34	2.0	34	100	0	136	50	29	8	11	1.69
23190037--23190238	40	5.0	40	81	5	210	59	18	1	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23190037--23190238	41	5.0	41	80	6	205	59	18	1	20	1.46
23190127--23190180	27	2.0	26	85	3	72	61	20	1	16	1.44
23196775--23196799	13	1.9	13	100	0	50	44	0	8	48	1.32
23198449--23198506	29	2.0	29	100	0	116	37	20	10	31	1.86
23199314--23199355	14	2.9	15	82	7	59	38	9	47	4	1.57
23199580--23199653	30	2.4	30	82	6	87	45	1	1	51	1.18
23199788--23199820	16	2.1	17	88	11	52	39	0	6	54	1.25
23199831--23199874	15	2.8	16	79	10	54	54	0	6	38	1.27
23199839--23199874	15	2.5	15	90	4	56	50	0	5	44	1.25
23203264--23203301	15	2.5	15	84	16	51	42	0	2	55	1.14
23203327--23203355	15	2.0	15	93	6	51	48	0	6	44	1.29
23213295--23213319	13	1.9	13	100	0	50	48	8	0	44	1.32
23213952--23213989	19	2.0	19	94	0	67	28	0	28	42	1.56
23214647--23214679	2	16.5	2	93	0	57	45	0	0	54	0.99
23214645--23214684	12	3.2	12	89	3	62	40	0	2	57	1.12
23221012--23221234	42	5.2	42	74	16	215	41	8	5	44	1.57
23220989--23221240	42	5.9	43	74	17	204	39	8	6	45	1.60
23220998--23221240	86	2.8	86	92	0	396	40	8	5	44	1.59
23221458--23221515	29	2.0	29	82	0	71	44	1	8	44	1.44
23222453--23222504	27	1.9	27	92	0	86	32	5	23	38	1.78
23222595--23222732	23	5.8	23	72	5	87	28	11	19	40	1.86
23222595--23222753	48	3.3	47	79	3	165	28	11	19	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23226051--23226137	41	2.1	41	84	0	111	25	20	10	43	1.83
23226308--23226374	31	2.2	31	94	2	118	34	14	10	40	1.81
23226258--23226449	101	1.9	101	87	0	285	31	17	11	39	1.85
23226171--23226482	171	1.8	167	79	5	358	29	16	12	41	1.85
23226359--23226584	70	3.2	71	84	9	275	26	16	15	42	1.87
23226454--23226622	72	2.3	72	84	6	209	23	18	16	41	1.90
23227857--23227937	28	2.9	28	94	5	139	32	19	20	27	1.97
23233085--23234340	236	5.3	237	86	2	1618	36	20	13	29	1.91
23234420--23234454	13	2.6	14	90	9	63	82	17	0	0	0.66
23246458--23246495	20	1.9	20	94	0	67	50	2	0	47	1.15
23247112--23247208	23	4.2	23	89	2	158	30	8	27	32	1.86
23247112--23247210	47	2.1	47	92	1	164	30	9	27	33	1.88
23247346--23247393	22	2.2	22	88	0	69	37	8	43	10	1.69
23247449--23247537	25	3.4	25	87	4	124	50	12	20	16	1.77
23255080--23255114	15	2.3	15	90	9	54	5	5	5	82	0.93
23258392--23258425	2	17.0	2	100	0	68	0	50	0	50	1.00
23261947--23261998	2	26.5	2	88	3	79	48	0	1	50	1.12
23262927--23262975	18	2.8	18	90	3	73	42	20	10	26	1.84
23262977--23263008	10	3.1	10	91	8	55	28	9	18	43	1.81
23262977--23263008	11	3.0	11	95	4	57	28	9	18	43	1.81
23271405--23271465	17	3.8	16	72	24	56	44	0	1	54	1.10
23286016--23286061	20	2.3	20	96	0	83	45	21	4	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23287675--23287741	30	2.2	30	89	0	107	28	16	7	47	1.73
23289865--23289921	28	2.0	28	82	6	69	29	8	19	42	1.81
23299390--23299466	34	2.3	34	100	0	154	27	23	14	35	1.93
23302747--23302790	22	2.0	22	86	0	61	40	20	6	31	1.79
23305603--23305651	21	2.3	21	78	0	53	59	6	4	30	1.41
23311058--23311110	28	1.9	27	88	3	79	28	22	18	30	1.98
23311155--23311200	20	2.3	20	88	7	67	45	17	4	32	1.68
23322941--23322985	21	2.1	21	87	0	63	35	2	2	60	1.22
23322956--23322997	14	3.1	14	80	13	52	33	0	0	66	0.92
23327905--23327954	23	2.2	23	92	0	82	20	0	30	50	1.49
23328005--23328075	11	6.5	11	75	12	65	21	2	23	52	1.60
23331102--23331396	112	2.6	111	82	4	351	29	18	21	30	1.97
23331381--23331420	20	2.0	21	90	5	64	42	10	15	32	1.79
23331513--23331568	20	2.7	21	78	18	64	33	16	12	37	1.86
23333217--23333382	32	4.9	35	70	12	130	35	24	12	27	1.91
23333230--23333399	35	5.0	34	66	17	111	36	24	12	26	1.91
23333217--23333403	67	2.8	67	93	0	302	37	25	11	25	1.90
23333788--23333990	73	2.8	73	84	0	262	24	21	15	38	1.92
23336377--23336410	15	2.3	15	94	0	59	35	29	5	29	1.81
23339998--23340056	26	2.3	26	79	5	66	1	28	3	66	1.18
23342184--23342358	77	2.3	77	86	1	242	46	10	13	29	1.77
23345881--23345905	7	3.6	7	100	0	50	44	0	12	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23347479--23347659	34	5.1	34	73	15	127	19	15	25	39	1.91
23347572--23347659	33	2.6	34	86	10	128	18	19	27	35	1.95
23363031--23363105	26	2.7	27	71	16	73	50	5	9	34	1.57
23363651--23364696	357	3.0	352	87	4	1481	35	16	12	36	1.86
23365308--23365449	74	1.9	75	84	7	191	33	21	10	33	1.88
23378131--23378245	59	1.9	60	82	5	144	39	13	17	29	1.88
23381706--23381914	85	2.4	84	80	7	208	41	8	10	40	1.69
23382076--23382151	29	2.7	29	89	4	120	50	13	2	32	1.55
23382172--23382226	11	5.1	11	74	8	51	41	0	1	56	1.10
23382157--23382226	28	2.8	25	78	21	83	42	0	1	55	1.08
23382163--23382226	15	3.8	17	69	18	53	42	0	1	56	1.09
23382172--23382226	23	2.6	21	86	13	69	41	0	1	56	1.10
23382158--23382215	28	2.1	28	90	6	91	41	0	1	56	1.09
23382321--23382352	15	2.2	15	94	5	57	50	0	0	50	1.00
23382200--23382442	126	1.9	129	85	2	339	31	6	4	57	1.43
23382479--23382519	19	2.2	19	86	4	57	7	17	0	75	1.02
23403720--23403831	34	3.3	34	92	0	188	25	22	18	33	1.96
23404709--23405218	252	2.0	252	86	3	704	46	12	13	27	1.80
23408817--23408867	23	2.2	23	85	0	66	21	1	31	45	1.63
23408925--23408999	11	6.8	11	73	11	73	21	1	25	52	1.55
23408939--23408999	32	1.9	32	86	6	88	19	1	27	50	1.57
23412536--23412582	21	2.2	22	96	3	87	40	10	14	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23418115--23418158	16	2.8	15	83	16	54	27	6	6	59	1.49
23423044--23423102	30	2.0	30	89	0	91	32	10	15	42	1.80
23423638--23423668	16	1.9	16	93	0	53	22	6	6	64	1.40
23423675--23423699	2	12.5	2	100	0	50	0	48	0	52	1.00
23428836--23428891	2	29.0	2	84	13	73	1	46	0	51	1.11
23436193--23436246	23	2.4	23	84	9	67	77	3	7	11	1.09
23440723--23440954	119	1.9	119	100	0	464	38	12	17	31	1.88
23452957--23453003	17	2.7	18	80	12	53	2	44	0	53	1.12
23452974--23453011	17	2.2	18	90	4	60	0	47	0	52	1.00
23453827--23453859	6	5.5	6	96	0	57	0	51	3	45	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91