genome.fa.s3.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  87  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33573188--33573222	15	2.3	15	90	0	52	42	8	2	45	1.49
33573765--33573811	20	2.3	20	85	3	58	6	25	0	68	1.13
33573932--33573984	27	2.0	27	84	0	70	43	1	7	47	1.42
33574516--33574552	17	2.2	18	80	14	51	37	0	0	62	0.96
33595356--33595411	15	3.8	15	74	11	53	64	0	3	32	1.11
33595365--33595424	28	2.1	28	87	0	84	68	0	3	28	1.05
33595651--33595698	15	3.1	15	84	3	60	37	10	6	45	1.64
33607457--33607488	2	16.0	2	100	0	64	50	0	50	0	1.00
33610101--33610251	76	2.0	76	88	0	221	42	12	21	23	1.87
33620164--33620244	40	2.0	40	97	0	153	22	23	27	27	1.99
33622753--33622794	20	2.0	20	86	4	57	42	4	7	45	1.52
33625881--33625923	18	2.6	15	77	22	50	65	6	4	23	1.37
33634241--33634331	46	2.0	46	91	0	146	39	12	9	38	1.76
33635868--33635907	17	2.3	18	86	4	55	0	17	7	75	1.03
33635876--33635913	18	2.1	18	90	9	60	0	18	2	78	0.86
33635876--33635913	17	2.2	17	86	9	51	0	18	2	78	0.86
33638483--33638522	18	2.2	19	86	4	55	42	0	0	57	0.98
33648146--33648178	2	17.5	2	87	12	52	0	48	0	51	1.00
33649067--33649110	2	22.0	2	100	0	88	50	0	0	50	1.00
33661611--33661720	55	2.0	53	93	5	193	27	9	26	36	1.86
33662009--33662056	3	16.0	3	100	0	96	66	0	0	33	0.92
33662160--33662205	24	1.9	24	82	8	58	65	2	0	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33665167--33665222	29	1.9	29	82	7	69	26	10	3	58	1.48
33665232--33665344	2	58.5	2	74	16	87	46	0	5	46	1.31
33671376--33671411	18	2.0	18	88	0	54	52	0	2	44	1.15
33684865--33684914	19	2.5	19	80	6	55	38	0	0	62	0.96
33686502--33686531	16	1.9	15	93	6	51	50	0	0	50	1.00
33696489--33696581	27	3.4	27	89	0	114	25	18	33	22	1.97
33703895--33704001	50	2.1	50	82	3	126	52	12	11	24	1.71
33704405--33704434	10	3.0	10	90	0	51	60	6	13	20	1.55
33707907--33707981	24	3.2	23	77	11	80	53	5	1	40	1.32
33710284--33710328	2	22.5	2	100	0	90	48	0	51	0	1.00
33713393--33713433	21	2.0	21	90	0	64	73	4	0	21	1.02
33713551--33713632	21	3.8	22	68	24	66	54	2	0	42	1.13
33720676--33720734	31	1.9	31	89	0	91	49	5	16	28	1.67
33763617--33763736	49	2.4	49	94	0	204	32	27	15	25	1.95
33764128--33764169	3	14.0	3	100	0	84	33	33	0	33	1.58
33770416--33770449	15	2.1	17	89	10	54	67	0	0	32	0.91
33784126--33784166	10	3.8	11	84	12	50	43	0	0	56	0.99
33784215--33784277	31	2.0	31	82	11	76	23	0	9	66	1.21
33787119--33787143	2	12.5	2	100	0	50	52	0	0	48	1.00
33787618--33787656	18	2.2	18	90	0	69	23	5	10	58	1.49
33787810--33787898	29	2.9	29	85	6	97	35	11	13	39	1.80
33787915--33788305	45	8.8	45	82	3	387	29	18	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33787979--33788052	21	3.5	21	67	15	62	31	21	17	29	1.96
33788234--33788372	69	2.0	69	85	0	188	30	16	16	35	1.91
33788308--33788419	45	2.5	45	86	2	145	31	17	14	36	1.90
33788464--33788538	30	2.4	31	75	6	80	46	6	0	46	1.29
33802070--33802108	2	19.5	2	100	0	78	48	0	0	51	1.00
33810986--33811011	2	13.0	2	100	0	52	50	0	0	50	1.00
33811790--33811858	29	2.5	27	78	4	75	57	0	0	42	0.98
33811804--33811847	21	2.1	21	83	8	54	65	0	0	34	0.93
33811800--33811856	27	2.2	25	84	6	69	61	0	0	38	0.96
33817846--33817878	2	16.5	2	100	0	66	48	0	0	51	1.00
33819277--33819303	2	13.5	2	100	0	54	51	48	0	0	1.00
33821833--33821879	24	1.9	25	86	4	69	12	12	14	59	1.61
33830812--33830836	2	12.5	2	100	0	50	48	0	0	52	1.00
33831523--33831550	13	2.2	13	100	0	56	39	0	0	60	0.97
33842335--33842792	232	2.0	226	92	3	756	26	12	22	38	1.89
33851172--33851245	31	2.4	31	97	0	139	43	8	25	22	1.81
33852857--33852915	29	2.0	29	93	0	100	20	20	11	47	1.81
33857359--33857444	30	3.0	28	81	8	93	63	3	0	32	1.11
33857357--33857454	29	3.3	29	76	15	92	65	4	0	30	1.11
33858288--33858332	7	6.4	7	97	0	72	13	8	57	20	1.62
33888802--33888859	2	31.5	2	81	16	72	51	0	0	48	1.00
33888802--33888859	18	3.2	19	85	7	84	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33892277--33892452	40	4.2	42	68	20	111	38	1	1	59	1.15
33892347--33892776	26	16.8	26	65	21	101	40	2	2	55	1.25
33892322--33892414	22	4.4	22	74	14	72	39	1	1	58	1.13
33892237--33892427	86	2.2	86	81	11	219	42	1	1	54	1.16
33892447--33892505	27	2.1	28	84	3	75	38	5	3	52	1.40
33892437--33892796	125	3.1	120	78	10	374	39	1	2	55	1.25
33892574--33892630	27	2.2	26	87	6	80	42	0	7	50	1.29
33892561--33892764	111	1.9	109	84	6	277	39	0	3	55	1.25
33898224--33898302	22	3.4	22	77	16	86	58	0	1	40	1.06
33898242--33898293	27	1.9	27	92	7	88	57	0	1	40	1.10
33898372--33898431	28	2.1	28	81	6	68	50	5	1	43	1.34
33898214--33898470	131	2.0	130	86	5	367	56	3	1	38	1.26
33898420--33898451	16	2.1	16	94	5	57	65	0	0	34	0.93
33902048--33902169	30	4.2	28	75	17	101	66	0	1	31	1.02
33902086--33902121	17	2.1	18	94	5	65	75	0	0	25	0.81
33902054--33902180	55	2.3	55	81	15	154	66	0	1	31	1.01
33902406--33902450	15	3.0	15	80	0	54	40	22	0	37	1.54
33906263--33906376	59	2.0	57	85	3	156	42	6	2	49	1.41
33906551--33906603	19	2.8	18	78	21	56	24	3	0	71	1.02
33906980--33907026	19	2.5	19	86	10	62	34	0	2	63	1.06
33916662--33916714	16	3.2	16	83	5	52	56	7	16	18	1.63
33931617--33931646	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33946553--33946586	10	3.3	10	88	8	50	38	0	2	58	1.13
33952770--33952798	2	14.5	2	100	0	58	51	0	0	48	1.00
33955487--33955742	127	2.0	127	84	0	332	38	6	12	42	1.67
33958547--33958589	22	2.0	22	90	0	68	41	13	18	25	1.88
33958902--33958936	16	2.2	16	90	5	54	45	2	0	51	1.16
33958917--33958955	20	2.0	20	85	10	53	43	2	2	51	1.29
33958973--33959048	30	2.5	30	97	0	143	36	3	15	43	1.66
33971154--33971192	15	2.7	15	88	4	53	28	0	2	69	1.02
33978978--33979016	20	2.1	18	85	9	51	41	0	2	56	1.13
33985204--33985251	24	2.0	24	87	0	69	72	4	6	16	1.20
34039731--34039760	1	30.0	1	93	0	51	96	3	0	0	0.21
34042067--34042197	30	4.4	30	86	9	160	47	0	10	41	1.44
34052535--34052714	2	97.0	2	72	18	122	44	2	1	51	1.23
34059499--34059553	4	13.8	4	83	7	58	69	3	25	1	1.15
34061323--34061400	22	3.6	22	69	19	56	39	5	1	53	1.31
34061417--34061449	16	2.1	16	88	5	50	33	3	0	63	1.10
34062113--34062213	22	4.2	24	70	17	68	47	0	1	50	1.12
34083636--34083670	17	2.1	17	89	10	54	51	0	2	45	1.16
34084078--34084103	3	8.7	3	100	0	52	65	0	0	34	0.93
34092633--34092665	2	16.5	2	100	0	66	51	0	0	48	1.00
34105924--34106112	94	2.0	94	100	0	378	34	23	13	28	1.93
34106642--34106678	7	5.4	7	93	6	58	0	13	2	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34112741--34112779	13	2.9	14	84	7	53	38	7	0	53	1.30
34113324--34113366	21	2.0	22	90	4	70	58	0	4	37	1.19
34118157--34118277	57	2.1	57	89	1	181	28	19	28	23	1.99
34133095--34133179	6	14.3	6	79	7	75	47	11	1	40	1.48
34133095--34133163	24	2.9	24	89	2	95	46	14	1	37	1.54
34133122--34133201	2	41.0	2	75	5	74	46	7	1	45	1.39
34142618--34142649	3	10.7	3	100	0	64	65	0	0	34	0.93
34146459--34146496	17	2.2	17	86	9	51	39	5	5	50	1.48
34146710--34146743	17	1.9	17	88	5	50	23	2	0	73	0.97
34147918--34147962	22	2.1	21	91	4	72	57	0	0	42	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91