genome.fa.s3.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  57  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20398214--20398294	22	3.5	22	68	15	63	43	3	1	51	1.27
20397951--20398318	118	3.1	118	75	10	334	39	1	3	55	1.27
20398393--20398480	41	2.2	40	82	13	108	44	2	1	52	1.21
20399499--20399530	15	2.0	17	88	11	50	62	12	6	18	1.50
20403587--20403747	64	2.5	64	90	0	241	27	15	26	29	1.96
20405111--20405152	21	2.0	21	85	0	57	23	26	14	35	1.93
20405041--20405186	60	2.4	60	81	4	161	29	21	21	27	1.99
20405549--20405660	43	2.6	43	82	2	127	20	33	18	27	1.96
20407738--20408613	439	2.0	437	93	1	1504	30	13	19	35	1.91
20410422--20410463	20	2.2	19	84	16	52	30	2	26	40	1.69
20410458--20410646	42	4.1	48	79	13	172	24	16	34	23	1.95
20410466--20410635	42	3.9	43	83	7	200	23	18	35	21	1.95
20418884--20418924	21	2.0	21	85	0	55	24	4	0	70	1.06
20428145--20428193	24	2.0	26	92	8	84	0	28	2	69	1.00
20428514--20428544	3	10.0	3	93	6	53	32	3	0	64	1.09
20439079--20439125	22	2.0	24	84	15	64	48	6	25	19	1.72
20439088--20439131	22	2.0	22	82	8	54	54	9	20	15	1.68
20441656--20441839	42	4.4	42	85	0	242	23	22	33	20	1.97
20441892--20441929	2	19.0	2	88	0	58	50	2	2	44	1.30
20443185--20443277	46	2.0	46	93	0	159	33	5	23	37	1.78
20445324--20445361	19	2.0	20	89	5	60	18	31	5	44	1.72
20446218--20446248	1	31.0	1	100	0	62	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20446252--20446336	39	2.2	39	89	2	127	22	18	37	21	1.94
20448476--20448519	20	2.1	21	87	4	63	22	25	6	45	1.77
20449294--20449334	2	20.0	2	85	14	57	48	0	4	46	1.23
20449428--20449508	23	3.0	29	63	26	77	18	18	40	22	1.91
20452972--20453130	52	3.0	52	75	8	140	20	17	37	24	1.93
20453145--20453173	2	14.5	2	100	0	58	48	0	0	51	1.00
20455095--20455133	19	2.2	18	86	9	53	25	0	5	69	1.09
20456204--20456256	7	7.6	7	79	8	54	77	0	0	22	0.77
20456203--20456262	15	4.2	14	78	8	68	75	0	0	25	0.81
20456203--20456272	20	3.2	20	76	13	68	74	0	1	24	0.90
20456308--20456387	20	4.1	18	78	15	70	71	1	0	27	0.94
20456310--20456468	40	3.8	40	71	19	117	67	1	2	28	1.12
20456301--20456378	34	2.4	33	85	12	108	70	1	0	28	0.95
20456336--20456440	25	3.9	25	76	14	102	65	0	2	30	1.13
20456308--20456378	7	10.7	7	75	14	53	71	1	0	26	0.94
20456302--20456440	49	2.7	52	79	15	119	66	1	2	29	1.11
20456354--20456461	55	2.0	55	80	10	123	66	0	3	28	1.15
20456442--20456510	33	2.3	28	71	21	66	66	1	5	26	1.22
20456413--20456499	33	2.6	33	85	1	111	67	0	3	28	1.06
20456713--20456752	15	2.7	15	92	0	62	30	27	5	37	1.78
20467862--20467921	25	2.4	25	85	0	84	23	30	18	28	1.98
20477281--20477343	29	2.2	28	80	5	74	41	14	9	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20488897--20488939	21	2.2	19	87	8	59	65	11	0	23	1.25
20495388--20495487	52	2.0	48	94	5	164	37	10	33	19	1.85
20500635--20500757	43	2.9	42	79	7	131	25	17	36	21	1.94
20502604--20502631	2	14.0	2	100	0	56	0	50	0	50	1.00
20510303--20510344	21	2.0	21	85	0	57	23	26	14	35	1.93
20510699--20510758	23	2.6	23	89	0	84	33	38	1	26	1.67
20516698--20516745	21	2.3	20	79	10	60	14	22	6	56	1.61
20516703--20516743	21	1.9	22	90	5	66	17	24	7	51	1.70
20533573--20533601	9	3.2	9	100	0	58	65	13	10	10	1.47
20541006--20541270	55	4.8	55	92	0	354	18	10	38	32	1.85
20542590--20542618	15	1.9	15	100	0	58	41	0	20	37	1.53
20542646--20542691	24	2.0	23	82	4	56	26	0	8	65	1.21
20544232--20544408	75	2.4	75	96	0	318	35	24	6	33	1.82
20546005--20546135	42	3.1	42	88	0	190	22	31	19	27	1.97
20548260--20548469	55	3.8	55	89	2	314	29	36	13	20	1.91
20548249--20548469	110	2.0	110	91	0	361	28	36	13	21	1.91
20549258--20549284	14	1.9	14	100	0	54	74	3	22	0	0.98
20554073--20554204	42	3.1	41	81	4	156	24	21	32	21	1.98
20554080--20554245	43	3.9	42	77	8	131	25	19	31	22	1.98
20554272--20554350	2	40.0	2	92	2	133	49	1	0	48	1.09
20555524--20555716	66	2.9	66	83	2	217	25	12	28	32	1.93
20559438--20559530	38	2.4	37	81	12	91	24	35	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20561632--20561802	35	5.1	34	74	12	149	32	26	14	27	1.94
20561650--20561802	67	2.3	67	87	4	220	33	26	13	25	1.93
20570791--20570828	2	19.0	2	100	0	76	50	0	0	50	1.00
20575397--20575468	37	1.9	37	94	0	126	26	37	8	27	1.85
20576045--20576083	19	2.0	20	90	5	62	38	5	35	20	1.75
20579628--20579681	28	2.0	27	88	3	81	25	22	20	31	1.98
20584006--20584053	25	2.0	24	84	12	62	37	10	12	39	1.77
20585337--20585429	41	2.3	41	86	0	123	34	17	18	30	1.94
20585337--20585451	41	2.8	41	80	7	117	33	16	19	30	1.94
20587187--20587223	12	3.3	12	78	21	53	35	13	16	35	1.88
20589942--20590090	55	2.7	55	84	7	178	28	35	15	20	1.93
20594992--20595018	2	13.5	2	100	0	54	48	0	0	51	1.00
20599572--20599702	66	2.0	65	98	0	244	25	12	29	31	1.92
20600268--20600322	20	2.8	19	75	20	60	43	1	9	45	1.46
20601183--20601291	35	3.1	35	81	5	139	33	6	31	28	1.82
20603877--20603960	25	3.4	25	91	6	127	26	19	32	22	1.97
20606810--20606898	39	2.3	39	82	3	117	34	16	19	29	1.94
20607180--20607213	2	17.0	2	93	0	59	47	0	2	50	1.16
20607254--20607371	42	2.8	42	89	0	164	22	31	21	24	1.98
20609397--20609634	71	3.4	71	77	5	212	36	17	20	25	1.95
20613854--20614034	55	3.3	55	89	4	278	27	38	16	18	1.92
20613854--20614065	55	4.0	54	89	3	267	26	39	16	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20616951--20617106	42	3.7	42	84	5	215	21	33	22	22	1.97
20618492--20618600	43	2.5	43	83	0	128	28	20	31	20	1.97
20624144--20624177	2	17.0	2	100	0	68	50	0	0	50	1.00
20630621--20630665	20	2.2	21	84	4	56	48	0	8	42	1.34
20638417--20638467	15	3.4	14	81	5	57	47	15	3	33	1.64
20638864--20638921	29	2.0	29	83	3	73	53	5	3	37	1.40
20642087--20642232	55	2.7	55	89	0	220	26	36	15	21	1.93
20642088--20642265	55	3.4	52	84	6	182	25	38	15	20	1.91
20645997--20646034	20	1.9	20	88	0	58	68	2	21	7	1.28
20654995--20655040	17	2.7	17	75	21	51	45	4	6	43	1.49
20655460--20655497	20	1.9	20	94	0	67	26	0	26	47	1.52
20655543--20655678	28	4.9	28	97	0	238	32	14	25	27	1.95
20665453--20665492	20	2.1	20	86	9	57	32	22	15	30	1.94
20682759--20682799	20	2.0	20	95	0	73	34	41	0	24	1.55
20688723--20688766	22	2.0	22	100	0	88	9	45	13	31	1.75
20688998--20689051	23	2.3	22	77	20	56	51	25	7	14	1.68
20703079--20703325	68	3.6	68	88	0	341	34	18	10	36	1.86
20704566--20704596	16	1.9	16	93	0	53	67	12	3	16	1.35
20708437--20708574	63	2.2	63	86	2	188	25	32	17	24	1.97
20712742--20712852	34	3.3	34	87	0	150	30	10	23	35	1.89
20712966--20712998	16	2.1	16	88	5	50	81	0	15	3	0.80
20712990--20713052	25	2.5	25	84	0	90	49	12	20	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20713015--20713080	31	2.1	33	85	5	91	48	12	21	18	1.80
20722250--20722457	42	5.0	42	84	1	256	23	31	21	23	1.98
20722250--20722457	83	2.5	84	88	0	301	23	31	21	23	1.98
20726757--20726836	39	2.1	39	92	4	135	33	23	21	21	1.97
20727213--20727335	43	2.9	43	85	2	158	19	36	18	25	1.94
20729529--20729671	74	1.9	74	83	5	182	24	20	14	39	1.91
20732058--20732188	35	3.7	35	84	1	145	41	13	6	37	1.72
20736022--20736054	17	1.9	17	88	11	50	42	15	3	39	1.62
20736219--20736366	60	2.5	57	81	6	163	38	9	8	43	1.68
20736206--20736366	28	5.5	28	78	7	160	40	9	8	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91