genome.fa.s3.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  37  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12882340--12882384	15	2.9	16	81	18	60	4	26	0	68	1.08
12883143--12883180	20	1.9	20	94	0	67	28	5	18	47	1.70
12884340--12884364	13	1.9	13	100	0	50	44	0	8	48	1.32
12886039--12886077	19	2.1	19	85	9	53	41	12	33	12	1.82
12904576--12904646	36	2.0	36	88	0	106	46	15	15	22	1.83
12907356--12907381	1	26.0	1	100	0	52	100	0	0	0	0.00
12913380--12913507	64	2.0	64	96	0	238	31	18	20	29	1.96
12914258--12914401	72	2.0	71	95	4	263	29	2	20	47	1.64
12915804--12915836	5	6.6	5	92	0	57	0	21	0	78	0.75
12915804--12915850	15	3.2	16	85	11	57	0	19	0	80	0.70
12916326--12916402	37	2.1	38	85	2	102	28	12	18	40	1.87
12932037--12932071	2	18.0	2	94	5	63	48	0	0	51	1.00
12936046--12936349	60	5.0	61	87	2	414	24	31	18	26	1.97
12938931--12938965	11	3.1	12	92	8	56	8	25	0	65	1.21
12939752--12939966	68	3.2	66	79	7	222	1	32	4	61	1.27
12939938--12939973	12	3.0	12	87	0	54	0	27	0	72	0.85
12940025--12940070	16	2.8	17	84	12	53	0	36	0	63	0.95
12940026--12940076	12	4.1	12	87	5	66	0	33	1	64	1.05
12942714--12942759	20	2.3	20	96	0	83	28	4	21	45	1.71
12945423--12945469	22	2.1	23	84	11	62	27	6	17	48	1.71
12950374--12950405	2	16.0	2	93	0	55	53	0	46	0	1.00
12951051--12951218	55	3.0	55	79	6	196	20	14	40	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12952406--12952455	2	25.0	2	100	0	100	50	50	0	0	1.00
12952455--12952489	2	17.5	2	100	0	70	51	0	0	48	1.00
12952512--12952560	2	24.5	2	100	0	98	51	48	0	0	1.00
12952560--12952592	2	16.5	2	100	0	66	51	0	0	48	1.00
12953322--12953356	18	2.0	17	88	5	52	28	14	2	54	1.54
12961189--12961213	12	2.1	12	100	0	50	36	0	0	64	0.94
12962182--12962320	53	2.6	53	77	10	147	30	11	22	35	1.90
12963873--12963964	37	2.5	37	82	3	132	25	43	15	16	1.86
12965669--12965791	61	2.0	61	95	0	219	34	17	13	34	1.88
12968145--12968176	17	2.0	17	88	11	50	50	21	0	28	1.49
12971561--12971626	20	3.3	20	72	19	75	36	18	6	39	1.75
12971553--12971633	39	2.1	39	100	0	162	41	14	4	38	1.68
12973350--12973380	2	15.5	2	93	0	53	48	3	0	48	1.17
12976001--12976044	15	2.9	15	100	0	88	34	13	27	25	1.93
12976306--12976519	35	6.1	35	84	3	263	36	7	11	44	1.68
12976299--12976520	107	2.1	103	85	5	293	36	6	11	44	1.68
12976510--12976534	13	1.9	13	100	0	50	60	8	0	32	1.26
12992686--12992744	19	3.1	19	66	9	57	22	40	15	22	1.90
12997256--12997369	38	3.0	38	85	5	133	29	9	31	28	1.89
13001376--13001421	21	2.2	20	84	7	56	15	21	6	56	1.61
13001381--13001421	21	1.9	22	90	5	66	17	24	7	51	1.70
13028259--13028314	10	5.4	11	81	16	66	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13028402--13028441	19	2.1	19	90	0	62	35	10	37	17	1.83
13030871--13030900	13	2.2	14	94	5	53	83	0	16	0	0.65
13033686--13033719	15	2.3	15	90	5	52	64	0	35	0	0.94
13033695--13033727	15	2.3	15	89	5	50	72	0	27	0	0.85
13035212--13035267	25	2.2	25	87	0	76	33	21	23	21	1.97
13039665--13039708	21	2.0	22	82	4	54	63	6	2	27	1.31
13043840--13043892	23	2.3	23	90	0	79	26	7	37	28	1.83
13043863--13044010	58	2.6	58	83	0	179	25	14	32	27	1.95
13044046--13044331	47	6.1	47	81	1	340	24	17	30	27	1.97
13044027--13044348	94	3.4	94	87	1	441	24	18	29	27	1.98
13044565--13044589	7	3.6	7	100	0	50	12	44	0	44	1.41
13045003--13045363	31	11.5	30	82	5	355	22	17	19	39	1.92
13045003--13045361	93	3.8	93	81	5	391	23	17	20	39	1.92
13045034--13045353	160	2.0	160	86	1	444	22	16	20	40	1.92
13048511--13048535	12	2.1	12	100	0	50	36	0	0	64	0.94
13050961--13051143	43	4.3	43	86	0	258	24	30	19	26	1.98
13054408--13055008	118	5.1	118	89	0	898	26	30	21	21	1.98
13054586--13054654	31	2.2	31	84	5	86	28	31	20	18	1.96
13054731--13054812	31	2.7	31	76	12	89	28	32	17	21	1.96
13058771--13059025	31	8.2	31	90	0	377	38	16	16	27	1.91
13058770--13059025	62	4.1	62	91	1	415	38	16	16	27	1.91
13059449--13059490	9	4.7	9	77	11	50	33	7	40	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13065334--13065453	42	2.9	42	85	3	136	39	25	14	21	1.91
13066626--13066788	56	2.9	57	89	1	256	28	17	4	49	1.67
13071418--13071473	10	5.9	9	79	12	51	83	1	1	12	0.79
13071420--13071452	17	1.9	17	93	0	57	84	3	3	9	0.82
13071418--13071475	14	4.2	14	79	14	59	84	1	1	12	0.78
13073677--13073716	20	2.0	20	90	4	64	7	5	22	65	1.38
13075007--13075060	19	2.8	19	80	5	56	20	1	9	68	1.27
13076914--13076957	20	2.2	21	88	8	65	20	22	15	40	1.90
13078180--13078328	60	2.5	60	83	0	199	21	16	22	39	1.92
13081098--13081194	38	2.6	38	93	0	158	26	41	10	21	1.85
13083845--13083927	35	2.4	35	85	0	103	25	9	34	30	1.88
13084814--13084857	22	2.0	22	86	0	61	45	27	11	15	1.81
13084864--13084949	22	3.9	22	93	0	145	40	26	5	26	1.78
13092889--13092932	22	2.0	22	82	8	54	34	20	2	43	1.64
13097995--13098031	2	18.5	2	88	0	56	51	5	0	43	1.24
13097995--13098031	10	3.7	10	92	0	65	51	5	0	43	1.24
13102782--13102876	30	3.2	30	77	1	93	33	12	7	46	1.70
13105435--13105494	30	2.1	29	81	6	68	31	8	21	38	1.83
13116482--13116544	30	2.2	30	82	5	76	28	4	22	44	1.73
13131409--13131437	14	2.0	15	93	6	51	13	6	0	79	0.93
13135454--13135494	12	3.5	12	80	12	50	73	0	4	21	1.02
13135964--13136001	2	19.5	2	89	5	60	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13136374--13136667	60	4.9	60	87	2	414	25	18	31	24	1.97
13137499--13137536	2	19.0	2	100	0	76	50	0	0	50	1.00
13137994--13138033	18	2.2	18	100	0	80	40	20	10	30	1.85
13137986--13138033	9	5.3	9	89	0	69	41	20	8	29	1.81
13138092--13138124	16	2.1	16	94	0	57	72	0	0	27	0.85
13138301--13138335	18	1.9	18	88	0	52	54	22	8	14	1.67
13138524--13138578	21	2.6	21	74	8	58	36	7	16	40	1.76
13142968--13143027	31	1.9	32	83	10	79	56	1	0	41	1.09
13143527--13143626	34	2.9	34	73	10	85	29	8	37	26	1.85
13152130--13152163	9	3.9	9	84	7	52	14	11	26	47	1.79
13152129--13152162	17	2.0	17	100	0	68	11	11	29	47	1.76
13154218--13154258	21	1.9	22	90	5	66	17	24	7	51	1.70
13155014--13155189	66	2.7	64	82	7	203	38	15	11	34	1.84
13162324--13162364	21	1.9	22	95	5	75	53	7	21	17	1.67
13162319--13162370	21	2.4	21	83	3	68	55	7	21	15	1.64
13164633--13164687	23	2.4	23	84	6	67	25	14	34	25	1.94
13164903--13164959	23	2.5	23	76	0	60	29	12	35	22	1.91
13164714--13165248	104	5.2	103	79	5	544	28	14	34	22	1.93
13164716--13165252	208	2.6	205	88	3	774	28	14	34	22	1.93
13165111--13165171	23	2.7	23	81	0	77	27	13	37	21	1.90
13165197--13165248	23	2.3	23	86	0	68	25	19	34	21	1.96
13168254--13168306	23	2.3	23	80	0	61	32	9	35	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13168199--13168571	104	3.6	104	77	1	381	28	14	33	22	1.94
13168357--13168412	23	2.4	23	85	5	78	33	16	28	21	1.95
13168177--13168571	208	1.9	207	87	1	576	29	14	33	22	1.94
13168546--13168602	23	2.5	23	80	8	64	22	22	33	21	1.97
13168562--13168625	23	2.8	23	85	0	74	25	20	31	23	1.98
13168964--13168996	12	2.6	13	90	4	50	3	12	6	78	1.04
13169079--13169568	55	8.9	55	85	0	629	10	12	32	44	1.76
13169600--13169664	25	2.6	25	95	0	112	26	23	30	20	1.98
13171013--13171045	2	16.5	2	100	0	66	51	0	0	48	1.00
13171890--13171933	22	2.0	22	86	8	63	31	20	6	40	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91