genome.fa.s3.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  41  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14139606--14139666	20	3.1	19	81	13	70	77	1	0	21	0.86
14139617--14139664	5	9.0	5	80	19	53	77	0	0	22	0.78
14139608--14139668	23	2.8	21	80	11	70	75	1	0	22	0.89
14139617--14139664	17	2.9	17	80	20	66	77	0	0	22	0.78
14139615--14139670	22	2.5	24	81	18	77	73	0	0	26	0.84
14144589--14144628	20	2.0	20	85	0	53	17	35	7	40	1.78
14145268--14145309	20	2.2	19	84	16	52	30	2	26	40	1.69
14145304--14145411	37	2.9	37	82	9	132	29	10	35	25	1.89
14145304--14145428	37	3.4	36	77	11	105	30	9	35	24	1.88
14146736--14146790	25	2.2	25	96	0	101	21	18	3	56	1.57
14146868--14146990	64	1.9	64	84	0	165	34	13	21	30	1.92
14146977--14147051	28	2.7	28	77	4	80	32	14	24	29	1.95
14152981--14153185	104	2.0	103	97	0	383	43	10	20	23	1.83
14161260--14161306	21	2.2	21	100	0	94	25	31	21	21	1.98
14163946--14164056	37	3.0	37	82	4	134	34	9	35	21	1.85
14168610--14168679	37	1.9	36	82	2	86	24	34	8	32	1.86
14170373--14170444	37	1.9	37	88	0	108	29	12	36	22	1.91
14181291--14181327	19	1.9	19	88	0	56	32	8	21	37	1.83
14185287--14185401	55	2.1	54	84	7	144	40	20	10	28	1.86
14207210--14207314	40	2.7	37	80	15	122	22	40	16	20	1.90
14208718--14208756	15	2.6	15	83	0	51	23	20	2	53	1.57
14208964--14209342	77	4.9	77	88	3	476	37	13	7	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14209856--14210048	73	2.6	72	79	8	203	37	17	20	24	1.93
14212649--14212741	35	2.8	33	76	7	98	32	24	15	27	1.95
14212622--14212808	67	2.8	67	81	3	180	34	26	15	23	1.94
14214791--14214843	27	2.0	27	96	0	97	47	11	22	18	1.81
14214836--14214877	19	2.2	19	86	0	57	40	9	11	38	1.75
14215338--14215376	20	2.0	20	89	0	60	38	20	2	38	1.66
14223095--14223252	67	2.4	66	85	5	201	32	26	13	27	1.93
14223128--14223253	32	3.8	32	73	10	110	34	26	13	26	1.93
14223129--14223267	67	2.1	67	87	2	199	34	25	12	28	1.92
14223129--14223289	67	2.4	67	84	4	191	36	26	12	24	1.91
14226154--14226192	19	2.1	19	90	0	60	38	10	0	51	1.36
14226286--14226310	11	2.3	11	100	0	50	28	0	0	72	0.86
14227641--14227678	18	2.1	19	90	5	60	63	0	0	36	0.95
14227656--14227685	14	2.1	14	93	0	51	56	0	0	43	0.99
14227666--14227695	11	2.7	11	89	0	51	56	0	0	43	0.99
14228097--14228157	19	3.2	19	100	0	122	16	36	9	37	1.82
14238712--14238793	42	2.0	42	95	0	146	20	31	24	23	1.98
14240161--14240217	5	11.6	5	85	7	73	1	19	1	77	0.95
14240827--14240865	2	19.5	2	100	0	78	48	0	0	51	1.00
14245112--14245140	11	2.6	11	100	0	58	55	13	0	31	1.39
14245133--14245175	21	2.0	22	90	4	70	41	16	6	34	1.75
14247243--14247318	25	3.0	24	74	12	71	11	27	15	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14247244--14247324	27	3.1	27	78	7	78	9	27	16	46	1.78
14247327--14247371	5	9.4	5	85	4	58	0	22	2	75	0.91
14249245--14249341	19	5.0	19	65	9	70	19	14	42	23	1.88
14249240--14249341	38	2.6	39	89	3	152	18	13	42	25	1.87
14258642--14258684	21	2.0	21	86	0	59	16	23	6	53	1.67
14259485--14259578	43	2.2	41	82	10	118	26	14	32	25	1.95
14275905--14275990	40	2.1	42	85	8	115	20	12	41	24	1.87
14275892--14275995	40	2.6	38	81	11	111	21	13	38	26	1.90
14285084--14285152	34	2.0	34	86	8	95	30	28	10	30	1.90
14288155--14288192	16	2.4	16	82	8	51	2	26	0	71	1.00
14289254--14289293	2	20.5	2	89	5	64	47	0	0	52	1.00
14301679--14301752	30	2.5	30	80	6	71	28	25	22	22	1.99
14303445--14303534	38	2.6	34	86	12	96	53	0	0	46	1.00
14303445--14303515	19	3.7	19	100	0	142	54	0	0	45	0.99
14303913--14304059	74	2.0	72	97	2	276	44	4	31	19	1.70
14306891--14306944	28	2.0	28	81	3	65	37	24	16	22	1.94
14308578--14308620	22	2.0	22	85	0	59	27	18	18	34	1.95
14309177--14309301	42	3.0	42	87	0	178	21	30	23	24	1.99
14312373--14312415	20	2.2	20	86	0	59	48	11	16	23	1.78
14312319--14312488	73	2.3	73	83	6	193	42	17	18	21	1.89
14312446--14312488	20	2.2	20	91	8	70	41	16	20	20	1.90
14312909--14313014	32	3.2	32	74	12	115	26	13	25	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14312906--14313029	32	3.8	33	73	12	103	28	15	23	33	1.95
14312866--14313041	67	2.6	68	83	5	234	26	14	23	34	1.94
14313634--14313738	35	3.0	35	84	0	138	27	32	13	26	1.94
14314618--14314655	20	1.9	20	88	0	58	52	5	18	23	1.65
14318079--14318127	23	2.2	23	81	3	55	34	16	10	38	1.82
14318275--14318380	38	2.7	39	85	4	142	22	37	16	22	1.94
14320541--14320597	22	2.6	22	82	0	60	26	21	21	31	1.98
14322609--14322635	2	13.5	2	100	0	54	51	0	0	48	1.00
14324916--14324955	21	1.9	21	94	0	71	32	20	12	35	1.90
14325956--14326112	29	5.4	29	84	3	208	40	13	8	36	1.76
14327929--14328031	47	2.2	47	89	0	161	24	25	10	39	1.87
14336666--14336712	20	2.3	21	81	3	60	51	0	8	40	1.33
14338690--14338721	13	2.5	13	100	0	64	40	21	6	31	1.78
14339221--14339252	13	2.5	13	100	0	64	40	21	6	31	1.78
14338495--14341363	531	5.4	531	99	0	5711	34	19	9	35	1.85
14339752--14339783	13	2.5	13	100	0	64	40	21	6	31	1.78
14340283--14340314	13	2.5	13	100	0	64	40	21	6	31	1.78
14340814--14340845	13	2.5	13	100	0	64	40	21	6	31	1.78
14355145--14355169	2	12.5	2	100	0	50	48	0	0	52	1.00
14355326--14355487	74	2.2	74	78	5	166	22	23	24	29	1.99
14359920--14360086	87	1.9	87	83	2	219	27	27	16	28	1.97
14360142--14360381	80	3.0	80	88	3	297	33	25	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14366232--14366270	11	3.8	11	83	16	57	69	7	23	0	1.14
14366284--14366328	20	2.2	21	84	11	58	57	6	20	15	1.60
14366283--14366330	21	2.2	21	78	10	53	60	6	18	14	1.55
14376374--14376445	37	1.9	37	83	10	94	25	36	18	20	1.95
14376548--14376581	2	17.0	2	100	0	68	50	0	0	50	1.00
14399968--14399992	13	1.9	13	100	0	50	68	16	0	16	1.22
14400069--14400110	19	2.2	19	100	0	84	14	35	0	50	1.43
14401413--14401488	36	2.1	37	87	2	109	27	23	19	28	1.98
14411478--14411514	19	1.9	19	100	0	74	27	0	29	43	1.55
14415134--14415158	13	1.9	13	100	0	50	44	0	8	48	1.32
14420136--14420192	20	2.9	19	73	19	55	43	1	7	47	1.40
14421352--14421407	29	1.9	29	88	0	85	37	12	14	35	1.84
14421896--14421936	20	2.0	20	90	0	64	17	34	7	41	1.77
14422834--14422935	40	2.6	39	84	7	129	20	18	39	21	1.93
14426011--14426102	39	2.3	39	83	5	105	25	23	18	32	1.97
14427057--14427327	27	10.1	27	73	9	171	38	16	12	33	1.86
14427057--14427245	55	3.5	54	78	5	175	37	16	13	32	1.87
14427057--14427237	82	2.2	81	83	1	209	37	16	12	33	1.87
14427573--14427617	23	2.0	23	95	0	81	42	26	4	26	1.74
14428203--14428325	32	3.8	32	77	8	131	34	26	13	25	1.93
14428203--14428363	66	2.4	67	87	3	218	36	26	13	24	1.92
14431292--14431414	43	2.9	43	82	0	147	21	37	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14434397--14434518	43	2.8	43	85	4	149	24	18	37	19	1.94
14434515--14434574	23	2.6	23	89	0	84	26	1	38	33	1.67
14436110--14436148	20	2.0	20	89	0	60	38	20	2	38	1.66
14442589--14442639	23	2.3	22	89	3	75	37	13	0	47	1.44
14443715--14443876	35	4.9	32	73	12	121	35	27	12	24	1.91
14443697--14443854	67	2.4	67	88	2	219	32	27	12	27	1.92
14443745--14443854	35	3.2	33	80	7	132	30	27	12	29	1.93
14443734--14443876	67	2.1	67	85	5	200	37	28	11	23	1.89
14445571--14445624	22	2.5	22	96	0	99	31	0	18	50	1.48
14460142--14460179	10	3.2	12	85	14	53	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91