genome.fa.s3.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  29  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9962834--9962886	2	27.0	2	96	3	99	49	0	0	50	1.00
9969819--9969871	26	2.0	26	100	0	106	22	22	15	39	1.91
9971092--9971146	24	2.3	24	75	9	60	43	3	14	38	1.63
9980928--9980986	26	2.3	26	79	5	66	66	3	28	1	1.18
9981158--9981189	14	2.1	16	88	11	50	18	0	25	56	1.42
9982827--9982873	23	2.1	22	88	7	69	36	4	4	55	1.39
9984545--9984639	39	2.4	40	86	8	142	33	17	24	24	1.96
9989011--9989075	27	2.4	27	100	0	130	23	29	20	27	1.98
9990639--9990718	36	2.3	35	82	6	90	17	18	6	57	1.60
9992645--9992679	2	17.5	2	100	0	70	48	0	0	51	1.00
9992703--9992743	2	20.5	2	100	0	82	48	0	0	51	1.00
9992807--9992886	42	1.9	42	84	0	106	23	36	17	22	1.95
10000032--10000056	13	1.9	13	100	0	50	32	4	0	64	1.12
10000871--10000912	7	6.0	7	81	8	50	2	40	11	45	1.54
10000871--10000919	14	3.4	15	77	8	57	4	40	10	44	1.57
10000863--10000919	29	2.0	28	93	3	96	5	38	10	45	1.61
10010636--10010688	22	2.4	22	93	0	88	26	16	26	30	1.97
10011151--10011181	2	15.5	2	93	0	53	48	3	0	48	1.17
10014968--10015091	42	3.0	42	92	0	212	21	21	33	22	1.97
10015326--10015387	26	2.4	26	94	0	106	24	3	40	32	1.71
10016282--10016374	38	2.5	37	89	7	134	22	34	15	27	1.94
10019988--10020026	20	1.9	21	89	5	62	20	5	7	66	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10023708--10023762	13	4.2	13	76	17	51	67	1	5	25	1.22
10023717--10023768	15	3.5	15	75	17	54	73	1	1	23	1.04
10025068--10025154	36	2.5	35	88	1	129	20	10	39	29	1.86
10025248--10025373	2	62.5	2	85	7	166	48	0	4	45	1.29
10029191--10029230	15	2.7	15	88	3	55	0	22	2	75	0.93
10033317--10033593	35	7.9	35	80	3	245	42	14	6	35	1.72
10033338--10033586	107	2.4	107	80	3	258	43	14	6	35	1.71
10035423--10035503	42	1.9	42	94	0	144	20	22	34	22	1.97
10035738--10035799	26	2.4	26	94	0	106	24	3	40	32	1.71
10039570--10039614	20	2.2	21	84	4	56	48	0	8	42	1.34
10042876--10042985	37	3.0	37	79	2	96	25	33	11	29	1.91
10059628--10059708	27	3.0	27	70	20	69	23	9	37	29	1.87
10059609--10059819	55	3.8	55	87	1	289	22	12	36	28	1.91
10064764--10064850	36	2.4	36	88	1	131	24	12	35	27	1.92
10065087--10065227	62	2.3	62	80	14	173	24	20	17	37	1.94
10066361--10066473	36	3.1	36	66	20	90	30	32	13	23	1.93
10066478--10066602	43	2.9	42	80	4	153	25	32	16	25	1.96
10088409--10088609	58	3.5	57	83	6	214	55	4	36	2	1.35
10088760--10088799	2	20.0	2	94	0	71	52	0	0	47	1.00
10089293--10089532	60	4.0	59	85	5	322	24	17	32	25	1.97
10094299--10094362	21	3.0	21	86	0	83	45	9	12	32	1.74
10096087--10096120	3	11.3	3	93	0	59	35	2	29	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10106886--10106986	38	2.6	40	79	3	116	19	14	40	24	1.90
10110620--10110682	20	3.2	20	84	2	92	31	39	1	26	1.66
10110681--10110790	43	2.6	43	85	2	141	21	36	17	24	1.94
10116052--10116219	42	4.0	42	82	3	185	25	20	32	21	1.98
10116246--10116282	2	18.5	2	94	0	65	51	2	0	45	1.15
10125751--10125915	77	2.1	77	91	2	269	40	11	7	40	1.69
10131490--10131590	43	2.3	44	86	5	143	27	15	35	20	1.94
10151534--10151561	9	3.1	9	100	0	56	32	0	21	46	1.52
10156404--10156453	13	3.9	12	82	10	55	74	0	26	0	0.83
10156415--10156487	31	2.4	29	78	14	76	68	1	30	0	0.98
10156407--10156492	21	4.3	20	72	12	61	67	1	30	1	1.05
10157510--10157638	43	3.0	42	85	5	161	25	19	32	22	1.97
10171306--10171346	22	1.9	22	85	5	57	26	17	4	51	1.65
10173435--10173717	73	3.9	71	75	11	216	38	16	20	24	1.92
10174938--10175096	43	3.7	44	80	7	191	23	37	16	22	1.94
10175861--10175958	49	2.0	48	94	5	171	51	27	0	20	1.48
10178335--10178424	42	2.1	42	87	4	128	24	16	34	24	1.95
10179517--10179549	13	2.5	13	90	0	57	30	0	39	30	1.57
10181097--10181213	42	2.8	42	88	1	153	29	15	30	23	1.95
10184243--10184836	298	2.0	297	97	0	1125	29	22	13	33	1.93
10190943--10190973	2	15.5	2	100	0	62	48	0	0	51	1.00
10215946--10216019	34	2.1	35	85	7	98	35	2	24	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10216584--10216842	73	3.5	73	80	1	268	37	16	20	25	1.93
10218218--10218248	2	15.5	2	100	0	62	51	0	0	48	1.00
10224959--10225048	42	2.1	43	81	2	101	21	37	20	21	1.94
10228408--10228514	51	2.1	51	94	1	189	41	4	14	39	1.67
10229062--10229181	58	2.1	57	88	1	177	36	9	18	35	1.83
10231987--10232095	35	3.2	33	77	12	114	33	22	11	31	1.91
10231930--10232115	67	2.8	67	83	3	223	35	24	13	26	1.93
10231950--10232107	32	4.8	32	70	8	102	35	23	13	27	1.93
10241720--10241757	20	1.9	20	100	0	76	28	5	21	44	1.73
10242992--10243016	13	1.9	13	100	0	50	44	0	8	48	1.32
10247850--10247905	25	2.2	25	78	12	62	46	14	23	16	1.83
10248593--10248727	66	2.0	66	100	0	270	40	16	19	24	1.91
10253812--10253855	22	2.0	22	90	0	70	31	13	43	11	1.80
10253873--10253925	28	1.9	28	88	3	81	52	15	22	9	1.70
10253907--10253962	25	2.2	25	78	12	62	46	14	23	16	1.83
10259128--10259237	37	3.0	37	80	0	103	25	35	10	28	1.90
10264559--10264639	39	2.1	39	92	0	135	33	23	20	22	1.97
10265019--10265128	43	2.6	43	86	0	139	22	33	17	26	1.96
10272178--10272218	17	2.4	17	95	0	73	31	24	21	21	1.98
10277786--10277927	39	3.8	38	66	16	93	29	30	14	24	1.95
10277723--10277963	73	3.3	73	88	0	347	29	33	14	22	1.94
10277752--10277936	34	5.1	34	67	16	113	29	31	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10277763--10277964	36	5.6	34	66	18	86	28	34	14	22	1.93
10280815--10280852	20	1.9	20	88	0	58	10	10	10	68	1.40
10280833--10281285	226	2.0	227	91	1	730	26	9	15	48	1.75
10282662--10282721	25	2.4	25	82	0	66	31	33	11	23	1.91
10282681--10282742	28	2.4	25	75	8	61	29	33	17	19	1.95
10285652--10285816	35	4.7	35	81	1	168	38	6	12	42	1.68
10285661--10285862	106	1.9	107	87	1	298	38	7	13	40	1.74
10285622--10285831	71	3.0	70	75	4	201	37	6	12	43	1.69
10285629--10285841	35	6.2	33	77	6	158	37	7	12	42	1.70
10292958--10293068	37	3.0	37	94	0	195	20	40	10	27	1.86
10294686--10294874	35	5.4	35	80	6	188	37	6	12	43	1.68
10294693--10294919	107	2.1	107	84	4	298	37	6	13	42	1.70
10297054--10297183	42	3.1	42	78	4	154	24	33	18	23	1.96
10312203--10312251	2	24.0	2	91	4	80	48	0	4	46	1.20
10312500--10312557	21	2.8	20	72	15	55	41	10	13	34	1.79
10314321--10314446	42	3.0	42	85	1	153	24	17	35	22	1.95
10318519--10318707	34	5.2	34	68	19	123	22	12	34	30	1.91
10318506--10318745	74	3.3	74	88	1	365	21	12	34	30	1.91
10318513--10318783	147	1.8	148	84	3	375	22	12	34	30	1.92
10322226--10322304	39	2.0	39	100	0	158	46	5	15	32	1.67
10326037--10326077	21	1.9	22	90	5	66	51	7	24	17	1.70
10326032--10326083	21	2.4	21	78	15	61	53	5	23	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333030--10333069	21	1.9	21	84	0	53	30	2	15	52	1.55
10338862--10338901	21	1.9	21	84	0	53	32	5	17	45	1.70
10344401--10344482	40	2.0	40	88	0	119	41	17	9	31	1.82
10350041--10350078	15	2.5	15	87	12	51	5	21	0	73	1.02
10353599--10353629	2	15.5	2	93	0	53	45	0	0	54	0.99
10353724--10354033	81	3.8	81	90	0	467	23	13	37	25	1.91
10353819--10354032	36	5.4	36	65	18	95	23	14	37	24	1.92
10353850--10353984	44	3.2	43	69	18	131	24	13	38	23	1.91
10353850--10353996	45	3.5	44	68	16	130	25	13	38	23	1.91
10355272--10355420	55	2.7	55	89	2	228	22	15	33	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91