genome.fa.s3.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  31  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10812768--10812810	19	2.3	19	88	4	70	55	2	0	41	1.12
10813885--10813943	17	3.6	17	78	12	54	72	0	20	6	1.06
10813934--10813991	22	2.5	23	86	8	82	51	13	22	12	1.74
10814721--10814900	60	3.0	60	85	1	263	27	15	31	25	1.96
10824250--10824361	43	2.6	43	85	5	147	24	17	37	20	1.94
10824253--10824374	43	2.8	43	80	7	133	24	16	38	20	1.92
10826722--10826760	10	3.9	10	96	0	69	41	7	7	43	1.62
10832606--10832657	27	2.0	26	84	3	68	34	17	21	26	1.95
10835973--10836229	68	3.8	68	79	3	223	38	9	17	33	1.83
10836691--10836782	21	4.6	21	67	15	77	38	13	11	36	1.81
10836690--10836822	59	2.2	60	92	5	225	40	12	12	33	1.82
10836771--10836862	40	2.3	40	96	3	168	44	11	14	29	1.80
10844424--10844525	37	2.7	37	84	4	123	20	37	17	24	1.94
10847468--10847593	42	3.0	42	88	1	162	21	33	19	26	1.97
10853232--10853446	54	4.0	54	90	0	340	27	40	11	20	1.86
10853341--10853426	25	3.3	25	64	12	64	24	44	11	19	1.84
10860589--10860755	45	3.7	45	90	1	246	7	24	8	58	1.55
10860589--10860784	45	4.4	45	87	4	238	7	23	9	59	1.53
10864679--10864730	5	10.6	5	80	12	63	0	17	0	80	0.69
10864673--10864724	15	3.3	15	82	15	61	0	17	0	80	0.69
10864676--10864726	24	2.1	24	92	7	86	0	15	0	82	0.65
10864686--10864735	19	2.6	19	87	6	66	0	18	2	78	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10864869--10864988	34	3.5	34	80	7	120	33	30	10	25	1.90
10867576--10867685	57	1.9	57	87	3	159	20	32	21	24	1.98
10873402--10873460	23	2.6	23	88	0	82	27	1	37	33	1.67
10873766--10873807	21	2.0	21	85	0	57	35	19	26	19	1.95
10911872--10911932	19	3.1	19	68	9	50	18	11	45	24	1.82
10919901--10920019	43	2.8	43	89	2	177	21	21	37	19	1.94
10919911--10920032	43	2.8	43	88	2	174	22	18	39	18	1.92
10920018--10920080	20	3.2	20	90	2	101	25	3	41	30	1.71
10920088--10920114	12	2.2	12	100	0	54	59	40	0	0	0.98
10920147--10920209	20	3.2	20	90	2	101	30	41	3	25	1.71
10920208--10920326	43	2.8	43	89	2	168	19	37	21	21	1.94
10924791--10924965	19	9.1	19	60	12	61	20	15	40	24	1.90
10924787--10924968	38	4.7	38	79	10	192	19	14	40	24	1.90
10924787--10924968	77	2.4	77	97	0	337	19	14	40	24	1.90
10928252--10928289	19	2.0	19	94	0	67	39	26	0	34	1.57
10931093--10931135	22	2.0	22	95	0	77	37	23	9	30	1.86
10941158--10941283	42	3.0	42	82	1	144	20	30	20	27	1.98
10948897--10948939	21	2.2	18	88	12	59	44	18	9	27	1.80
10952977--10953006	14	2.1	14	93	0	51	76	0	16	6	0.99
10953486--10953532	24	1.9	25	83	12	62	27	12	25	34	1.92
10953702--10953745	16	2.6	17	82	13	56	77	0	20	2	0.88
10953670--10953750	10	7.7	11	73	21	50	72	1	19	6	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10953737--10953824	25	3.5	25	93	0	149	48	13	21	15	1.80
10953787--10953852	31	2.1	33	85	5	91	48	12	22	16	1.79
10957184--10957418	35	6.7	35	80	3	251	42	14	6	36	1.72
10957200--10957418	71	3.1	70	81	7	275	42	15	7	35	1.74
10957198--10957418	107	2.1	103	86	3	298	42	14	7	34	1.74
10959694--10959729	2	18.0	2	100	0	72	50	0	0	50	1.00
10961146--10961175	14	2.1	15	93	6	53	33	0	33	33	1.58
10963288--10963321	17	2.1	16	88	5	50	8	14	20	55	1.65
10968782--10968841	28	2.1	28	81	0	66	35	20	16	28	1.94
10973085--10973145	22	2.8	22	89	0	95	42	22	6	27	1.78
10980589--10980625	18	2.0	19	89	5	58	24	0	35	40	1.55
10981258--10981367	35	3.1	35	93	0	175	29	8	36	26	1.85
10981266--10981402	35	3.9	36	85	6	158	28	9	37	24	1.86
10986585--10986644	20	3.0	20	80	7	70	53	0	6	40	1.27
10989946--10989970	13	1.9	13	100	0	50	52	0	0	48	1.00
10992692--10992734	22	2.0	22	82	17	54	39	4	20	34	1.74
11006657--11006754	19	5.1	19	61	11	56	20	16	40	22	1.91
11014931--11015027	38	2.6	38	96	0	176	22	14	38	24	1.92
11015537--11015576	21	1.9	21	84	0	53	30	27	17	25	1.97
11020308--11020372	22	3.0	22	86	0	85	41	23	7	27	1.81
11031225--11031384	54	3.0	54	93	0	266	19	14	41	24	1.88
11034069--11034226	43	3.7	43	83	1	183	25	19	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11039614--11039654	21	2.1	19	86	9	55	29	0	9	60	1.28
11041042--11041090	21	2.3	21	92	0	80	32	20	28	18	1.96
11041101--11041143	21	2.0	21	90	0	68	25	27	16	30	1.97
11041395--11041520	42	3.0	42	87	4	191	22	31	24	21	1.98
11041941--11042273	167	2.0	165	98	1	639	32	27	6	33	1.82
11042247--11042271	2	12.5	2	100	0	50	0	48	0	52	1.00
11051728--11051841	56	2.0	56	87	0	165	20	20	16	42	1.89
11059984--11060089	2	54.0	2	86	7	137	45	0	2	50	1.23
11060656--11060696	19	2.1	20	86	4	57	70	2	2	24	1.11
11062222--11062454	35	6.5	35	70	8	121	33	20	18	27	1.96
11063113--11063190	35	2.2	35	86	0	102	38	28	7	25	1.83
11067954--11068000	24	2.0	23	83	4	58	34	17	10	38	1.84
11068123--11068233	38	2.9	38	79	2	105	24	31	18	25	1.98
11070301--11070352	22	2.4	22	93	0	86	28	23	15	32	1.95
11071885--11071922	14	2.8	14	92	4	60	34	0	10	55	1.34
11087495--11087554	30	2.1	29	81	6	68	31	8	21	38	1.83
11092441--11092481	21	2.1	19	86	9	55	60	9	0	29	1.28
11098428--11098484	27	2.1	28	87	9	82	42	22	14	21	1.88
11101120--11101144	13	1.9	13	100	0	50	48	0	0	52	1.00
11102301--11102364	29	2.2	29	86	2	85	45	18	6	29	1.74
11105011--11105114	38	2.7	40	85	7	142	21	16	40	22	1.91
11108130--11108266	42	3.3	42	91	0	202	24	35	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11117669--11117741	35	2.1	35	86	0	101	30	31	10	27	1.91
11121635--11121680	20	2.3	20	88	7	67	32	4	17	45	1.68
11126393--11126504	34	3.1	34	69	16	91	25	12	31	30	1.93
11126393--11126535	73	2.0	73	90	2	225	25	13	31	29	1.94
11126497--11126606	36	3.1	35	76	10	107	22	12	33	30	1.92
11131322--11131692	43	9.0	43	81	7	353	25	18	32	22	1.97
11131344--11131659	166	1.9	161	87	5	456	26	18	32	22	1.97
11131384--11131659	83	3.3	84	90	3	436	26	18	32	22	1.97
11134493--11134533	2	20.5	2	100	0	82	51	0	0	48	1.00
11136138--11136168	2	15.5	2	100	0	62	51	0	0	48	1.00
11137576--11137628	21	2.5	21	81	3	61	67	0	7	24	1.16
11142546--11142591	21	2.2	21	84	0	56	50	8	4	36	1.53
11143669--11143772	32	3.2	32	67	15	86	33	24	15	26	1.95
11143630--11143814	67	2.8	66	87	4	248	35	25	14	25	1.93
11147923--11147982	20	3.0	20	80	7	70	53	0	6	40	1.27
11153257--11153341	37	2.4	34	81	11	93	25	34	11	28	1.91
11153273--11153417	37	3.7	37	76	18	157	27	36	8	26	1.86
11153296--11153387	46	2.0	46	89	4	141	25	33	13	28	1.93
11158022--11158091	35	2.0	34	86	2	95	37	27	7	28	1.83
11158080--11158185	32	3.2	32	74	12	106	33	25	13	27	1.93
11158097--11158208	35	3.3	33	73	16	95	31	24	13	31	1.93
11158041--11158228	67	2.8	66	83	4	243	37	26	11	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11158128--11158231	32	3.1	33	75	8	111	38	26	12	22	1.90
11163160--11163190	2	15.5	2	100	0	62	51	48	0	0	1.00
11163229--11163320	43	2.2	43	86	9	127	26	29	17	27	1.97
11173097--11173431	68	4.9	68	86	1	402	33	17	11	37	1.86
11174434--11174472	16	2.5	16	87	4	53	69	15	2	12	1.30
11176237--11176340	35	3.0	35	84	2	120	24	10	37	27	1.88
11180846--11180888	20	2.2	20	86	0	59	44	9	27	18	1.80
11185756--11185951	62	3.2	61	85	2	266	32	19	27	20	1.97
11189008--11189133	42	3.0	43	82	3	157	24	19	31	24	1.98
11193091--11193115	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91