genome.fa.s3.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  40  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13812123--13812174	14	3.8	13	78	12	59	86	3	7	1	0.76
13813456--13813489	2	17.0	2	100	0	68	50	0	0	50	1.00
13815643--13815680	15	2.4	16	91	4	60	78	0	0	21	0.74
13818147--13818175	15	1.9	15	100	0	58	27	24	20	27	1.99
13819368--13819411	20	2.2	20	88	8	63	20	2	6	70	1.21
13823133--13823192	29	2.1	29	100	0	120	35	23	6	35	1.81
13825512--13825550	18	2.2	18	86	9	53	69	5	12	12	1.35
13829983--13830021	18	2.2	18	85	0	51	71	5	12	10	1.28
13832292--13832337	20	2.3	20	88	0	65	32	4	21	41	1.73
13833153--13833928	171	4.5	170	80	6	863	38	13	14	33	1.86
13836439--13836589	42	3.6	42	92	0	230	23	33	21	21	1.97
13837201--13837281	42	1.9	42	94	0	144	24	29	20	24	1.99
13836494--13837894	699	2.0	699	96	0	2590	32	23	12	31	1.92
13839747--13839809	20	3.2	20	90	2	101	30	41	3	25	1.71
13839808--13839926	43	2.8	43	89	2	168	19	37	21	21	1.94
13842669--13842798	42	3.1	42	84	2	181	20	34	18	26	1.95
13844239--13845878	181	9.1	180	78	3	1489	37	14	11	35	1.83
13844163--13845850	362	4.7	361	81	5	1699	37	14	11	35	1.83
13844241--13845842	543	3.0	535	81	4	1725	37	15	11	35	1.83
13845959--13847150	182	6.6	182	78	3	1137	36	12	13	37	1.83
13845959--13847150	545	2.2	545	80	4	1346	36	12	13	37	1.83
13852782--13852938	77	2.0	77	93	2	271	39	8	19	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13856313--13856765	61	7.4	61	89	1	651	26	17	29	26	1.98
13856318--13856765	243	1.8	243	89	2	713	26	17	30	26	1.97
13857717--13857778	21	2.9	21	87	2	79	30	17	22	29	1.97
13857971--13858030	23	2.6	23	94	0	102	33	41	1	23	1.64
13868840--13868949	43	2.6	43	85	5	143	20	37	18	23	1.94
13872209--13872365	42	3.7	41	87	3	197	26	31	22	19	1.98
13872209--13872365	84	1.9	84	86	2	226	26	31	22	19	1.98
13881950--13882059	43	2.6	43	85	2	141	20	34	20	25	1.96
13882657--13882700	20	2.2	21	88	8	65	38	13	25	22	1.91
13891040--13891087	2	24.0	2	100	0	96	50	0	0	50	1.00
13891091--13891172	42	2.0	42	95	0	146	24	21	30	23	1.99
13891087--13891242	43	3.7	43	82	2	174	25	20	32	22	1.98
13895226--13895261	18	1.9	18	88	5	54	30	11	16	41	1.83
13896758--13897908	182	6.4	181	76	9	1007	35	12	13	38	1.82
13897023--13897515	171	2.8	171	80	7	447	35	12	15	37	1.84
13897924--13897982	31	1.9	31	96	0	109	33	13	13	38	1.84
13899277--13899350	35	2.1	35	87	5	105	28	36	12	22	1.90
13901174--13903219	182	11.3	183	78	6	1910	35	12	14	37	1.84
13900726--13903198	363	6.8	363	79	6	2271	34	12	15	37	1.84
13900726--13903210	545	4.6	543	79	6	2513	34	12	15	37	1.84
13906386--13906479	39	2.4	39	85	7	129	34	25	17	23	1.96
13913143--13913195	28	1.9	27	92	3	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13916644--13916681	20	1.9	20	84	10	51	13	21	5	60	1.52
13920475--13920526	28	1.9	27	84	7	70	28	21	19	30	1.97
13920572--13920617	20	2.3	20	92	0	74	43	23	4	28	1.73
13924736--13924775	5	8.0	5	91	0	62	37	22	0	40	1.54
13926258--13926283	13	2.0	13	100	0	52	46	7	0	46	1.31
13927115--13927152	20	1.9	20	84	10	51	13	21	5	60	1.52
13927411--13927463	28	1.9	27	88	3	79	26	18	20	33	1.96
13927508--13927553	20	2.3	20	92	0	74	43	23	4	28	1.73
13933269--13934114	183	4.7	177	75	8	680	36	12	13	36	1.84
13935453--13935501	20	2.5	20	72	0	53	30	6	40	22	1.78
13936272--13937010	365	2.0	364	81	1	870	35	12	13	38	1.83
13936178--13937017	182	4.7	183	79	3	848	35	12	13	39	1.82
13939123--13939163	21	1.9	22	85	5	57	14	26	7	51	1.69
13949212--13949259	22	2.3	22	80	16	57	37	22	0	39	1.55
13961156--13961243	43	2.0	43	97	0	167	38	19	9	32	1.83
13976212--13976477	34	7.6	35	83	4	306	31	26	10	31	1.89
13976212--13976473	70	3.8	69	86	1	319	32	26	9	31	1.89
13976419--13976493	35	2.1	35	87	7	107	34	30	9	25	1.87
13976508--13976585	34	2.3	34	88	2	111	39	33	7	19	1.80
13976793--13976845	26	2.1	25	93	6	90	7	58	7	24	1.51
13985278--13985316	5	7.6	5	91	2	60	0	23	0	76	0.78
13985278--13985325	15	3.1	15	90	6	69	0	27	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13985485--13985714	70	3.3	69	86	4	286	30	26	10	32	1.90
13985485--13985714	34	6.6	34	87	6	266	30	26	10	32	1.90
13987994--13988088	40	2.4	38	87	3	127	23	37	15	23	1.93
13987998--13988088	38	2.3	40	86	3	123	24	39	14	21	1.91
13991254--13993215	182	10.8	182	78	3	1899	36	11	14	37	1.82
13991254--13993214	362	5.4	359	78	4	1841	36	11	14	37	1.82
13993750--13993791	19	2.2	19	83	8	50	47	9	30	11	1.72
13999954--14000129	42	4.2	42	75	3	149	23	31	19	26	1.98
14005124--14005197	35	2.1	36	87	2	105	39	12	8	40	1.72
14005176--14005234	22	2.7	22	91	0	91	45	6	10	37	1.65
14005144--14005212	35	2.0	35	88	0	102	44	8	7	39	1.63
14008825--14008857	11	2.7	13	81	18	52	0	36	0	63	0.95
14014036--14014171	38	3.6	38	92	4	204	19	17	41	22	1.91
14017808--14017847	21	1.9	21	85	10	55	70	5	5	20	1.26
14019146--14019191	20	2.3	20	88	3	67	63	17	6	13	1.50
14024335--14024367	2	16.5	2	100	0	66	51	0	0	48	1.00
14024948--14024979	2	16.0	2	100	0	64	0	50	0	50	1.00
14026709--14026737	8	3.6	8	100	0	58	24	0	0	75	0.80
14030256--14030311	29	1.9	28	89	10	78	53	12	14	17	1.70
14033389--14033429	21	1.9	22	95	5	75	17	21	7	53	1.67
14038502--14038534	12	2.6	13	90	9	59	0	30	0	69	0.88
14043718--14043777	25	2.4	25	88	0	93	25	13	33	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14060225--14060249	13	1.9	13	100	0	50	48	0	0	52	1.00
14062551--14062592	19	2.2	19	91	0	66	21	35	9	33	1.86
14066192--14066221	15	2.0	15	100	0	60	26	40	0	33	1.57
14070433--14070482	17	3.1	17	81	16	61	64	8	0	28	1.22
14072344--14072488	60	2.4	60	83	2	184	34	21	19	24	1.96
14072845--14072954	43	2.6	43	88	2	150	20	37	19	23	1.94
14075110--14075273	49	3.3	49	86	0	202	25	34	15	24	1.95
14078985--14079183	29	7.0	29	79	7	203	37	13	10	39	1.78
14078974--14079183	57	3.7	57	83	4	244	38	12	9	39	1.76
14078954--14079172	86	2.5	86	84	8	250	37	12	8	41	1.74
14080917--14080957	19	2.2	19	86	0	55	21	24	24	29	1.99
14089487--14089513	14	1.9	14	100	0	54	59	11	0	29	1.32
14091449--14091488	17	2.4	17	86	0	53	27	17	25	30	1.97
14097958--14098007	23	2.1	24	85	7	66	16	26	30	28	1.96
14098011--14098057	23	2.0	23	84	8	60	19	27	21	31	1.97
14098077--14098117	18	2.3	18	87	4	57	51	4	2	41	1.36
14098141--14098208	35	1.9	35	85	8	93	51	11	2	33	1.54
14100082--14100188	42	2.5	42	89	1	151	25	18	33	22	1.97
14100483--14100554	30	2.4	30	92	0	117	26	22	23	27	1.99
14102010--14102239	57	4.0	56	79	10	223	36	12	10	40	1.78
14102020--14102236	29	7.5	28	79	10	206	39	11	10	38	1.77
14102010--14102237	88	2.6	87	82	7	259	37	12	10	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14106098--14106144	20	2.4	19	80	13	51	48	6	29	14	1.69
14108446--14108527	33	2.4	33	89	4	119	30	21	12	35	1.90
14117287--14117339	19	2.8	20	74	11	65	24	41	16	16	1.89
14117237--14117339	38	2.6	40	89	3	156	23	40	17	18	1.91
14124312--14124492	73	2.5	71	78	13	172	39	20	21	18	1.93
14134434--14134473	20	2.0	20	85	9	55	15	27	12	45	1.82
14135149--14135219	37	1.9	37	91	0	115	29	9	35	25	1.88
14135488--14135530	22	2.0	22	90	4	70	32	25	20	20	1.97
14138456--14138498	19	2.3	19	88	4	70	51	0	4	44	1.22
14139362--14139456	34	2.6	35	87	11	122	27	9	36	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91