genome.fa.s3.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  86  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948079--32948103	2	12.5	2	100	0	50	0	52	0	48	1.00
32957286--32957341	25	2.2	24	79	14	60	3	8	21	66	1.35
32975359--32975423	26	2.5	26	85	12	80	35	1	1	61	1.15
32978763--32978801	18	2.1	19	86	13	55	43	0	2	53	1.14
32993513--32993545	12	2.5	14	90	9	52	60	0	39	0	0.97
32998394--32998461	2	34.0	2	90	0	109	51	0	1	47	1.09
33008544--33008569	2	13.0	2	100	0	52	50	0	0	50	1.00
33020735--33020771	2	18.5	2	100	0	74	51	0	0	48	1.00
33025823--33025890	21	3.2	21	82	2	82	23	11	22	42	1.86
33025911--33025962	23	2.3	23	86	0	77	38	28	9	23	1.86
33025919--33026022	23	4.4	23	77	10	95	34	24	12	28	1.92
33026021--33026063	21	2.0	21	90	0	68	41	20	11	25	1.86
33026005--33026180	47	3.7	47	76	14	182	37	23	13	25	1.91
33025931--33026197	95	2.7	95	82	6	286	37	22	12	26	1.91
33026005--33026219	73	3.0	71	82	8	233	37	23	12	26	1.90
33025988--33026213	26	9.2	26	72	16	153	37	23	12	26	1.91
33035773--33035807	18	2.0	17	88	5	52	22	17	8	51	1.72
33036548--33036669	61	2.0	61	100	0	244	34	11	18	36	1.86
33047014--33047048	18	1.9	18	94	0	61	0	37	0	62	0.95
33053851--33053879	12	2.5	12	94	5	51	34	0	0	65	0.93
33054144--33054209	30	2.2	30	89	2	98	28	0	7	63	1.21
33064621--33064668	2	24.0	2	95	0	87	47	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33078466--33078491	2	13.0	2	100	0	52	50	0	0	50	1.00
33090781--33090850	35	2.0	35	97	0	131	31	14	15	38	1.88
33094728--33094795	30	2.3	30	82	2	75	30	7	7	54	1.55
33100234--33100271	15	2.3	17	86	13	53	47	5	0	47	1.24
33102692--33102777	24	3.6	24	79	0	82	17	17	43	22	1.88
33116998--33117074	27	2.8	27	86	2	100	38	10	11	38	1.76
33116992--33117205	28	7.8	28	71	6	150	35	8	14	41	1.77
33116995--33117176	55	3.3	56	77	4	190	36	9	13	40	1.77
33116995--33117204	55	3.8	55	76	5	183	35	9	14	40	1.77
33124946--33124991	18	2.6	18	80	10	58	17	28	2	52	1.56
33130947--33131026	11	7.3	11	71	18	51	32	1	2	63	1.15
33133350--33133382	14	2.4	14	85	14	50	81	9	6	3	0.95
33133681--33133714	16	2.1	16	89	10	52	47	17	8	26	1.77
33138551--33138620	26	2.6	27	79	16	83	38	2	8	50	1.48
33138554--33138659	27	4.1	25	76	13	90	37	2	11	48	1.54
33138577--33138653	25	2.9	27	78	9	86	37	2	10	49	1.51
33139179--33139497	118	2.7	118	94	1	541	32	5	0	60	1.24
33154386--33154415	11	2.7	11	94	0	51	50	0	0	50	1.00
33155789--33155842	15	3.2	18	80	17	71	20	5	0	74	1.02
33155945--33155969	2	12.5	2	100	0	50	52	0	0	48	1.00
33162431--33162483	24	2.2	24	83	3	63	50	1	7	39	1.41
33165053--33165100	20	2.2	22	80	20	57	72	2	18	6	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33167929--33167983	2	29.5	2	77	14	55	50	0	0	49	1.00
33167929--33167991	16	3.9	16	78	11	67	49	0	0	50	1.00
33179793--33179829	18	2.1	18	89	0	56	27	0	0	72	0.84
33179932--33179973	21	2.0	22	85	4	59	21	2	4	71	1.16
33179916--33179965	25	2.0	25	85	11	68	22	4	8	66	1.35
33180991--33181020	2	15.0	2	100	0	60	50	0	0	50	1.00
33194564--33194626	15	4.4	14	76	11	65	44	3	1	50	1.27
33199652--33199676	12	2.1	12	100	0	50	28	16	32	24	1.96
33202344--33202407	28	2.4	28	87	10	89	60	1	0	37	1.06
33204168--33204216	25	1.9	25	83	4	62	12	8	26	53	1.66
33208236--33208274	19	2.1	18	85	4	51	56	0	2	41	1.13
33212875--33212940	23	2.8	24	67	15	66	50	9	4	36	1.55
33224300--33224356	22	2.4	25	80	16	68	49	3	0	47	1.18
33224300--33224359	23	2.5	25	79	17	74	50	3	0	46	1.18
33224298--33224395	47	2.2	46	77	12	105	54	3	0	42	1.16
33226053--33226110	16	3.7	16	81	4	73	50	3	0	46	1.18
33230323--33230380	31	1.9	31	82	6	75	55	0	12	32	1.37
33243903--33243944	18	2.4	18	80	4	50	57	0	0	42	0.99
33248199--33248272	35	2.2	33	92	7	123	44	8	8	39	1.64
33248199--33248272	33	2.2	34	90	7	116	44	8	8	39	1.64
33251022--33251066	2	25.0	2	79	20	55	48	0	0	51	1.00
33271578--33271643	28	2.3	31	79	12	86	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33271888--33272026	64	2.1	65	93	5	237	54	6	1	36	1.35
33274646--33274783	74	1.9	73	100	0	267	23	21	13	40	1.88
33275762--33275803	2	21.0	2	85	9	59	50	0	2	47	1.14
33284944--33284999	2	29.5	2	83	16	75	48	0	0	50	1.01
33293323--33293405	33	2.5	33	80	7	105	40	12	3	43	1.59
33294945--33295046	45	2.3	44	81	5	116	61	0	3	33	1.21
33295233--33295266	11	3.1	11	87	12	52	61	0	0	38	0.96
33295850--33295887	19	2.1	19	90	5	60	65	0	15	18	1.27
33298652--33299026	187	2.0	187	88	0	561	30	17	23	28	1.97
33320587--33320763	96	1.8	96	85	4	250	36	5	1	55	1.33
33323842--33323939	45	2.2	45	84	0	124	33	17	16	32	1.92
33323870--33323969	45	2.2	45	84	7	123	34	20	17	29	1.95
33323936--33324017	24	3.4	24	76	6	85	41	20	15	21	1.90
33324023--33324199	29	6.4	28	73	13	82	38	15	12	33	1.85
33331308--33331345	2	20.5	2	84	15	55	44	0	0	55	0.99
33331858--33331886	2	15.0	2	92	7	51	0	51	0	48	1.00
33333000--33333139	71	2.0	71	89	0	217	35	15	0	48	1.50
33333093--33333491	222	1.8	220	84	3	550	33	14	7	45	1.72
33338801--33338849	2	24.5	2	100	0	98	48	0	0	51	1.00
33345261--33345317	25	2.3	24	80	11	62	42	3	24	29	1.71
33359691--33359715	2	12.5	2	100	0	50	48	0	52	0	1.00
33367169--33367226	2	28.0	2	86	10	64	43	1	48	5	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33367571--33367599	2	14.5	2	100	0	58	48	0	0	51	1.00
33393652--33393743	2	46.5	2	89	6	143	46	1	1	50	1.15
33405920--33406063	26	5.6	26	73	8	98	50	9	6	34	1.59
33430079--33430121	3	14.3	3	95	0	77	67	2	0	30	1.03
33430001--33430319	161	2.0	158	98	1	611	50	7	5	35	1.54
33430240--33430282	3	14.3	3	95	0	77	67	2	0	30	1.03
33430750--33432450	251	6.9	251	81	5	1815	48	6	9	35	1.61
33430770--33432450	739	2.3	734	83	5	1983	48	6	9	35	1.61
33430759--33432440	488	3.4	488	82	5	1882	48	6	9	35	1.62
33432018--33432881	434	2.0	430	98	0	1656	49	5	9	35	1.59
33433091--33433153	17	3.5	17	72	19	56	63	1	1	33	1.13
33435230--33435257	2	14.0	2	100	0	56	50	0	50	0	1.00
33435285--33435324	18	2.2	18	86	8	55	37	2	45	15	1.59
33440782--33440837	28	2.0	28	96	0	103	17	26	17	37	1.93
33460139--33460260	58	2.1	58	84	7	156	43	4	4	47	1.44
33460374--33460547	91	1.9	90	92	1	294	50	7	6	35	1.57
33460603--33460723	53	2.3	52	80	8	136	37	4	1	57	1.28
33463082--33463298	28	7.9	28	73	3	179	41	7	7	42	1.63
33463083--33463291	55	3.8	54	78	2	202	42	7	8	42	1.63
33463082--33463291	110	1.9	110	87	0	303	42	7	8	41	1.63
33471056--33471100	20	2.3	20	96	3	83	8	17	20	53	1.70
33475496--33475701	102	2.0	102	86	3	290	29	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33505112--33505140	14	2.0	15	93	6	51	13	6	0	79	0.93
33505341--33505436	30	3.3	29	81	7	108	37	9	13	39	1.77
33505420--33505652	45	5.3	45	70	9	183	33	16	15	35	1.90
33505428--33505533	43	2.4	44	85	3	142	32	16	13	37	1.88
33505516--33505565	21	2.4	21	93	0	82	42	20	12	26	1.86
33505516--33505577	21	3.0	21	83	4	72	40	19	11	29	1.86
33515063--33515131	28	2.4	28	81	13	86	36	5	4	53	1.45
33549197--33549308	58	1.9	58	83	0	143	24	25	16	33	1.96
33551017--33551063	22	2.1	22	84	4	58	42	2	19	36	1.63
33551759--33551787	2	15.0	2	92	7	51	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91