genome.fa.s3.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  88  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34155243--34155285	2	22.5	2	90	9	72	51	0	0	48	1.00
34155299--34155336	2	19.0	2	100	0	76	50	0	0	50	1.00
34157286--34157336	24	2.2	22	83	13	59	45	0	0	54	0.99
34158886--34158934	2	24.5	2	95	0	89	51	2	0	46	1.12
34162791--34162834	22	2.1	20	83	8	52	2	25	2	70	1.10
34193617--34193713	49	2.0	49	97	0	185	48	8	6	37	1.58
34207312--34207343	2	16.0	2	93	0	55	46	3	0	50	1.17
34210801--34210910	56	2.0	56	92	0	184	25	15	20	38	1.92
34213447--34213622	32	6.3	28	72	16	89	36	14	10	38	1.80
34213446--34213623	26	6.3	29	75	14	135	36	14	10	38	1.80
34213558--34213690	24	5.4	24	70	18	85	33	13	12	39	1.83
34213495--34213660	75	2.1	75	82	7	188	33	15	12	39	1.84
34213829--34213860	13	2.4	13	94	5	55	53	0	0	46	1.00
34214806--34214838	5	6.6	5	100	0	66	81	0	18	0	0.68
34218301--34218540	68	3.5	67	75	18	208	39	0	3	56	1.19
34218338--34218458	26	5.0	26	70	20	84	41	0	1	57	1.09
34218234--34218451	112	1.9	112	80	9	248	42	1	1	54	1.19
34218289--34218556	139	1.9	139	87	7	393	41	0	2	55	1.20
34218496--34218642	27	5.7	27	67	18	98	42	0	3	50	1.19
34218609--34218727	45	2.8	44	74	11	124	36	0	3	59	1.14
34218467--34218692	101	2.2	100	85	7	298	38	0	3	55	1.16
34218612--34218772	83	1.9	83	81	7	193	37	0	3	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34218829--34218882	22	2.5	22	81	0	63	46	0	1	51	1.11
34218867--34218915	25	2.0	25	91	0	80	44	0	0	55	0.99
34219104--34219137	17	2.1	16	88	5	50	29	20	17	32	1.96
34221289--34221328	20	2.0	20	86	13	57	35	27	10	27	1.89
34221397--34221444	2	24.0	2	100	0	96	50	0	50	0	1.00
34221518--34221561	2	22.0	2	100	0	88	50	0	50	0	1.00
34229535--34229633	49	2.0	49	98	0	189	29	11	26	33	1.91
34233991--34234051	19	3.3	19	71	15	56	36	0	1	62	1.05
34239609--34239651	15	2.9	15	78	0	50	39	4	20	34	1.74
34239806--34239947	15	9.9	15	62	21	54	33	2	1	63	1.15
34239930--34240021	33	2.7	33	80	14	107	30	3	0	66	1.08
34274806--34274882	2	40.0	2	87	12	117	51	0	0	46	1.00
34274793--34274882	45	2.0	44	95	2	162	53	1	0	44	1.08
34281795--34281826	2	16.0	2	93	0	55	46	0	3	50	1.17
34288136--34288269	69	1.9	69	93	0	232	32	11	27	29	1.91
34295329--34295366	18	2.1	18	85	9	51	34	5	2	57	1.35
34300101--34300137	17	2.2	18	90	9	60	29	0	5	64	1.15
34302251--34302286	2	18.0	2	94	0	63	47	0	2	50	1.15
34306290--34306331	18	2.4	18	96	4	77	23	0	0	76	0.79
34306297--34306336	10	4.3	10	84	15	59	30	0	0	70	0.88
34306793--34306834	22	2.0	21	86	13	59	61	2	0	35	1.09
34309406--34309471	30	2.2	30	100	0	132	40	24	24	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34320247--34320290	2	22.5	2	86	4	63	50	4	45	0	1.22
34345601--34345634	2	17.0	2	100	0	68	0	50	0	50	1.00
34346082--34346126	2	23.0	2	90	4	74	46	0	53	0	1.00
34354209--34354242	7	4.9	7	100	0	68	14	0	0	85	0.60
34356463--34356528	31	2.2	31	88	2	98	36	12	4	46	1.61
34358587--34358620	2	17.0	2	100	0	68	50	0	0	50	1.00
34385092--34385135	2	23.5	2	86	13	67	47	0	52	0	1.00
34385208--34385248	2	20.5	2	100	0	82	48	0	51	0	1.00
34385454--34385497	22	2.0	21	86	4	61	18	31	0	50	1.47
34398232--34398261	15	2.0	15	100	0	60	13	13	26	46	1.80
34403171--34403218	13	3.5	13	75	8	51	66	8	0	25	1.19
34403167--34403220	28	2.0	28	92	7	94	66	9	0	24	1.20
34403493--34403563	26	3.0	22	73	16	63	50	0	0	49	1.00
34416350--34416385	3	12.0	3	100	0	72	66	0	33	0	0.92
34417194--34417253	30	2.0	30	90	6	95	51	3	6	38	1.45
34424749--34424786	2	19.0	2	100	0	76	50	0	50	0	1.00
34451175--34451221	2	23.5	2	100	0	94	51	0	0	48	1.00
34451267--34451315	2	24.5	2	100	0	98	51	0	0	48	1.00
34469375--34469401	2	13.5	2	100	0	54	48	0	0	51	1.00
34471577--34471617	15	2.7	15	88	0	55	51	2	36	9	1.48
34487301--34487400	50	2.0	50	100	0	200	46	16	14	24	1.83
34490001--34490077	22	3.5	22	87	7	104	33	3	7	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34490120--34490184	23	2.8	23	76	0	76	30	12	24	32	1.92
34491115--34491195	16	4.9	16	69	16	51	54	2	0	43	1.13
34491155--34491215	23	2.9	22	73	22	67	55	1	0	42	1.09
34491146--34491212	23	3.1	21	74	17	66	56	1	0	41	1.08
34491135--34491203	17	4.1	17	71	19	56	55	2	0	42	1.15
34491255--34491309	27	2.1	27	90	6	87	52	3	0	43	1.18
34505333--34505372	19	2.0	21	85	9	57	47	2	0	50	1.14
34509185--34509217	3	11.0	3	100	0	66	33	0	33	33	1.58
34527919--34528053	62	2.2	62	94	1	236	28	15	20	35	1.93
34532279--34532331	26	2.0	26	100	0	106	69	11	7	11	1.35
34546239--34546278	2	20.0	2	100	0	80	50	0	0	50	1.00
34550501--34550527	2	13.5	2	100	0	54	48	0	0	51	1.00
34563751--34563802	27	1.9	27	84	7	70	26	0	7	65	1.20
34564226--34564280	21	2.4	24	80	16	64	38	1	7	52	1.40
34570352--34570376	2	12.5	2	100	0	50	48	0	0	52	1.00
34576152--34576187	2	18.0	2	100	0	72	50	0	50	0	1.00
34588358--34588387	2	15.0	2	100	0	60	50	0	50	0	1.00
34625565--34625612	24	2.0	24	95	0	87	39	4	27	29	1.75
34637296--34637322	2	13.5	2	100	0	54	51	0	48	0	1.00
34638848--34638884	19	1.9	19	88	0	56	83	2	5	8	0.88
34639299--34639388	38	2.3	40	76	19	102	55	2	0	42	1.12
34639452--34639492	21	1.9	22	85	5	57	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34640459--34640538	32	2.4	33	83	4	90	30	1	1	67	1.06
34652267--34652300	8	4.1	8	88	3	50	14	0	5	79	0.91
34652504--34652706	108	1.9	108	88	2	309	43	3	15	36	1.65
34653013--34653059	18	2.6	18	96	0	85	44	25	4	25	1.72
34653411--34653449	20	1.9	21	85	15	55	33	15	2	48	1.58
34658599--34658646	25	1.9	25	83	8	62	56	4	2	37	1.30
34660733--34660773	12	3.5	12	81	15	50	70	0	26	2	0.99
34674018--34674114	2	45.5	2	93	4	131	6	46	0	46	1.28
34684917--34684974	28	2.1	28	83	6	73	29	3	1	65	1.19
34687897--34687932	18	1.9	18	88	5	54	66	2	2	27	1.19
34719972--34720042	36	2.0	36	94	0	124	19	25	16	38	1.93
34726881--34726985	30	3.6	29	71	15	81	58	3	2	35	1.31
34731539--34731624	27	3.1	27	93	1	136	40	27	4	26	1.76
34746219--34746261	17	2.9	14	78	18	50	58	16	16	9	1.63
34747541--34747666	59	2.1	60	86	4	175	30	14	25	29	1.95
34756868--34756973	30	3.6	29	70	9	81	50	4	11	33	1.59
34772363--34772397	2	17.5	2	100	0	70	51	0	0	48	1.00
34774875--34774916	23	1.9	21	85	9	57	80	7	7	4	1.00
34778487--34778538	2	26.0	2	100	0	104	50	0	0	50	1.00
34794738--34794776	6	6.5	6	96	0	69	71	0	28	0	0.86
34795189--34795235	23	2.0	24	84	8	62	2	21	8	68	1.27
34795418--34795453	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34797475--34797515	21	2.0	21	95	0	73	29	19	17	34	1.94
34807769--34807820	15	3.5	15	81	2	70	51	0	3	44	1.19
34809899--34809989	43	2.1	43	97	0	173	3	50	2	43	1.30
34812147--34812174	2	14.0	2	100	0	56	50	0	0	50	1.00
34826334--34827050	238	3.0	238	99	0	1425	25	11	17	44	1.83
34829956--34830182	117	1.9	117	96	0	418	36	13	29	20	1.91
34830065--34831762	285	6.0	285	93	0	2763	36	15	27	20	1.93
34848237--34848407	26	6.7	26	64	22	76	65	0	4	29	1.13
34848318--34848407	33	2.8	32	86	3	110	67	0	2	30	1.02
34848438--34848493	29	2.0	29	89	3	87	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91