genome.fa.s3.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  6  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796594--1796648	28	2.0	27	86	10	76	9	12	12	65	1.47
1799787--1799977	96	2.0	96	95	0	346	28	20	13	38	1.90
1803586--1803632	10	4.4	11	82	10	53	80	2	2	14	0.89
1804422--1804470	25	2.0	24	88	4	71	57	8	0	34	1.29
1814490--1814545	27	2.1	27	100	0	112	7	25	21	46	1.76
1816033--1816063	4	8.0	4	92	7	55	77	0	0	22	0.77
1834147--1834412	87	3.1	85	89	3	379	47	7	6	38	1.57
1834581--1834634	28	1.9	28	88	0	81	44	14	9	31	1.77
1838603--1838645	18	2.3	18	80	4	50	25	23	23	27	2.00
1839692--1839802	53	2.1	53	86	0	150	46	9	11	32	1.71
1840167--1840307	69	2.0	69	91	0	228	39	18	12	29	1.87
1840627--1840680	23	2.4	23	90	3	83	48	5	0	46	1.25
1848883--1848907	12	2.1	12	100	0	50	68	8	24	0	1.16
1853956--1854000	22	2.0	21	84	16	56	57	0	2	40	1.11
1857289--1857341	17	3.2	16	78	13	54	45	1	3	49	1.31
1871461--1871513	18	2.9	18	97	0	97	49	0	3	47	1.19
1871754--1871804	21	2.4	20	83	9	57	50	0	0	49	1.00
1877998--1878037	20	2.2	20	86	13	59	42	0	0	57	0.98
1878009--1878057	25	2.0	25	84	8	64	48	0	2	48	1.12
1892158--1892200	22	2.0	22	86	4	61	55	4	16	23	1.59
1893653--1893701	23	2.1	23	88	3	71	40	4	10	44	1.57
1893661--1893720	23	2.9	20	83	11	68	41	5	8	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894676--1894700	13	1.9	13	100	0	50	80	8	0	12	0.92
1894953--1895027	15	4.4	17	78	14	84	84	0	16	0	0.63
1894956--1895027	27	2.6	27	81	18	87	84	0	15	0	0.62
1894956--1895028	31	2.4	30	88	6	103	83	0	16	0	0.64
1895284--1895423	7	18.6	7	65	20	52	70	1	6	21	1.17
1895286--1895366	33	2.4	33	77	6	83	70	2	3	23	1.16
1895284--1895348	20	3.2	20	80	8	62	72	0	4	23	1.03
1895672--1895718	19	2.5	18	83	10	58	80	6	0	12	0.88
1901102--1901126	13	1.9	13	100	0	50	80	8	0	12	0.92
1901379--1901451	6	11.5	6	84	10	92	80	0	17	1	0.78
1901377--1901451	28	2.8	27	84	8	82	80	0	18	1	0.79
1901736--1901785	16	3.1	16	82	5	55	66	0	2	32	1.03
1901739--1901866	20	6.8	19	71	19	74	68	0	5	25	1.16
1902056--1902092	17	2.1	19	85	14	53	70	0	2	27	1.01
1902101--1902140	19	2.2	18	86	4	53	82	7	0	10	0.84
1910627--1911109	59	8.1	60	86	1	634	31	13	18	36	1.89
1910627--1911095	119	4.0	119	90	1	701	31	13	18	36	1.89
1910634--1911109	178	2.7	177	86	1	641	31	12	18	36	1.89
1911924--1912006	12	6.8	12	81	14	91	80	0	18	1	0.77
1911925--1912005	31	2.7	30	81	12	103	81	0	17	1	0.76
1911934--1912000	21	3.1	21	78	18	84	82	0	16	1	0.75
1912381--1912448	18	3.8	17	78	18	59	73	0	7	19	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912604--1912689	12	7.3	13	70	18	55	75	2	0	22	0.91
1912609--1912689	17	4.6	17	72	20	60	75	2	0	22	0.92
1912602--1912691	28	3.2	28	79	14	96	76	2	0	21	0.89
1912607--1912690	30	2.9	30	79	13	95	75	2	0	22	0.92
1914244--1914388	74	2.0	73	86	8	206	17	27	8	46	1.77
1918078--1918118	20	2.0	20	95	0	73	41	2	9	46	1.50
1918142--1918172	7	4.4	7	95	0	53	51	3	0	45	1.17
1918178--1918217	16	2.4	18	84	16	59	45	0	5	50	1.23
1918137--1918246	34	3.3	31	77	14	96	48	2	6	42	1.43
1918219--1918275	18	3.0	19	80	12	64	47	7	8	36	1.62
1918437--1918467	16	1.9	16	93	0	53	61	3	3	32	1.28
1918989--1919093	50	2.1	50	85	0	138	13	5	33	47	1.66
1923122--1923198	34	2.3	33	86	4	102	37	20	2	38	1.67
1924486--1924544	2	29.5	2	84	6	75	42	0	3	52	1.18
1924873--1924922	26	2.0	26	84	4	66	38	10	10	42	1.72
1931127--1931164	15	2.6	14	88	8	58	31	2	2	63	1.22
1933902--1933929	2	14.0	2	100	0	56	50	0	0	50	1.00
1946647--1946691	18	2.4	19	82	14	58	24	4	0	71	1.05
1946647--1946692	14	3.4	13	85	14	58	26	4	0	69	1.07
1946612--1946692	39	2.0	39	80	4	90	25	4	1	67	1.18
1948682--1948742	27	2.3	27	85	5	79	31	45	16	6	1.73
1950102--1950142	2	20.5	2	94	0	73	48	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952433--1952468	16	2.1	19	85	15	51	44	0	0	55	0.99
1953262--1953311	18	2.7	18	85	14	59	26	4	0	70	1.05
1953262--1953311	22	2.2	23	86	10	68	26	4	0	70	1.05
1953262--1953295	14	2.7	12	86	13	50	26	0	0	73	0.83
1956820--1956929	48	2.3	48	87	0	157	29	46	19	5	1.72
1956892--1956952	27	2.3	27	88	5	88	32	45	14	6	1.71
1966989--1967039	5	10.4	5	85	6	61	74	0	23	1	0.92
1967048--1967109	25	2.5	25	80	17	76	45	11	29	14	1.80
1969125--1969190	22	3.0	22	93	0	105	28	7	22	40	1.81
1971482--1971506	7	3.6	7	100	0	50	48	0	16	36	1.46
1972638--1972683	19	2.4	20	82	10	60	54	0	2	43	1.12
1973864--1973925	25	2.5	25	78	17	67	46	11	27	14	1.78
1978075--1978138	32	2.0	32	93	0	110	29	15	3	51	1.59
1979738--1979910	74	2.4	73	87	5	235	37	14	22	25	1.92
1980674--1980719	19	2.4	20	82	10	60	54	0	2	43	1.12
1981121--1981158	20	1.9	20	100	0	76	28	5	21	44	1.73
1982404--1982428	13	1.9	13	100	0	50	44	0	8	48	1.32
1984181--1984225	20	2.2	20	100	0	90	24	13	22	40	1.90
1987266--1987298	14	2.4	14	94	0	57	66	3	15	15	1.37
1988600--1988652	26	2.0	26	82	13	65	20	3	1	73	1.08
1989242--1989732	245	2.0	245	96	1	905	42	11	11	34	1.77
1990637--1990746	48	2.3	48	87	0	157	29	46	19	5	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1990709--1990769	27	2.3	27	88	5	88	32	45	14	6	1.71
1996731--1996758	14	2.0	14	100	0	56	28	28	0	42	1.56
2008291--2008354	32	2.0	32	90	0	101	28	15	1	54	1.50
2011312--2011371	22	2.6	22	79	7	57	58	13	5	23	1.55
2034804--2034829	3	8.7	3	100	0	52	69	0	0	30	0.89
2042878--2043118	131	1.8	131	90	7	391	16	18	16	48	1.81
2043036--2043230	69	3.0	69	81	9	214	11	16	18	53	1.71
2043577--2043614	16	2.4	16	95	0	67	36	7	23	31	1.84
2046904--2046946	21	2.0	23	86	9	63	20	4	13	60	1.51
2047792--2047836	17	2.7	16	83	10	54	71	0	28	0	0.87
2047909--2047971	4	17.5	4	72	21	59	71	0	28	0	0.86
2047846--2048051	79	2.6	78	84	7	281	63	2	33	0	1.14
2047907--2047971	17	3.7	17	88	12	96	70	0	29	0	0.87
2047909--2047971	28	2.2	29	88	2	92	71	0	28	0	0.86
2047988--2048026	4	10.2	4	83	10	55	71	0	28	0	0.86
2048006--2048056	11	4.5	11	83	11	50	74	1	23	0	0.92
2057405--2058323	60	15.5	60	82	5	884	34	13	17	34	1.89
2058826--2058864	17	2.4	16	86	4	51	66	0	33	0	0.92
2058881--2058941	24	2.7	22	72	25	56	72	0	27	0	0.85
2058890--2059013	17	6.6	18	73	20	103	65	1	32	0	1.08
2058882--2058941	28	2.2	27	84	3	75	71	0	28	0	0.86
2058880--2059067	79	2.3	79	87	3	268	64	2	31	2	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2058960--2059022	28	2.2	29	86	8	85	68	0	30	1	0.99
2064867--2064974	45	2.4	45	83	6	130	36	19	15	28	1.93
2064911--2065248	69	5.0	68	71	9	226	33	19	18	28	1.95
2065088--2065143	24	2.3	24	84	0	67	41	19	12	26	1.87
2065025--2065280	45	5.7	45	72	10	175	32	19	18	29	1.96
2064890--2065249	135	2.7	134	84	3	445	33	19	18	29	1.95
2064887--2065236	66	5.2	65	73	8	236	32	19	18	30	1.96
2065175--2065280	45	2.4	45	91	0	176	30	19	21	28	1.98
2065266--2065349	29	2.8	31	80	7	109	39	14	14	32	1.86
2070352--2070390	20	1.9	20	94	5	69	43	20	5	30	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91