genome.fa.s3.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  38  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13172334--13172370	18	2.1	18	89	0	56	0	35	0	64	0.94
13174957--13175209	81	3.1	81	84	1	337	19	18	33	28	1.96
13176628--13177312	86	7.9	86	86	3	940	26	31	21	20	1.98
13176628--13177312	176	3.9	173	87	3	955	26	31	21	20	1.98
13176629--13177312	262	2.6	260	91	0	1071	26	31	21	20	1.98
13180109--13180149	21	2.0	21	90	0	64	24	39	12	24	1.89
13180827--13181145	31	10.3	31	88	0	458	39	17	15	27	1.90
13181401--13181521	63	1.9	62	85	5	163	34	13	31	20	1.91
13181479--13181520	9	4.7	9	77	11	50	33	4	40	21	1.74
13182436--13182504	15	4.7	15	68	13	63	36	4	4	55	1.40
13183573--13183698	47	2.6	48	96	1	227	37	3	11	47	1.58
13188383--13188531	35	4.5	33	77	9	140	23	12	26	36	1.91
13188383--13188531	67	2.2	67	92	0	244	23	12	26	36	1.91
13188383--13188558	67	2.6	67	86	5	241	25	12	25	36	1.91
13191627--13191670	2	21.5	2	90	4	70	47	4	0	47	1.22
13192047--13192136	25	3.5	25	86	6	90	20	16	35	27	1.94
13192077--13192136	25	2.4	25	97	0	111	21	15	35	28	1.93
13195652--13195687	15	2.3	16	95	4	65	0	13	0	86	0.58
13195859--13195940	33	2.4	34	88	8	114	29	24	12	34	1.91
13195951--13196031	35	2.3	35	87	4	119	40	29	9	19	1.84
13212845--13212886	5	8.2	5	89	5	66	0	23	0	76	0.79
13212849--13212893	10	4.3	10	86	8	54	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13212845--13212893	15	3.1	15	88	5	71	0	26	0	73	0.83
13213151--13213230	35	2.3	35	84	4	108	41	30	6	22	1.78
13217682--13218541	172	5.0	170	80	4	935	34	13	12	39	1.83
13218428--13218680	140	1.8	140	86	5	370	32	14	11	41	1.81
13218648--13218959	151	2.1	150	87	0	435	33	13	15	37	1.87
13219500--13219573	36	2.0	37	84	2	96	36	25	10	27	1.89
13219501--13219582	36	2.4	34	78	8	87	35	25	10	28	1.90
13219998--13220053	20	2.9	20	86	7	80	33	12	14	39	1.83
13220221--13220263	22	2.0	22	85	0	59	46	13	4	34	1.65
13220294--13220380	21	4.0	21	81	12	97	49	13	4	32	1.63
13220507--13220567	21	2.9	21	70	4	52	42	14	13	29	1.84
13220658--13220853	97	2.0	96	88	4	288	34	13	15	36	1.87
13223173--13223228	25	2.2	24	84	12	69	14	30	14	41	1.85
13223251--13223275	10	2.5	10	100	0	50	0	8	0	92	0.40
13226662--13226733	35	2.1	35	97	0	135	37	31	6	23	1.82
13229527--13229564	20	1.9	19	94	5	67	28	5	21	44	1.73
13231820--13231854	7	4.7	7	86	13	52	37	17	0	45	1.48
13233861--13234061	64	3.2	63	87	0	276	27	31	12	28	1.93
13238068--13238186	35	3.4	35	90	0	175	27	11	33	26	1.91
13240275--13240444	43	4.0	43	85	1	198	25	17	34	23	1.96
13240272--13240487	86	2.6	83	79	9	208	25	15	34	25	1.95
13240755--13240800	22	2.1	22	84	4	58	28	23	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13247621--13247750	43	3.0	42	87	4	181	24	16	33	24	1.96
13258850--13258951	37	2.6	40	84	4	138	23	43	14	18	1.87
13259607--13259641	2	17.5	2	100	0	70	0	48	0	51	1.00
13260862--13260979	35	3.4	35	85	0	155	28	11	31	27	1.92
13264203--13264937	171	4.3	169	76	6	613	36	12	13	38	1.82
13265900--13265931	2	16.0	2	100	0	64	50	0	50	0	1.00
13265977--13266004	2	14.0	2	100	0	56	50	0	50	0	1.00
13268910--13268966	2	28.5	2	86	13	82	50	3	0	45	1.18
13268997--13269220	111	2.0	111	96	0	412	33	11	13	41	1.80
13283203--13283290	28	3.2	28	64	20	76	25	38	15	20	1.92
13283191--13283297	55	1.9	56	96	1	198	25	38	16	19	1.93
13283204--13283334	55	2.5	54	86	7	173	26	39	15	18	1.90
13286956--13287015	4	14.8	4	77	10	50	68	0	5	26	1.10
13286993--13287042	16	3.2	15	77	8	55	74	2	4	20	1.08
13286955--13287040	37	2.3	37	81	15	106	68	1	5	24	1.18
13288976--13289028	28	1.9	27	84	3	70	32	20	16	30	1.95
13289072--13289117	20	2.3	20	96	0	83	45	21	4	28	1.71
13289760--13289796	19	1.9	19	88	0	56	16	0	8	75	1.02
13291240--13291302	21	3.0	21	85	0	90	28	19	14	38	1.90
13292786--13292939	55	2.8	55	91	0	254	26	36	14	22	1.93
13296451--13296537	26	3.3	26	85	3	111	13	22	11	51	1.73
13296451--13296537	27	3.3	27	87	3	115	13	22	11	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13297771--13297817	19	2.4	19	73	16	51	48	4	0	46	1.21
13301263--13301305	21	2.0	22	90	4	70	41	20	6	30	1.79
13303573--13303597	13	1.9	13	100	0	50	44	0	8	48	1.32
13305318--13305349	15	2.1	15	94	0	55	31	9	6	53	1.58
13318515--13318567	18	2.8	18	80	11	54	56	15	0	28	1.39
13326055--13326098	22	2.0	22	95	0	79	38	27	9	25	1.86
13328362--13328407	21	2.2	20	84	7	56	15	21	6	56	1.61
13328367--13328407	21	1.9	22	90	5	66	17	24	7	51	1.70
13329693--13329734	19	2.2	19	91	0	66	38	9	11	40	1.75
13339832--13339987	59	2.7	58	84	4	197	39	9	12	39	1.75
13339832--13339974	28	5.0	28	83	6	169	39	10	12	37	1.78
13341219--13341298	36	2.2	35	77	14	90	43	3	3	48	1.38
13344800--13344836	2	18.5	2	88	0	56	43	0	2	54	1.14
13345266--13345294	12	2.4	12	100	0	58	51	0	0	48	1.00
13346858--13346895	19	2.0	19	89	0	58	28	2	28	39	1.70
13349569--13349609	11	3.7	11	96	0	64	29	0	21	48	1.50
13353814--13353867	28	2.0	27	88	3	81	31	18	22	27	1.97
13356528--13356569	20	2.1	20	90	0	66	30	4	21	42	1.73
13356615--13356672	28	2.1	27	81	12	73	32	17	22	27	1.96
13361534--13361568	14	2.5	14	85	0	52	74	0	20	5	1.02
13367182--13367324	28	4.8	29	83	12	166	39	7	11	41	1.71
13367185--13367324	60	2.4	58	87	6	192	39	7	11	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13374199--13374404	40	5.0	42	85	7	228	26	19	33	21	1.97
13376597--13376648	5	10.0	5	85	6	68	0	23	1	75	0.91
13376820--13376898	33	2.3	34	84	4	106	31	24	11	32	1.90
13377218--13377247	2	15.5	2	93	6	53	46	0	0	53	1.00
13379409--13379446	16	2.4	16	100	0	76	18	10	28	42	1.83
13380157--13380268	43	2.6	43	88	2	163	24	19	36	19	1.95
13380160--13380281	43	2.8	43	85	4	158	24	18	37	19	1.94
13381852--13382003	55	2.8	55	90	2	234	28	33	15	22	1.95
13382808--13382843	16	2.2	17	90	5	56	63	0	27	8	1.23
13394204--13394238	11	3.3	11	88	8	54	0	22	11	65	1.24
13401120--13401154	11	3.3	11	88	8	54	0	22	11	65	1.24
13405874--13405913	19	2.2	19	90	4	64	50	5	2	42	1.37
13406324--13406357	14	2.3	15	90	5	52	2	17	2	76	1.04
13410909--13410933	2	12.5	2	100	0	50	48	0	0	52	1.00
13411540--13411646	55	1.9	56	90	1	171	28	37	15	18	1.92
13412468--13412518	5	10.4	5	79	12	52	74	1	21	1	1.02
13412468--13412517	19	2.6	19	81	9	57	74	2	22	2	1.03
13417582--13417649	33	2.1	33	86	5	93	33	8	16	41	1.79
13421557--13421595	19	2.1	19	85	0	51	58	17	5	17	1.56
13431363--13431407	21	2.1	21	84	8	56	42	2	33	22	1.66
13435094--13435186	29	3.0	29	85	9	105	26	35	11	25	1.91
13440045--13440118	36	2.1	36	97	0	139	60	29	2	6	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13440372--13440417	23	2.0	23	95	0	83	36	10	13	39	1.79
13444329--13444743	208	2.0	207	96	2	755	26	16	24	31	1.96
13445135--13445180	23	2.0	23	95	0	83	36	10	13	39	1.79
13446241--13446274	17	1.9	18	88	5	52	47	41	0	11	1.40
13447393--13447423	9	3.4	9	95	0	53	54	19	0	25	1.44
13454465--13454521	21	2.7	21	84	10	80	35	10	14	40	1.80
13456098--13456271	29	6.1	29	71	9	151	28	6	24	40	1.81
13456153--13456246	28	3.3	27	67	14	73	26	8	24	40	1.84
13456120--13456276	57	2.8	57	91	0	251	26	7	24	40	1.82
13457707--13457753	4	12.0	4	90	4	69	46	25	4	23	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91