genome.fa.s3.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  15  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4781889--4782044	71	2.2	72	86	3	217	25	19	15	39	1.91
4781889--4782075	71	2.6	69	81	8	214	25	19	16	39	1.91
4791312--4791368	25	2.3	25	82	14	73	15	28	12	43	1.83
4791326--4791375	25	2.0	25	92	0	82	16	28	12	44	1.83
4791366--4791410	15	3.0	15	80	0	54	4	13	2	80	0.97
4791577--4791647	35	2.1	34	86	7	99	35	26	9	28	1.88
4791848--4791882	16	2.2	16	89	0	52	0	11	8	80	0.92
4791955--4791980	12	2.2	12	100	0	52	0	26	7	65	1.20
4791996--4792038	2	21.5	2	100	0	86	48	0	0	51	1.00
4793198--4793375	60	3.0	60	83	3	218	26	15	33	24	1.95
4797566--4797629	28	2.2	29	83	5	76	34	25	14	26	1.94
4798328--4798369	21	1.9	23	85	9	61	26	16	11	45	1.82
4798471--4798507	19	1.9	19	89	10	58	35	18	16	29	1.93
4800935--4800994	30	2.1	29	81	6	68	31	8	21	38	1.83
4804982--4805037	22	2.6	21	75	13	51	51	0	1	46	1.11
4818444--4818482	20	2.0	20	89	0	60	38	20	2	38	1.66
4823185--4823222	19	2.0	19	100	0	76	26	0	31	42	1.56
4824464--4824488	13	1.9	13	100	0	50	44	0	8	48	1.32
4828295--4828332	19	2.0	19	100	0	76	26	0	31	42	1.56
4843318--4843744	194	2.2	191	88	4	617	31	21	15	31	1.94
4847943--4848020	41	1.9	41	97	0	147	33	7	15	43	1.75
4850987--4851028	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851029--4851071	2	21.5	2	95	0	77	0	0	46	53	1.00
4853975--4854007	2	16.5	2	100	0	66	0	0	48	51	1.00
4854448--4854673	42	5.4	42	92	0	371	19	22	34	23	1.97
4854693--4854754	26	2.4	26	91	0	97	22	3	41	32	1.70
4856644--4856789	37	3.9	37	89	3	231	25	36	9	28	1.87
4857778--4857825	24	2.0	24	95	0	87	25	10	20	43	1.83
4861881--4861920	20	2.0	20	90	0	62	40	10	35	15	1.80
4863007--4863102	36	2.6	36	78	1	102	36	13	21	28	1.92
4865457--4865488	2	16.0	2	100	0	64	50	0	0	50	1.00
4866840--4866934	30	3.1	31	88	7	142	55	8	7	28	1.56
4869036--4869161	42	3.0	42	82	0	162	22	24	32	20	1.98
4869202--4869251	2	25.0	2	83	0	64	48	6	2	44	1.39
4875537--4875570	17	2.1	17	94	5	61	55	0	8	35	1.31
4875733--4875775	18	2.4	18	84	7	52	74	4	20	0	1.00
4878469--4878501	2	16.5	2	100	0	66	0	0	48	51	1.00
4878600--4878860	69	3.8	69	82	3	296	32	14	22	30	1.93
4878881--4878910	2	15.0	2	100	0	60	50	0	0	50	1.00
4878909--4878943	3	11.3	3	87	6	52	34	2	28	34	1.72
4883759--4884147	42	9.3	42	91	0	616	20	21	34	23	1.96
4890254--4890418	42	3.9	41	84	4	177	25	17	34	22	1.96
4890255--4890418	84	1.9	85	81	1	195	25	17	34	22	1.96
4908820--4908852	2	17.0	2	93	6	59	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4908963--4909068	38	2.7	38	88	2	149	23	13	38	24	1.90
4915865--4915894	15	1.9	16	93	6	53	80	0	16	3	0.85
4929711--4929903	93	2.1	93	98	1	368	33	22	3	39	1.72
4931354--4931502	35	4.5	32	73	15	122	40	26	9	24	1.85
4931327--4931517	67	2.8	68	84	6	237	38	25	9	26	1.87
4934687--4935273	294	2.0	293	96	0	1075	41	15	11	32	1.82
4937222--4937278	14	3.7	14	74	19	51	43	17	1	36	1.60
4939743--4939888	35	4.4	33	74	18	124	38	27	11	22	1.89
4939716--4939891	67	2.6	67	85	5	223	37	26	11	24	1.90
4940345--4940377	13	2.5	13	95	0	57	24	21	21	33	1.97
4943797--4943832	11	3.4	11	88	7	56	0	22	11	66	1.22
4945110--4945134	9	2.8	9	100	0	50	36	20	0	44	1.52
4957076--4957116	2	20.5	2	100	0	82	48	0	0	51	1.00
4957175--4957211	2	20.0	2	84	15	53	45	0	0	54	1.00
4957175--4957211	9	4.0	9	93	6	65	45	0	0	54	1.00
4958414--4958539	35	3.6	35	89	2	173	22	14	22	41	1.89
4959308--4959364	30	2.0	30	83	13	75	33	3	7	56	1.43
4962453--4962483	11	2.8	11	100	0	62	29	6	19	45	1.75
4963148--4963204	28	2.0	28	93	0	96	50	10	10	28	1.69
4966073--4966108	2	18.0	2	100	0	72	50	0	0	50	1.00
4983555--4983666	44	2.6	44	80	4	120	25	24	16	34	1.95
4985190--4985302	44	2.6	44	80	4	122	24	25	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4985647--4985688	22	1.9	22	90	0	66	28	16	23	30	1.96
4999912--4999936	13	1.9	13	100	0	50	48	20	16	16	1.82
5002879--5002909	14	2.1	15	94	5	55	54	0	0	45	0.99
5010451--5010475	2	12.5	2	100	0	50	0	52	0	48	1.00
5011475--5011521	23	2.0	23	100	0	94	48	0	0	51	1.00
5011479--5011527	23	2.2	23	88	3	73	55	0	0	44	0.99
5012423--5012447	2	12.5	2	100	0	50	48	0	52	0	1.00
5012618--5012668	2	27.0	2	82	11	63	43	0	1	54	1.11
5017837--5017862	9	2.9	9	100	0	52	19	34	34	11	1.88
5020888--5020913	2	13.0	2	100	0	52	50	50	0	0	1.00
5020927--5020973	20	2.3	20	96	0	85	27	4	23	44	1.72
5022198--5022398	100	2.0	100	96	0	366	24	12	16	45	1.83
5031981--5032017	3	12.3	3	94	0	65	70	0	0	29	0.88
5036880--5037039	53	2.9	53	81	4	167	26	12	16	43	1.84
5038879--5038916	19	2.0	19	94	0	67	28	0	28	42	1.56
5047955--5048024	36	1.9	36	97	0	131	34	14	15	35	1.88
5050387--5050411	13	1.9	13	100	0	50	48	8	0	44	1.32
5052546--5052715	35	5.1	34	74	13	140	23	14	26	35	1.94
5052549--5052722	66	2.6	68	89	5	259	24	14	27	33	1.94
5053201--5053314	30	3.8	30	88	2	149	42	11	14	31	1.82
5053196--5053322	30	4.2	30	85	3	148	42	11	16	29	1.83
5054210--5054329	60	2.0	60	84	12	158	36	5	20	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5055533--5055572	19	2.1	19	95	0	71	35	20	27	17	1.95
5058686--5058750	22	3.0	22	74	0	67	27	20	26	26	1.99
5058955--5059053	40	2.5	40	91	1	155	35	23	18	23	1.96
5059456--5059558	38	2.6	39	86	6	138	22	40	16	20	1.91
5066876--5067025	60	2.5	60	85	5	205	34	20	16	28	1.94
5072674--5072711	19	2.0	19	94	0	67	23	2	31	42	1.68
5072858--5072888	16	1.9	16	93	0	53	35	0	41	22	1.54
5075179--5075281	38	2.6	39	85	8	131	22	39	16	21	1.92
5078116--5078150	14	2.6	14	86	4	54	77	5	11	5	1.12
5078134--5078168	18	1.9	18	94	0	61	77	5	11	5	1.12
5085026--5085065	19	2.0	20	90	4	64	42	25	2	30	1.68
5085568--5085592	13	1.9	13	100	0	50	44	0	8	48	1.32
5093423--5093467	16	2.8	16	96	0	81	17	6	17	57	1.60
5093423--5093473	16	3.2	15	86	10	66	19	5	15	58	1.57
5094977--5095133	64	2.5	64	81	2	172	31	19	20	28	1.97
5117369--5117403	3	11.7	3	93	0	61	34	0	2	62	1.10
5120263--5121079	407	2.0	406	94	0	1427	32	20	12	34	1.90
5122894--5123075	60	3.0	60	84	1	204	23	31	18	26	1.97
5123785--5123815	6	5.0	6	92	7	53	0	19	0	80	0.71
5123779--5123815	12	2.9	13	88	8	58	0	21	0	78	0.75
5123821--5123952	62	2.1	63	87	5	187	4	37	6	51	1.47
5127120--5127174	8	6.9	8	87	0	74	47	3	0	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5127120--5127174	10	5.5	10	88	0	74	47	3	0	49	1.19
5127120--5127174	6	9.2	6	85	0	74	47	3	0	49	1.19
5128587--5128643	30	1.9	30	85	0	78	31	10	12	45	1.76
5128585--5128651	30	2.2	29	76	7	71	29	14	10	44	1.79
5136454--5136704	44	5.5	42	72	15	139	40	4	11	44	1.60
5136560--5136709	44	3.4	45	75	5	144	40	4	13	42	1.63
5136451--5136707	90	2.8	90	80	10	281	40	4	11	43	1.62
5142959--5143000	14	2.8	15	75	13	50	69	21	0	9	1.17
5146184--5146229	20	2.3	20	88	0	65	30	2	23	43	1.66
5146193--5146230	20	1.9	20	94	0	67	31	0	28	39	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91