genome.fa.s3.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  33  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11502814--11502869	19	2.9	19	76	21	62	0	26	0	73	0.84
11502813--11502890	20	3.9	19	90	8	104	0	29	0	70	0.87
11502818--11502890	13	5.4	15	71	24	56	0	30	0	69	0.88
11504163--11504204	19	2.2	19	86	0	57	61	0	0	38	0.96
11507934--11507968	17	2.1	17	100	0	70	34	8	17	40	1.80
11520854--11520916	33	1.9	33	83	6	83	61	1	33	3	1.21
11522474--11522533	30	2.1	29	81	6	68	31	8	21	38	1.83
11529233--11529271	20	1.9	19	85	10	51	48	28	2	20	1.62
11533095--11533133	14	2.7	15	88	4	53	2	20	2	74	1.06
11533089--11533135	5	9.4	5	79	6	51	4	19	2	74	1.09
11533109--11533152	15	2.9	15	86	3	52	4	27	0	68	1.09
11533892--11534080	34	5.3	34	65	16	103	22	15	34	26	1.95
11533879--11534119	73	3.3	73	82	2	304	21	14	35	28	1.93
11541378--11541471	39	2.4	39	89	0	134	21	13	40	24	1.89
11543884--11543912	9	3.3	9	90	9	51	82	6	0	10	0.83
11545849--11546022	28	6.0	28	77	13	145	36	12	9	41	1.75
11545860--11546009	31	5.0	30	77	13	148	38	12	8	40	1.73
11545852--11546009	59	2.7	59	86	3	210	39	12	8	39	1.74
11545852--11546022	29	5.9	28	77	8	153	36	12	9	41	1.75
11547632--11547669	19	2.0	19	100	0	76	26	0	31	42	1.56
11549320--11549370	22	2.3	21	80	12	50	52	0	0	47	1.00
11551068--11551160	34	2.7	34	85	5	116	20	25	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11557564--11557797	118	2.0	118	99	0	459	40	22	11	25	1.88
11566187--11566468	143	2.0	143	85	4	381	37	19	11	31	1.87
11575524--11575554	16	1.9	16	93	0	53	61	29	9	0	1.28
11577919--11578139	29	7.4	28	79	10	208	40	7	11	39	1.70
11577919--11578077	57	2.8	57	84	7	196	38	6	13	42	1.69
11585196--11585233	19	2.0	20	89	5	60	23	39	5	31	1.77
11585324--11585398	20	3.7	20	87	3	105	66	0	33	0	0.92
11586586--11586840	38	6.9	38	86	5	355	29	10	31	28	1.90
11586587--11586840	75	3.4	76	87	4	353	29	10	31	28	1.90
11586869--11586922	2	27.0	2	100	0	108	50	0	0	50	1.00
11595234--11595302	21	3.2	21	63	25	54	27	33	15	23	1.95
11595217--11595339	43	2.9	43	96	1	221	24	34	17	23	1.96
11601179--11601216	19	2.0	19	94	0	67	28	0	28	42	1.56
11604607--11604667	27	2.3	27	85	0	86	44	26	13	16	1.84
11610335--11610362	10	2.8	10	100	0	56	50	39	0	10	1.37
11612947--11612979	17	1.9	17	88	11	50	42	15	3	39	1.62
11613131--11613295	59	2.8	58	85	4	215	43	11	9	36	1.73
11613121--11613293	29	5.9	28	80	8	166	41	12	9	37	1.74
11616637--11616686	21	2.5	19	77	9	55	22	26	6	46	1.74
11621211--11621332	60	2.0	60	87	6	176	23	33	18	23	1.97
11632851--11632881	2	15.5	2	100	0	62	48	0	0	51	1.00
11635924--11636118	28	6.8	28	83	8	221	40	9	13	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11635917--11636118	57	3.5	57	85	6	262	40	9	13	36	1.78
11637576--11637610	17	2.1	17	89	10	54	37	0	2	60	1.12
11643612--11643641	3	10.0	3	92	0	51	0	30	0	70	0.88
11646928--11647043	43	2.7	44	78	15	125	25	36	13	24	1.92
11646968--11647060	43	2.2	43	90	0	141	22	35	16	25	1.94
11647838--11647879	20	2.1	20	90	0	66	50	9	26	14	1.73
11657063--11657311	28	8.6	28	78	7	248	37	10	13	39	1.78
11657069--11657311	57	4.2	57	78	8	251	37	9	13	39	1.77
11659450--11659792	189	1.8	189	82	2	447	34	13	27	23	1.93
11659896--11659930	17	2.1	17	94	0	61	54	14	17	14	1.72
11667321--11667355	19	1.9	18	88	11	54	34	8	11	45	1.71
11669423--11669699	35	7.9	35	81	3	263	42	13	7	36	1.72
11669421--11669692	71	3.9	70	80	3	289	42	13	7	36	1.72
11669430--11669699	142	1.9	138	90	3	423	42	12	7	37	1.70
11675204--11675261	21	2.7	22	81	5	82	20	6	22	50	1.72
11675302--11675400	23	4.2	24	80	8	107	34	26	15	24	1.94
11678296--11678494	26	8.2	26	72	15	169	36	25	14	24	1.92
11678381--11678443	21	3.0	20	73	17	56	31	28	15	23	1.96
11678316--11678534	95	2.3	95	83	3	282	37	24	13	24	1.92
11678295--11678466	72	2.4	70	88	4	258	36	25	14	23	1.93
11678632--11678745	60	1.9	61	80	8	135	38	19	7	34	1.81
11680384--11680431	12	4.0	12	88	0	51	8	45	22	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11680386--11680425	18	2.2	18	86	0	53	7	47	22	22	1.76
11680398--11680435	18	2.1	18	90	9	60	13	42	15	28	1.85
11683740--11683776	2	19.5	2	89	10	60	0	45	0	54	1.00
11683794--11683831	4	9.5	4	100	0	76	26	0	23	50	1.50
11686504--11686580	40	1.9	41	84	7	104	25	14	19	40	1.89
11687584--11687669	33	2.6	33	83	1	109	66	0	4	29	1.12
11690579--11690614	19	1.9	19	88	5	56	11	0	27	61	1.30
11691560--11691610	25	2.0	25	84	3	66	23	7	3	64	1.37
11694781--11694910	64	2.0	64	93	0	224	41	26	7	24	1.82
11697726--11697785	27	2.2	27	78	0	66	65	3	13	18	1.40
11699891--11700021	35	3.8	35	74	6	124	31	25	13	29	1.94
11699898--11700033	67	2.0	67	89	0	209	36	25	13	25	1.92
11700113--11700537	213	2.0	213	98	0	823	35	13	20	31	1.91
11700651--11700833	73	2.5	73	79	4	199	22	22	15	39	1.91
11700611--11700822	74	2.9	73	78	6	230	23	21	15	39	1.91
11703176--11703284	42	2.6	42	86	2	148	24	31	21	22	1.98
11724693--11724727	11	3.3	11	88	8	54	65	11	22	0	1.24
11732618--11732732	43	2.7	43	87	0	176	23	18	36	21	1.95
11732741--11732799	23	2.6	23	97	0	109	23	3	42	30	1.71
11740074--11740119	20	2.3	20	92	0	74	28	41	23	6	1.79
11753059--11753267	55	3.8	55	88	0	301	26	33	16	24	1.96
11754112--11754173	26	2.4	26	94	0	106	32	40	3	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11754408--11754530	42	2.9	42	95	0	219	21	33	22	21	1.97
11763649--11763687	19	2.1	19	90	9	62	35	12	0	51	1.40
11769815--11769869	27	2.0	28	85	3	76	72	3	9	14	1.23
11771019--11771085	31	2.2	31	89	5	100	26	16	31	25	1.96
11771173--11771256	31	2.7	31	84	12	95	48	5	20	25	1.71
11773013--11773050	19	2.0	19	89	0	58	28	0	26	44	1.54
11773399--11773426	9	3.1	9	100	0	56	78	0	0	21	0.75
11774420--11774444	13	1.9	13	100	0	50	44	0	8	48	1.32
11775846--11775887	15	2.8	15	86	10	59	21	2	19	57	1.52
11775846--11775884	16	2.6	16	88	8	55	15	2	20	61	1.45
11779317--11779341	13	1.9	13	100	0	50	44	0	8	48	1.32
11782191--11782236	23	2.0	23	83	8	58	39	10	10	39	1.76
11785566--11785590	13	1.9	13	100	0	50	48	8	0	44	1.32
11788513--11788566	27	2.0	28	85	10	76	70	0	3	25	1.04
11792106--11792248	60	2.4	60	86	0	205	32	20	20	25	1.97
11792106--11792272	60	2.8	60	81	7	162	32	19	21	26	1.97
11792205--11792405	90	2.2	90	95	1	359	30	22	22	24	1.99
11792730--11792848	43	2.8	43	89	2	168	19	37	21	21	1.94
11795169--11796428	171	7.3	170	74	8	948	37	14	14	33	1.86
11796312--11796555	128	1.9	129	85	4	341	36	15	13	34	1.87
11797246--11797292	24	2.0	24	100	0	94	46	14	4	34	1.64
11796475--11798602	171	12.5	168	73	8	1186	38	14	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11799788--11799825	19	2.0	19	85	10	51	26	2	26	44	1.67
11799902--11800000	19	5.1	19	65	13	67	20	18	41	20	1.91
11799898--11800000	38	2.6	40	89	3	156	19	17	41	21	1.90
11801959--11802333	170	2.2	173	80	5	424	38	13	12	35	1.83
11802220--11802470	139	1.8	139	83	6	339	35	15	14	34	1.88
11802051--11802632	309	1.9	309	82	5	746	37	14	13	33	1.86
11802359--11805908	170	20.9	169	77	5	3062	37	15	13	33	1.86
11802359--11807529	341	15.3	340	77	6	4231	37	14	13	33	1.86
11805931--11807529	339	4.7	334	77	7	1170	37	13	14	34	1.85
11805931--11807534	171	9.5	171	78	5	1410	37	13	14	34	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91