genome.fa.s3.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  74  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26906962--26907010	14	3.4	14	78	13	55	30	0	0	69	0.89
26906963--26907018	29	2.0	28	85	3	76	32	0	1	66	1.03
26916992--26917074	2	41.5	2	97	0	157	49	0	0	49	1.01
26918723--26918879	52	3.0	52	86	0	224	23	14	31	31	1.94
26918854--26918968	36	3.2	35	81	8	126	26	15	31	26	1.96
26919133--26919275	73	2.0	73	83	4	182	20	22	27	28	1.99
26946802--26946938	2	68.0	2	76	4	105	44	9	1	43	1.45
26946782--26946922	71	2.0	70	100	0	273	39	12	2	43	1.58
26949983--26950042	27	2.2	27	96	0	111	35	10	10	45	1.71
26955874--26955916	20	2.1	20	83	12	52	51	0	0	48	1.00
26955881--26955941	26	2.4	24	79	15	68	45	1	0	52	1.10
26957966--26957990	2	12.5	2	100	0	50	52	0	0	48	1.00
26971494--26971532	2	19.5	2	89	0	60	46	0	2	51	1.14
26986168--26986774	181	3.4	181	85	0	759	39	20	10	29	1.85
26987712--26987818	53	2.0	53	87	0	151	26	19	10	43	1.83
26988208--26988265	29	2.1	27	84	12	89	55	6	3	34	1.44
26991041--26991067	2	13.5	2	100	0	54	48	0	0	51	1.00
26997120--26997145	3	8.7	3	100	0	52	65	0	34	0	0.93
26998117--26998141	4	6.2	4	100	0	50	76	0	24	0	0.80
27005940--27005973	18	1.9	18	94	5	61	35	0	0	64	0.94
27010506--27010540	2	17.5	2	100	0	70	48	0	0	51	1.00
27016941--27016980	2	20.0	2	94	0	71	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27017018--27017131	38	3.0	38	86	0	147	27	32	10	29	1.90
27019885--27020188	143	2.1	143	89	4	452	36	4	5	53	1.44
27019961--27020156	48	4.2	45	68	19	112	37	3	6	53	1.43
27019982--27020195	48	4.5	45	69	21	141	35	4	4	54	1.42
27027537--27027565	2	15.0	2	92	7	51	48	51	0	0	1.00
27028165--27028249	20	4.3	20	76	8	75	37	20	21	21	1.94
27029206--27029397	96	2.0	96	91	0	312	33	16	15	34	1.90
27037500--27037547	24	2.0	25	87	4	71	54	2	0	43	1.12
27038167--27038204	20	1.9	20	84	10	51	21	13	10	55	1.67
27055221--27055271	26	2.0	26	92	0	84	13	9	21	54	1.67
27076005--27076036	2	16.0	2	100	0	64	50	0	0	50	1.00
27092426--27092488	28	2.4	25	82	15	74	52	1	1	44	1.20
27092456--27092499	22	2.0	23	90	4	72	54	2	0	43	1.12
27099865--27099900	18	2.0	18	100	0	72	50	11	11	27	1.72
27105292--27105323	2	16.0	2	100	0	64	50	0	50	0	1.00
27121906--27121938	2	16.5	2	100	0	66	51	0	48	0	1.00
27123674--27123708	18	1.9	18	88	0	52	57	17	8	17	1.64
27138320--27138763	171	2.6	173	79	7	419	27	22	18	31	1.97
27145740--27145807	27	2.6	27	76	2	66	26	13	16	44	1.84
27146151--27146195	2	23.0	2	95	4	83	51	0	0	48	1.00
27151228--27151265	15	2.5	15	87	8	51	21	5	26	47	1.71
27157792--27157872	25	3.4	23	75	16	76	62	2	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27159082--27159117	2	17.5	2	88	5	54	50	2	0	47	1.15
27159073--27159116	23	1.9	23	86	9	63	47	4	4	43	1.44
27179696--27179734	17	2.3	17	86	0	51	79	0	0	20	0.73
27181982--27182038	24	2.4	24	87	0	78	29	15	22	31	1.95
27196929--27196958	2	15.5	2	93	6	53	46	0	0	53	1.00
27199338--27199426	2	45.0	2	88	6	137	49	1	0	48	1.08
27201513--27201542	16	1.9	15	93	6	51	40	0	0	60	0.97
27201960--27202005	15	3.1	15	90	0	74	52	2	8	36	1.45
27202203--27202269	27	2.4	27	80	7	73	26	2	1	68	1.12
27202296--27202377	15	5.6	14	69	15	51	28	3	0	68	1.06
27202295--27202361	31	2.1	33	89	10	104	29	4	0	65	1.12
27213144--27213168	13	1.9	13	100	0	50	0	12	0	88	0.53
27216796--27216849	11	4.9	11	73	22	51	42	0	1	55	1.10
27217128--27217177	25	2.0	25	100	0	100	48	0	12	40	1.40
27224757--27224800	23	1.9	23	95	0	79	38	13	11	36	1.81
27228098--27228165	29	2.5	26	76	19	68	55	2	0	41	1.15
27228286--27228335	20	2.5	20	80	9	57	38	0	10	52	1.35
27233493--27233522	2	15.0	2	92	0	51	0	46	0	53	1.00
27237430--27237467	5	7.6	5	100	0	76	0	18	0	81	0.69
27242984--27243012	2	14.5	2	100	0	58	0	51	0	48	1.00
27245894--27246013	26	4.5	26	74	13	100	63	0	3	32	1.17
27245893--27245955	19	3.3	20	79	18	64	61	0	1	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27245905--27246031	26	4.7	27	72	10	73	65	0	3	30	1.14
27246279--27246327	15	3.3	15	77	2	55	36	14	6	42	1.70
27265789--27265820	2	16.5	2	93	6	57	50	0	0	50	1.00
27265767--27265877	56	2.0	55	96	3	197	59	0	9	30	1.28
27265845--27265876	2	16.5	2	93	6	57	50	0	0	50	1.00
27275377--27275415	19	2.0	19	90	5	60	2	7	2	87	0.73
27276796--27276830	14	2.5	14	90	0	61	14	5	8	71	1.29
27292157--27292199	2	22.0	2	95	4	79	48	0	0	51	1.00
27292275--27292300	2	13.0	2	100	0	52	0	50	0	50	1.00
27292300--27292339	2	20.0	2	100	0	80	50	0	0	50	1.00
27294863--27294956	45	2.1	45	83	0	116	44	5	5	44	1.49
27294949--27294986	18	2.0	20	90	10	62	47	0	2	50	1.15
27295370--27295400	13	2.4	13	100	0	62	29	12	6	51	1.65
27300544--27300656	58	1.9	58	98	0	217	21	29	8	40	1.83
27316645--27316684	5	7.8	5	83	5	53	77	0	22	0	0.77
27317069--27317093	7	3.6	7	100	0	50	36	0	0	64	0.94
27339921--27339950	14	2.1	14	93	0	51	33	10	23	33	1.88
27351493--27351517	7	3.6	7	100	0	50	44	12	44	0	1.41
27353499--27353537	20	2.0	20	85	5	53	51	0	7	41	1.31
27353697--27353763	26	2.7	26	75	13	79	47	1	0	50	1.10
27358259--27358316	26	2.2	26	87	0	80	56	6	6	29	1.51
27360104--27360314	51	4.1	51	78	4	210	38	14	19	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27360097--27360314	102	2.1	102	81	1	258	38	14	20	27	1.91
27362323--27362361	2	19.5	2	94	0	69	51	2	0	46	1.14
27363004--27363032	2	14.5	2	100	0	58	51	48	0	0	1.00
27372060--27372110	17	3.0	17	83	16	70	0	19	0	80	0.71
27372055--27372113	22	2.6	24	84	10	72	0	20	1	77	0.85
27372060--27372112	26	2.0	26	89	7	81	0	20	0	79	0.74
27372327--27372367	11	3.6	12	87	9	50	82	4	12	0	0.81
27372323--27372367	22	2.1	21	91	4	72	82	4	13	0	0.82
27372888--27372927	21	1.9	21	84	0	53	55	0	0	45	0.99
27387038--27387063	2	13.0	2	100	0	52	50	0	0	50	1.00
27398751--27398811	27	2.2	28	88	5	90	40	0	4	54	1.22
27406888--27406943	18	2.9	18	75	14	58	55	3	0	41	1.17
27406894--27406945	21	2.5	22	71	9	54	50	3	0	46	1.20
27410486--27410520	18	1.9	18	88	0	52	68	0	0	31	0.90
27419815--27419860	22	2.1	22	100	0	92	30	28	23	17	1.97
27422596--27422718	38	3.3	38	77	4	135	42	7	3	47	1.47
27431698--27432143	142	3.0	142	87	7	531	39	12	10	38	1.77
27439713--27439744	15	2.1	15	94	0	55	12	18	9	59	1.59
27443618--27443684	22	3.1	22	79	10	59	32	0	0	67	0.91
27443634--27443686	21	2.6	21	82	11	65	35	0	0	64	0.94
27443986--27444098	55	2.1	55	88	3	165	35	11	41	11	1.77
27444071--27444132	23	2.6	25	80	15	76	48	11	40	0	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27444591--27444652	23	2.8	22	77	15	65	69	1	4	24	1.17
27444947--27444972	13	2.0	13	100	0	52	61	0	7	30	1.24
27456823--27456859	3	12.3	3	100	0	74	32	0	0	67	0.91
27465086--27465123	2	19.5	2	94	5	69	50	0	50	0	1.00
27466589--27466641	21	2.6	20	75	21	56	50	1	1	45	1.23
27473027--27473093	30	2.2	30	86	7	91	52	4	7	35	1.50
27473069--27473132	26	2.4	26	82	12	69	59	4	4	31	1.38
27473441--27473479	17	2.3	17	86	0	51	51	0	0	48	1.00
27473413--27473469	8	7.1	8	75	15	55	50	0	0	49	1.00
27477200--27477669	236	2.0	234	81	6	554	32	6	14	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91