genome.fa.s3.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  51  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17866747--17866857	39	2.9	39	81	4	129	29	33	11	25	1.91
17866781--17866875	39	2.4	39	84	3	111	27	33	12	26	1.92
17867387--17867429	20	2.2	20	82	0	50	37	0	41	20	1.53
17868867--17868893	10	2.7	10	100	0	54	7	0	0	92	0.38
17870525--17870606	37	2.2	37	100	0	164	25	37	9	26	1.87
17870708--17870758	2	25.5	2	100	0	102	49	0	0	50	1.00
17871392--17871431	20	2.0	20	90	0	62	37	7	37	17	1.78
17882695--17882790	38	2.5	38	83	6	122	22	15	36	25	1.94
17882755--17882913	56	2.9	55	85	7	198	23	17	37	21	1.94
17884458--17884497	20	2.0	20	90	0	62	17	37	7	37	1.78
17885305--17885346	20	2.2	19	84	16	52	30	2	26	40	1.69
17885341--17885459	37	3.2	37	86	4	177	28	8	36	26	1.86
17894735--17894839	35	3.0	35	91	0	156	29	31	10	28	1.90
17908804--17908852	20	2.4	21	79	3	55	77	2	18	2	0.96
17908799--17908842	19	2.5	17	78	10	52	79	2	18	0	0.83
17910355--17910393	20	1.9	21	89	5	62	0	28	0	71	0.86
17913690--17913727	19	2.0	19	94	0	67	34	0	23	42	1.55
17913893--17913952	30	2.1	30	81	6	70	31	5	21	41	1.75
17916522--17916562	15	2.7	15	80	0	55	24	4	19	51	1.66
17927131--17927250	35	3.3	35	75	11	107	30	24	12	33	1.92
17932765--17932808	20	2.2	20	84	8	54	43	2	13	40	1.57
17934055--17934184	29	4.4	29	77	7	129	40	12	9	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17934055--17934184	58	2.2	60	82	8	160	40	12	9	38	1.75
17935881--17936027	35	4.4	33	77	13	149	35	28	12	23	1.92
17935854--17936026	67	2.6	66	91	7	278	34	27	13	24	1.93
17935862--17936027	35	4.9	34	73	14	148	34	27	13	24	1.93
17936418--17936611	73	2.6	74	80	8	220	18	19	19	43	1.89
17939991--17940070	35	2.3	35	86	2	115	45	16	5	33	1.69
17941953--17942055	38	2.6	39	84	6	138	23	41	15	19	1.89
17947138--17947178	21	1.9	22	85	5	57	31	2	7	58	1.38
17949400--17949525	37	3.2	40	71	23	113	22	13	38	25	1.90
17949416--17949549	36	3.5	37	73	17	137	20	13	41	25	1.88
17949399--17949555	81	2.0	80	93	3	271	21	14	38	25	1.91
17956448--17956489	20	2.1	20	95	0	75	30	11	45	11	1.77
17956940--17956977	19	2.0	19	100	0	76	26	15	26	31	1.96
17959365--17959542	73	2.4	74	78	3	191	23	24	20	32	1.98
17959551--17959622	37	1.9	37	88	0	108	26	25	16	31	1.96
17977088--17977129	21	2.1	20	86	8	59	54	9	2	33	1.46
17982060--17982196	72	1.9	72	89	3	213	40	16	15	27	1.89
17984097--17984138	21	2.1	19	91	8	66	26	0	9	64	1.24
18007962--18008008	21	2.3	21	88	3	69	44	17	4	34	1.68
18009823--18009869	19	2.5	19	96	0	85	57	8	0	34	1.29
18012763--18012988	43	5.3	42	72	13	138	35	16	17	29	1.93
18017108--18017146	19	2.1	19	95	0	69	20	23	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18017938--18018062	43	2.9	43	81	2	153	24	17	37	20	1.94
18018363--18018408	21	2.2	21	88	0	65	32	21	19	26	1.97
18029529--18029567	13	2.9	13	96	3	69	30	7	20	41	1.80
18037508--18038328	411	2.0	410	93	0	1399	29	14	27	28	1.95
18038555--18038614	30	2.0	30	96	0	111	33	18	16	31	1.93
18046804--18046846	19	2.3	18	80	4	50	53	2	2	41	1.26
18047760--18047845	34	2.5	34	86	7	111	27	8	33	30	1.86
18047781--18047884	34	3.1	33	77	10	95	26	9	32	30	1.89
18048044--18048107	27	2.4	28	76	7	69	65	0	3	31	1.08
18048160--18048460	154	2.0	154	97	0	559	33	10	23	31	1.90
18060034--18060162	34	3.7	35	76	11	120	26	6	37	28	1.82
18060325--18060372	5	9.2	5	80	17	53	77	0	2	20	0.88
18067732--18067770	21	1.9	20	85	15	53	2	30	2	64	1.21
18077803--18077846	23	1.9	23	85	0	61	34	2	11	52	1.50
18079765--18079789	13	1.9	13	100	0	50	48	8	0	44	1.32
18084877--18084936	30	2.1	28	84	6	75	31	3	21	43	1.69
18086075--18086109	16	2.2	16	89	0	52	40	2	8	48	1.49
18088784--18088808	13	1.9	13	100	0	50	44	0	8	48	1.32
18090391--18090446	26	2.2	26	100	0	112	30	26	12	30	1.93
18090252--18090649	200	2.0	199	99	0	778	33	24	11	30	1.91
18090591--18090646	26	2.2	26	100	0	112	30	26	12	30	1.93
18091569--18091606	19	2.0	19	94	0	67	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18092492--18092814	172	1.9	172	89	3	508	13	40	9	35	1.78
18092946--18092993	10	4.8	10	79	7	53	25	2	2	70	1.09
18092946--18093037	29	3.1	30	76	18	95	26	1	3	69	1.10
18092990--18093045	21	2.6	23	81	18	75	28	0	3	67	1.07
18093633--18093698	33	2.0	33	88	5	98	25	19	13	40	1.89
18094072--18095220	580	2.0	575	91	2	1874	35	11	16	36	1.84
18095269--18095302	15	2.4	14	85	9	50	29	17	8	44	1.79
18097251--18097294	19	2.3	19	88	11	63	75	0	0	25	0.81
18097487--18097551	13	4.9	13	75	17	53	72	3	6	18	1.19
18097836--18097874	11	3.6	11	82	3	53	71	0	0	28	0.86
18097965--18098047	20	4.4	19	71	17	66	71	1	4	22	1.12
18101578--18101625	17	2.9	17	78	3	53	56	14	8	20	1.64
18103281--18103323	21	2.0	22	81	9	52	13	11	2	72	1.22
18107800--18107844	2	22.5	2	100	0	90	51	0	0	48	1.00
18107898--18108017	42	2.8	42	80	6	127	25	15	35	23	1.94
18108392--18108432	21	2.0	21	95	0	73	34	21	26	17	1.95
18110128--18110269	35	4.1	35	87	3	207	25	10	38	26	1.88
18110128--18110255	68	1.9	68	93	0	220	24	10	39	26	1.87
18119391--18119421	16	1.9	16	93	0	53	48	0	25	25	1.52
18120152--18120253	35	2.9	35	92	0	168	22	10	39	27	1.87
18126636--18126777	49	2.9	49	88	5	200	23	33	14	28	1.94
18134434--18134459	10	2.6	10	100	0	52	38	42	19	0	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18135719--18135837	43	2.8	43	85	2	150	20	36	20	23	1.95
18171430--18171478	19	2.5	19	86	3	62	2	24	2	71	1.07
18172977--18173039	9	7.8	8	80	10	58	19	1	1	77	0.93
18172971--18173036	14	4.8	14	70	26	52	18	1	3	77	0.98
18172964--18173039	32	2.4	32	80	14	86	19	2	2	75	1.05
18172965--18173035	23	2.9	25	83	14	85	18	2	2	76	1.04
18172964--18173041	16	4.9	16	77	17	72	20	2	2	74	1.06
18173283--18173329	22	2.1	21	81	14	51	42	10	23	23	1.85
18175212--18175266	29	1.9	28	85	3	74	23	20	10	45	1.82
18177012--18177048	12	3.2	12	77	14	51	27	18	0	54	1.44
18177015--18177053	10	3.7	10	86	10	51	28	23	0	48	1.51
18177290--18177371	36	2.3	36	81	10	98	29	34	14	21	1.93
18177381--18177535	52	3.0	52	90	1	240	30	30	13	25	1.94
18180687--18180726	15	2.7	15	88	3	55	72	2	25	0	0.97
18183838--18183956	37	3.2	37	91	4	204	25	37	9	27	1.86
18187886--18188083	72	2.7	73	89	3	285	35	23	20	20	1.96
18200350--18200442	38	2.4	38	87	3	132	22	38	17	21	1.93
18201329--18201378	19	2.6	19	77	0	55	48	8	30	14	1.72
18218199--18218306	35	3.0	36	81	12	118	27	34	13	24	1.93
18218288--18218391	52	2.0	52	92	0	172	31	30	15	22	1.95
18218854--18219601	370	2.0	374	95	1	1351	43	11	19	25	1.84
18219574--18219620	5	9.4	5	79	6	51	74	2	21	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18219574--18219614	14	2.8	15	88	3	57	75	2	21	0	0.92
18219584--18219620	19	1.9	19	89	10	58	72	2	21	2	1.09
18229341--18229369	14	2.0	15	93	6	51	48	13	6	31	1.69
18229433--18229457	13	1.9	13	100	0	50	48	8	0	44	1.32
18234660--18234699	5	8.2	5	91	5	64	40	22	0	37	1.54
18234664--18234699	14	2.5	14	95	4	63	38	22	0	38	1.54
18234659--18234698	19	2.1	19	95	0	71	40	25	0	35	1.56
18234734--18234779	15	3.1	14	84	9	65	54	15	4	26	1.59
18241706--18241743	19	2.0	19	89	0	58	28	2	28	39	1.70
18241909--18241968	30	2.1	29	84	6	77	30	10	21	38	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91