genome.fa.s3.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  73  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26510979--26511015	2	18.5	2	100	0	74	0	51	0	48	1.00
26528837--26528861	6	4.2	6	100	0	50	68	0	0	32	0.90
26537864--26537987	35	3.5	35	77	2	106	24	14	15	45	1.83
26546837--26546870	3	11.3	3	87	0	50	64	2	32	0	1.08
26550823--26550847	2	12.5	2	100	0	50	0	52	0	48	1.00
26552031--26552064	17	1.9	18	88	5	52	41	11	0	47	1.40
26552274--26552308	16	2.2	16	89	0	52	45	2	0	51	1.16
26553051--26553094	17	2.6	17	96	0	79	0	47	4	47	1.22
26554236--26554298	23	2.7	23	82	5	72	44	7	1	46	1.42
26554353--26554383	11	2.8	11	95	0	53	38	0	6	54	1.26
26554393--26554467	26	2.8	26	81	15	75	53	0	1	45	1.08
26556616--26556661	21	2.2	21	84	3	67	28	0	2	69	1.00
26556645--26556733	30	3.0	30	98	0	169	31	3	5	59	1.37
26558093--26558123	2	15.5	2	100	0	62	51	0	0	48	1.00
26559950--26560488	271	2.0	264	86	6	752	32	7	8	51	1.62
26572089--26572149	32	2.0	31	83	6	79	34	11	13	40	1.80
26577610--26577836	111	2.0	113	89	3	352	31	10	28	29	1.90
26583372--26583642	94	2.9	91	80	8	271	36	11	11	40	1.77
26584719--26584772	22	2.4	22	84	9	74	51	0	0	48	1.00
26600065--26600093	8	3.8	8	95	4	51	82	0	0	17	0.66
26600185--26600293	40	2.7	40	79	12	116	41	2	0	55	1.21
26600572--26600631	16	3.9	15	74	22	52	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26600603--26600642	16	2.4	17	83	8	55	45	2	0	52	1.14
26602462--26602493	17	1.9	17	93	6	57	50	3	3	43	1.33
26603559--26603716	34	4.8	34	73	14	87	34	24	20	20	1.96
26604890--26604931	19	2.2	20	86	4	59	45	0	2	52	1.13
26609762--26609800	4	9.8	4	100	0	78	25	0	25	48	1.51
26625124--26625170	2	23.5	2	100	0	94	51	0	0	48	1.00
26625892--26625921	15	1.9	16	93	6	53	43	10	40	6	1.64
26627061--26627087	14	1.9	14	100	0	54	66	7	3	22	1.33
26629118--26629173	2	27.0	2	92	7	94	48	1	1	48	1.22
26667793--26667872	24	3.4	25	77	10	87	70	1	1	27	1.03
26667786--26667959	29	6.7	26	70	18	98	66	0	2	29	1.08
26667928--26668016	27	3.3	27	69	13	67	62	0	3	33	1.11
26668181--26668237	15	3.7	15	88	2	87	42	12	0	45	1.41
26682317--26682350	17	2.0	17	88	0	50	52	0	0	47	1.00
26685562--26685713	56	2.7	55	87	7	209	19	10	25	44	1.83
26687786--26687812	2	13.5	2	100	0	54	0	51	0	48	1.00
26687747--26687879	67	2.0	66	96	0	239	12	29	9	48	1.72
26687854--26687881	2	14.0	2	100	0	56	0	50	0	50	1.00
26693476--26693509	17	2.0	17	88	11	52	58	0	2	38	1.13
26694555--26694666	36	3.1	36	87	2	161	27	15	11	45	1.80
26694556--26694665	37	3.0	37	87	1	159	26	15	11	46	1.80
26715043--26715076	14	2.4	15	90	9	54	38	2	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26741386--26741441	2	28.5	2	83	3	69	48	1	1	46	1.23
26748145--26748180	17	2.1	17	94	0	63	58	5	5	30	1.44
26748283--26748455	85	2.0	86	83	7	221	46	6	6	39	1.56
26753489--26753544	18	3.1	18	78	12	53	55	1	0	42	1.10
26753973--26754017	3	15.0	3	100	0	90	66	0	0	33	0.92
26754557--26754677	61	2.0	61	91	0	197	52	3	3	41	1.34
26754657--26754727	21	3.4	21	74	14	74	64	2	7	25	1.32
26754785--26754844	13	4.8	13	80	17	65	70	0	1	28	0.97
26754780--26754844	4	17.8	4	81	12	54	69	0	1	29	0.98
26754790--26754843	9	5.9	9	76	23	51	72	0	0	27	0.85
26772584--26772637	27	2.0	27	100	0	108	33	14	29	22	1.94
26774402--26774480	22	3.6	22	75	11	74	59	0	0	40	0.97
26774402--26774449	25	1.9	25	87	8	71	56	0	0	43	0.99
26774398--26774461	25	2.5	24	78	14	67	59	0	0	40	0.97
26774448--26774515	26	2.6	25	78	15	75	58	2	1	36	1.22
26782665--26782727	15	4.0	15	75	22	58	52	0	0	47	1.00
26782789--26782866	8	9.9	8	73	15	56	47	1	1	50	1.17
26782816--26782850	15	2.4	14	86	9	52	42	2	2	51	1.31
26782833--26782886	26	2.1	26	86	3	74	44	1	0	53	1.11
26782794--26782872	23	3.5	22	75	13	70	49	1	1	48	1.17
26782920--26782951	10	3.2	10	95	0	55	6	9	0	84	0.78
26784393--26784425	17	2.0	17	88	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26784822--26786651	339	5.4	339	93	0	2890	35	15	15	33	1.90
26786548--26786581	18	1.9	18	94	5	61	38	14	11	35	1.83
26794123--26794211	31	2.9	31	91	1	153	33	12	5	48	1.64
26795147--26795171	10	2.5	10	100	0	50	28	0	8	64	1.22
26799344--26799672	165	2.0	164	100	0	649	58	16	4	20	1.55
26802164--26802203	2	20.0	2	100	0	80	50	0	0	50	1.00
26813274--26813426	77	2.0	77	92	0	252	28	15	22	33	1.94
26813875--26813943	33	1.9	34	83	13	86	47	1	4	46	1.31
26814443--26814516	14	5.1	14	75	14	69	55	1	0	43	1.08
26814471--26814509	13	2.8	13	88	7	51	51	2	0	46	1.14
26814927--26814978	27	1.9	27	100	0	104	48	0	3	48	1.20
26814949--26815069	23	5.4	20	74	20	91	43	0	0	55	1.05
26814927--26814990	27	2.5	26	90	9	98	50	0	3	46	1.17
26814950--26815023	16	5.0	15	71	14	55	41	0	1	56	1.07
26814949--26815044	44	2.2	44	83	9	126	42	0	1	56	1.06
26815020--26815080	25	2.5	25	97	2	115	49	0	0	50	1.00
26815112--26815163	27	2.0	26	88	3	77	48	1	3	46	1.31
26814866--26815204	183	1.9	182	89	4	531	42	1	2	54	1.21
26815159--26815232	26	3.0	23	84	15	87	37	1	0	60	1.05
26815167--26815256	31	2.9	31	81	14	82	35	2	1	61	1.16
26815167--26815233	22	2.8	23	80	13	66	35	1	0	62	1.04
26815265--26815317	19	2.5	20	77	16	54	41	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26815369--26815448	33	2.6	30	81	14	92	37	0	2	60	1.11
26815407--26815455	25	2.0	25	87	0	71	38	0	4	57	1.18
26817138--26817179	12	3.1	14	80	16	52	64	4	4	26	1.33
26817864--26817927	33	1.9	33	87	0	92	42	14	4	39	1.66
26822197--26822244	18	2.7	18	93	0	78	45	4	6	43	1.48
26829408--26829548	74	1.9	74	91	2	230	49	7	13	29	1.70
26830842--26830866	8	3.1	8	100	0	50	36	0	0	64	0.94
26831154--26831203	22	2.2	23	85	3	66	52	0	4	44	1.20
26831208--26831589	203	1.9	205	90	1	615	41	6	4	46	1.52
26832140--26832178	12	3.2	12	78	7	51	71	5	17	5	1.23
26868222--26868599	28	13.8	27	78	5	222	42	11	7	39	1.69
26868167--26868508	82	4.2	82	77	3	240	43	9	7	38	1.67
26868205--26868599	55	7.2	54	75	6	213	42	11	7	39	1.68
26868287--26868599	110	2.9	109	80	3	306	42	12	7	37	1.70
26868168--26868596	137	3.1	136	78	3	421	42	11	7	38	1.69
26868328--26868599	82	3.3	82	82	2	251	43	12	6	36	1.70
26869744--26869787	17	2.5	17	88	3	61	47	2	0	50	1.13
26870097--26870150	23	2.4	23	90	3	83	46	0	5	48	1.25
26872497--26872728	108	2.1	108	99	0	455	20	33	14	31	1.92
26882651--26882701	24	2.1	24	88	0	75	37	23	15	23	1.93
26882708--26882861	29	5.4	30	75	20	134	37	13	16	31	1.88
26882739--26882813	26	3.0	24	76	18	73	38	14	17	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26882708--26882887	29	6.3	29	75	19	132	38	13	15	32	1.86
26883608--26883671	25	2.6	25	97	0	119	40	20	9	29	1.84
26883823--26883881	30	2.0	30	86	6	84	47	11	30	10	1.73
26888813--26888888	24	3.4	22	75	21	68	67	5	27	0	1.12
26891378--26891408	15	2.1	15	100	0	62	67	0	0	32	0.91
26891377--26891470	25	3.9	25	78	16	83	62	1	3	32	1.18
26891484--26891564	34	2.4	35	87	6	121	69	0	2	28	1.02
26891484--26891577	34	2.7	34	78	16	104	67	1	3	28	1.13
26891782--26891835	15	3.6	15	84	0	54	37	22	5	35	1.77
26902456--26902534	40	2.0	40	90	5	124	24	21	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91