genome.fa.s3.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr3
Parameters: 2 7 7 80 10 50 1000
Length:  36364294

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  50  of  91  ( 10898 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17408172--17408204	17	1.9	17	93	0	57	33	18	36	12	1.88
17409068--17409165	33	2.9	33	71	11	83	21	13	29	35	1.91
17428605--17428660	29	1.9	29	85	7	78	51	5	14	28	1.64
17437029--17437287	35	7.2	36	79	6	251	44	12	6	36	1.69
17437003--17437257	35	7.0	35	79	5	204	43	12	7	37	1.69
17437029--17437243	77	2.9	76	86	4	269	43	12	6	36	1.70
17443635--17443710	20	3.8	20	82	3	91	28	19	18	32	1.96
17446000--17446117	42	2.8	42	89	0	182	22	23	32	22	1.98
17448537--17448703	87	1.9	87	85	2	228	29	29	13	27	1.94
17448776--17448999	80	2.8	80	85	1	270	34	24	9	31	1.88
17450553--17450580	2	14.0	2	100	0	56	0	0	50	50	1.00
17466395--17466744	45	7.8	45	83	5	399	18	29	13	38	1.89
17466408--17466741	132	2.5	133	85	6	410	17	28	13	40	1.88
17469820--17469994	87	2.0	87	93	0	296	34	16	23	26	1.95
17474951--17475062	56	2.0	55	98	1	215	37	17	16	27	1.91
17476873--17477063	71	2.7	71	81	3	233	36	17	17	28	1.93
17482427--17482545	43	2.8	43	84	2	150	24	19	36	19	1.94
17482848--17482905	22	2.7	22	81	10	66	22	22	27	27	1.99
17482901--17482994	49	1.9	49	82	4	118	29	18	19	32	1.95
17493923--17495063	591	1.9	591	83	4	1408	37	10	15	36	1.82
17504684--17504725	20	2.0	23	86	13	63	7	33	7	52	1.56
17507745--17507990	87	2.8	87	94	0	429	36	13	12	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17507978--17508016	2	19.5	2	100	0	78	51	0	0	48	1.00
17509178--17509215	14	2.5	15	87	12	51	47	5	0	47	1.24
17509178--17509220	16	2.8	15	80	13	52	48	4	0	46	1.22
17511340--17511436	42	2.3	42	94	0	176	19	23	36	20	1.95
17515261--17515303	21	2.0	21	81	0	50	37	20	20	20	1.95
17517330--17517716	71	5.4	71	81	3	388	28	20	17	33	1.95
17517330--17517716	213	1.8	214	82	6	507	28	20	17	33	1.95
17520556--17520597	16	2.4	18	84	7	52	61	9	0	28	1.27
17529200--17529245	19	2.4	20	82	10	60	54	0	2	43	1.12
17538915--17538939	13	1.9	13	100	0	50	44	0	8	48	1.32
17561395--17561423	13	2.1	14	93	6	51	20	6	0	72	1.07
17565290--17565327	18	2.1	18	90	0	58	0	15	0	84	0.63
17567549--17567598	25	2.0	25	84	0	64	26	2	40	32	1.67
17568654--17568706	23	2.3	23	83	0	61	30	11	33	24	1.90
17568724--17568784	23	2.7	23	84	5	79	27	16	36	19	1.93
17568724--17568799	23	3.3	23	79	3	64	31	14	32	21	1.93
17569315--17569402	27	3.3	27	88	0	131	39	17	18	25	1.91
17574927--17574979	28	1.9	27	84	3	70	30	16	22	30	1.96
17578296--17578398	38	2.6	39	86	6	138	20	16	40	22	1.91
17578729--17578889	60	2.7	59	80	6	171	32	21	19	26	1.97
17582857--17582884	8	3.5	8	100	0	56	78	0	0	21	0.75
17584879--17584924	19	2.4	20	82	10	60	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17588010--17588209	104	1.9	104	79	4	224	28	12	34	25	1.92
17588136--17588291	23	6.7	24	81	8	139	26	16	32	25	1.96
17593196--17593425	35	6.5	35	78	2	217	36	8	11	42	1.72
17593196--17593424	107	2.2	106	83	1	289	36	8	11	42	1.73
17595937--17596105	81	2.1	81	83	2	214	26	19	31	22	1.98
17596555--17596973	220	1.9	220	90	1	669	32	15	17	33	1.92
17597960--17598184	75	3.0	75	86	1	315	30	26	18	24	1.98
17598249--17598322	37	2.0	38	86	7	107	21	13	29	35	1.92
17598910--17598991	38	2.1	39	81	9	94	60	12	1	25	1.39
17601902--17602008	54	2.0	54	90	0	169	34	15	27	22	1.95
17604863--17604896	2	17.0	2	100	0	68	50	0	50	0	1.00
17609682--17609722	13	3.2	13	86	3	57	53	0	4	41	1.22
17619217--17619551	178	1.9	178	85	3	460	33	13	15	37	1.87
17625500--17625535	2	19.0	2	88	11	58	47	0	0	52	1.00
17655391--17655739	181	1.9	181	98	0	673	28	15	6	50	1.67
17659445--17659587	51	2.8	51	77	6	146	23	16	25	34	1.95
17661412--17661473	27	2.3	27	85	2	79	32	16	14	37	1.89
17672120--17672159	21	2.0	21	85	5	55	25	2	7	65	1.32
17674975--17675012	19	2.0	19	94	0	67	28	0	28	42	1.56
17677514--17677543	2	15.0	2	100	0	60	50	0	0	50	1.00
17686293--17686336	22	2.0	22	82	8	54	20	15	0	63	1.31
17690329--17690361	17	1.9	17	88	11	50	39	3	15	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17695133--17695219	42	2.1	42	97	0	165	22	32	21	22	1.98
17697889--17697925	2	18.5	2	88	0	56	51	2	0	45	1.15
17699857--17699897	21	2.0	21	90	0	64	29	17	26	26	1.97
17704645--17704949	151	2.0	151	90	1	486	25	16	26	31	1.97
17707750--17707804	21	2.6	21	85	0	74	30	20	25	23	1.98
17708703--17708751	2	24.5	2	100	0	98	48	0	0	51	1.00
17709192--17709249	19	3.1	19	89	0	98	29	34	24	12	1.91
17713004--17713036	17	1.9	17	88	11	50	39	3	15	42	1.62
17714642--17714690	4	12.2	4	84	0	62	44	0	2	53	1.12
17714642--17714690	6	8.2	6	86	0	62	44	0	2	53	1.12
17714642--17714690	10	4.9	10	89	0	62	44	0	2	53	1.12
17723771--17723823	2	28.0	2	77	11	58	45	0	1	52	1.11
17723945--17724105	70	2.3	70	86	6	211	29	37	6	26	1.82
17723972--17724097	35	3.6	35	75	12	125	27	36	5	30	1.80
17724980--17725020	19	2.2	19	86	4	57	46	2	0	51	1.14
17733127--17733200	2	38.0	2	87	5	107	44	0	1	54	1.08
17733337--17733470	70	1.9	70	92	0	223	28	38	5	28	1.78
17733361--17733478	35	3.3	35	77	10	141	29	38	6	25	1.82
17734858--17734898	20	2.0	22	85	9	59	68	2	4	24	1.22
17741492--17741550	31	1.9	31	96	0	109	28	11	16	42	1.84
17752667--17752725	22	2.7	22	81	0	64	23	22	23	30	1.99
17752996--17753077	37	2.2	37	86	4	121	26	34	9	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17755998--17756076	40	2.0	40	89	0	122	32	25	22	18	1.97
17758690--17758826	2	64.0	2	94	2	166	45	0	45	5	1.32
17760327--17760429	38	2.6	39	83	6	120	22	20	35	21	1.96
17762087--17762198	37	3.0	38	85	5	174	31	9	35	23	1.87
17768081--17768110	13	2.3	13	94	0	51	20	13	50	16	1.78
17768044--17768147	50	2.1	50	96	0	190	26	11	40	21	1.87
17768097--17768200	37	2.8	39	85	7	144	32	10	32	24	1.89
17770131--17770209	40	2.0	40	87	5	115	34	21	22	21	1.97
17779639--17779741	38	2.6	40	83	8	133	22	37	16	23	1.93
17784357--17784382	13	2.0	13	100	0	52	38	0	23	38	1.55
17805037--17805080	21	2.1	21	86	0	61	36	22	18	22	1.95
17805560--17805596	19	2.0	18	89	5	56	18	0	2	78	0.87
17806403--17806441	19	2.1	19	85	0	51	53	2	7	35	1.43
17807507--17807550	21	2.0	24	86	13	67	61	0	38	0	0.96
17810656--17810687	3	10.7	3	93	0	55	37	0	28	34	1.57
17821629--17821688	30	2.1	29	81	6	68	31	8	21	38	1.83
17830175--17830356	73	2.5	73	79	8	176	22	20	17	39	1.93
17832913--17832963	22	2.3	21	81	15	59	68	0	29	1	1.00
17834404--17834468	29	2.2	29	94	0	112	15	13	43	27	1.85
17838158--17839044	220	4.0	220	100	0	1774	31	19	12	36	1.88
17842916--17842985	35	2.0	34	86	8	97	32	25	11	30	1.91
17844109--17844142	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844208--17844241	2	17.0	2	100	0	68	50	0	0	50	1.00
17844045--17844242	99	2.0	98	98	1	378	32	14	15	37	1.87
17844282--17844327	18	2.6	18	89	0	65	67	2	10	19	1.31
17845846--17845969	43	2.9	43	91	4	189	23	35	17	23	1.95
17848041--17848086	23	2.0	23	86	0	65	39	17	19	23	1.92
17850584--17850644	10	6.2	9	76	19	52	70	3	22	3	1.17
17855446--17855529	37	2.3	37	81	4	98	21	21	20	36	1.95
17857633--17858000	190	1.9	189	95	0	655	32	18	12	37	1.88
17859685--17859724	20	2.0	20	85	5	53	75	2	2	20	1.04
17859695--17859738	20	2.2	20	87	0	61	68	6	2	22	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91