genome.fa.s201.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  10  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1657165--1657405	133	1.8	133	93	0	419	31	20	24	24	1.98
1662243--1662284	21	2.0	21	95	4	77	50	0	0	50	1.00
1663916--1663975	2	31.5	2	73	9	54	53	1	3	41	1.27
1663913--1663955	11	4.0	11	82	14	54	55	0	2	41	1.12
1663916--1663986	36	2.0	36	83	5	90	54	1	4	39	1.28
1664429--1664454	8	3.2	8	100	0	52	65	0	23	11	1.25
1664862--1665100	82	2.9	82	84	3	320	46	7	11	35	1.67
1667988--1668012	12	2.1	12	100	0	50	52	8	16	24	1.70
1670771--1670882	51	2.2	52	79	4	120	47	4	1	46	1.33
1670955--1671001	16	2.7	18	84	15	64	74	2	8	14	1.15
1673097--1673140	21	2.0	22	91	4	72	61	13	4	20	1.50
1676515--1676556	21	2.1	20	82	8	50	33	2	11	52	1.51
1676915--1676983	36	1.9	36	82	2	86	40	5	2	50	1.41
1676976--1677012	17	2.1	19	85	10	51	37	0	2	59	1.12
1677028--1677081	16	3.7	15	77	22	53	46	1	0	51	1.11
1678098--1678152	27	2.0	29	85	7	78	56	1	1	40	1.21
1678085--1678138	18	3.0	17	74	12	54	57	1	0	40	1.09
1680022--1680050	8	3.8	8	95	4	51	17	0	0	82	0.66
1681482--1681753	138	2.0	138	95	2	494	35	14	22	27	1.93
1683029--1683067	2	20.5	2	84	10	55	48	2	0	48	1.15
1683029--1683067	17	2.3	17	95	0	69	48	2	0	48	1.15
1683764--1683810	25	1.9	23	87	12	67	8	19	4	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683699--1683970	132	2.1	132	95	0	490	15	15	10	58	1.63
1686287--1686345	25	2.4	25	91	0	91	40	8	10	40	1.69
1687209--1687272	34	1.9	33	90	3	101	37	9	7	45	1.66
1687535--1687559	1	25.0	1	100	0	50	0	0	0	100	0.00
1688391--1688416	3	8.7	3	100	0	52	34	0	0	65	0.93
1689013--1689456	174	2.5	174	94	1	762	26	18	17	37	1.93
1689509--1689699	4	46.8	4	68	20	62	28	3	2	65	1.19
1689542--1689674	29	4.6	29	76	14	123	30	3	3	63	1.25
1689613--1689730	42	2.8	42	88	6	150	27	5	0	65	1.22
1690553--1690640	17	5.0	18	74	21	62	13	4	3	78	1.04
1690571--1690627	14	3.9	14	83	6	69	10	3	3	82	0.91
1690651--1690986	58	5.8	57	83	5	336	45	6	11	36	1.66
1690652--1690986	116	2.9	115	84	7	428	45	6	11	37	1.67
1691043--1691082	16	2.5	16	87	0	53	5	12	2	80	0.98
1691042--1691083	22	2.0	21	81	9	50	7	11	2	78	1.04
1701268--1701305	17	2.2	18	90	4	60	81	0	5	13	0.85
1701268--1701306	18	2.2	18	86	9	53	82	0	5	12	0.83
1702312--1702446	41	3.2	40	79	10	137	27	11	20	40	1.88
1702339--1702606	84	3.1	84	78	8	279	25	14	20	40	1.90
1702358--1702582	46	5.0	46	79	11	234	25	13	20	40	1.89
1702796--1703015	4	55.8	4	68	17	74	26	3	2	66	1.21
1702796--1702874	36	2.2	38	78	17	96	18	1	5	74	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1702858--1703002	3	42.7	3	70	20	58	30	4	1	64	1.21
1702869--1702977	29	3.8	28	79	15	107	31	4	1	62	1.26
1702933--1703033	20	4.8	20	87	6	121	29	6	0	63	1.20
1702982--1703044	22	3.0	22	77	13	69	28	9	0	61	1.27
1703376--1703443	31	2.2	32	84	7	86	17	10	22	50	1.76
1703804--1703844	4	11.2	4	94	5	54	26	0	0	73	0.84
1703804--1703845	13	2.9	15	83	16	54	28	0	0	71	0.86
1703864--1703920	11	5.3	11	77	8	55	15	3	1	78	0.96
1703854--1703915	27	2.3	27	78	18	67	16	4	3	75	1.10
1703938--1704157	58	3.8	59	83	7	288	42	5	13	37	1.69
1703937--1704152	117	1.8	117	87	5	321	43	5	13	37	1.67
1705303--1705354	22	2.3	23	77	9	63	17	3	3	75	1.11
1707765--1707852	42	2.1	43	93	2	151	53	5	15	25	1.64
1708453--1708494	22	1.9	22	85	0	57	54	2	2	40	1.26
1710821--1710848	2	14.0	2	100	0	56	0	50	0	50	1.00
1720649--1720678	2	15.0	2	92	0	51	0	50	3	46	1.18
1721289--1721487	97	2.1	96	84	5	258	35	2	7	54	1.42
1738661--1738692	16	2.0	16	100	0	64	43	18	0	37	1.51
1738687--1738719	15	2.2	15	94	0	57	36	18	6	39	1.75
1741229--1741358	65	2.0	65	95	3	235	31	5	15	47	1.68
1742744--1742781	2	19.0	2	100	0	76	0	50	0	50	1.00
1743372--1743415	10	4.5	10	81	16	56	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743372--1743415	20	2.2	20	88	4	63	31	0	2	65	1.05
1743443--1743494	27	1.9	27	96	0	95	42	3	0	53	1.19
1748859--1748915	27	2.1	27	100	0	114	17	10	15	56	1.67
1757233--1757318	45	1.9	46	88	4	131	56	0	1	41	1.06
1757295--1757354	25	2.3	26	78	15	63	55	0	1	43	1.10
1757519--1757564	22	2.0	24	87	8	69	41	0	0	58	0.98
1760480--1760508	14	2.1	14	100	0	58	51	6	0	41	1.28
1764443--1764468	1	26.0	1	100	0	52	100	0	0	0	0.00
1765185--1765280	30	3.2	29	76	7	95	50	4	6	39	1.47
1765199--1765305	29	3.6	29	81	5	115	50	3	2	42	1.34
1765416--1765461	23	2.0	23	100	0	92	39	8	17	34	1.80
1768176--1768231	29	2.0	28	82	10	69	48	3	3	44	1.37
1769243--1769283	21	1.9	22	85	5	57	48	0	2	48	1.14
1769285--1769356	28	2.8	25	76	15	74	56	0	1	41	1.07
1769317--1769358	13	3.2	13	77	12	50	61	0	0	38	0.96
1769350--1769391	22	1.9	22	85	0	57	66	2	0	30	1.04
1777549--1777598	25	2.0	26	88	4	75	32	0	0	68	0.90
1777552--1777610	25	2.3	25	79	2	64	38	0	0	61	0.96
1777646--1777680	18	1.9	18	94	0	61	62	0	0	37	0.95
1777701--1777744	13	3.6	13	85	14	58	47	0	0	52	1.00
1779591--1779627	3	12.0	3	88	5	56	64	2	0	32	1.07
1780919--1780985	3	22.7	3	71	19	52	70	2	2	23	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781176--1781230	16	3.2	16	78	14	56	63	0	1	34	1.05
1786091--1786137	24	2.0	24	86	0	67	29	12	12	44	1.80
1793004--1793062	23	2.6	23	73	10	57	49	23	3	23	1.65
1793019--1793060	15	2.7	16	85	10	52	52	21	0	26	1.47
1799408--1799436	14	2.0	15	93	6	51	51	0	0	48	1.00
1799418--1799457	21	1.9	21	85	10	55	45	0	0	55	0.99
1800774--1801453	332	2.0	333	94	3	1185	55	4	7	33	1.47
1801437--1801488	21	2.5	20	82	17	63	67	0	3	28	1.08
1801426--1801485	22	2.8	22	73	21	56	66	0	3	30	1.07
1801682--1801716	16	2.2	16	94	0	61	54	20	0	25	1.45
1801667--1801724	24	2.4	23	88	5	80	50	24	0	25	1.50
1801667--1801725	16	3.8	16	81	2	57	49	23	0	27	1.51
1810070--1810125	27	2.1	26	83	9	69	42	3	1	51	1.29
1810580--1810642	27	2.4	27	86	7	85	55	0	0	44	0.99
1810582--1810639	14	4.3	13	80	8	71	56	0	0	43	0.99
1811272--1811327	24	2.3	25	78	9	62	58	8	0	32	1.29
1819183--1819251	31	2.3	30	84	2	84	55	0	5	39	1.24
1824011--1824079	23	3.0	21	79	12	66	42	1	1	55	1.18
1834204--1834235	16	2.0	16	100	0	64	37	18	12	31	1.88
1835646--1835702	30	1.9	30	85	0	78	50	1	14	33	1.52
1835708--1835765	29	2.0	29	82	0	71	55	1	5	37	1.33
1837367--1837424	25	2.3	26	81	6	73	36	5	5	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1838041--1838076	18	2.1	18	89	5	56	52	0	8	38	1.32
1838451--1838525	29	2.8	26	71	15	71	53	0	0	46	1.00
1838443--1838510	15	4.5	15	74	10	59	52	0	0	47	1.00
1845956--1846007	22	2.4	22	90	0	77	5	28	19	46	1.73
1846676--1846700	12	2.1	12	100	0	50	24	56	0	20	1.43
1848593--1848661	12	5.7	12	72	19	54	31	0	0	68	0.90
1848586--1848656	24	3.0	23	77	22	69	30	0	0	69	0.89
1852081--1852115	15	2.2	16	95	5	63	91	8	0	0	0.42
1853802--1853853	17	3.0	17	74	20	54	50	3	0	46	1.20
1853802--1853851	18	2.8	18	82	11	59	52	4	0	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91