genome.fa.s201.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  90  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15292705--15292962	82	3.2	82	81	2	261	25	14	20	38	1.91
15296707--15296739	2	16.5	2	100	0	66	51	0	0	48	1.00
15297848--15297873	13	2.0	13	100	0	52	46	7	7	38	1.61
15297875--15298097	109	2.1	108	90	2	349	37	9	16	37	1.81
15299261--15299314	8	6.6	8	85	4	63	79	3	5	11	1.02
15299262--15299314	24	2.2	24	86	6	72	79	3	5	11	1.03
15300346--15300425	41	2.0	41	97	0	151	26	12	20	41	1.87
15300438--15300615	41	4.3	41	74	14	161	21	11	20	46	1.83
15300321--15300535	109	2.0	111	83	5	276	24	11	19	44	1.83
15300435--15300615	80	2.2	79	79	15	190	20	12	20	46	1.82
15300811--15300835	5	5.0	5	100	0	50	20	0	0	80	0.72
15301917--15301978	25	2.5	24	78	7	61	43	8	12	35	1.73
15311247--15311300	19	2.8	21	68	26	55	59	7	0	33	1.25
15311909--15311940	3	10.7	3	100	0	64	65	0	0	34	0.93
15316992--15317085	30	3.3	30	74	17	119	15	29	15	38	1.90
15317016--15317097	24	3.2	24	70	18	74	14	29	15	40	1.87
15316979--15317101	54	2.3	54	98	0	237	16	30	17	36	1.91
15321123--15321193	29	2.4	29	78	2	79	46	2	5	45	1.41
15321261--15321342	29	2.7	30	77	5	76	54	6	0	39	1.25
15322009--15322126	61	1.9	61	82	0	146	31	14	8	45	1.75
15322039--15322242	59	3.4	59	78	8	173	28	13	11	47	1.77
15322120--15322242	58	2.1	58	86	3	167	26	11	13	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15322222--15322363	61	2.3	61	79	4	171	33	12	7	46	1.71
15322533--15322671	71	2.0	71	89	0	215	28	19	19	33	1.96
15325836--15325862	14	1.9	14	100	0	54	74	3	0	22	0.98
15325903--15325927	4	6.2	4	100	0	50	76	0	0	24	0.80
15336994--15337207	78	2.7	79	81	5	243	27	14	16	41	1.88
15337831--15337881	24	2.2	23	79	6	59	15	7	3	72	1.23
15337860--15337937	13	5.7	14	77	18	58	19	3	0	76	0.93
15337864--15337936	6	11.5	6	73	21	60	17	4	0	78	0.91
15337846--15337926	14	6.0	13	79	12	76	17	4	1	76	1.03
15337865--15337936	17	3.8	18	76	18	58	18	4	0	77	0.92
15337879--15337932	28	2.0	28	89	10	87	18	3	0	77	0.91
15338856--15338907	3	17.7	3	81	18	56	69	1	1	26	1.10
15339828--15339977	75	2.0	74	96	1	273	39	14	13	32	1.85
15340922--15340959	3	12.7	3	88	0	58	5	0	28	65	1.14
15340922--15340970	21	2.3	21	92	0	80	8	2	24	65	1.31
15340969--15341037	19	3.8	17	75	20	59	20	1	2	75	1.01
15340985--15341037	19	2.8	20	82	8	74	18	0	3	77	0.92
15340983--15341036	24	2.3	23	84	12	65	20	0	3	75	0.95
15341493--15341552	2	30.0	2	100	0	120	50	0	50	0	1.00
15341744--15341803	4	15.5	4	75	6	52	20	5	1	73	1.11
15343208--15343326	22	5.4	22	70	11	73	36	10	4	47	1.58
15345828--15345879	16	3.7	13	74	18	50	26	3	1	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15347082--15347126	17	2.6	18	82	7	56	42	0	0	57	0.98
15353002--15353030	9	3.3	9	90	9	51	89	0	10	0	0.48
15354750--15354787	3	12.7	3	100	0	76	65	0	0	34	0.93
15358689--15358842	52	3.0	52	83	7	190	26	24	8	40	1.83
15360184--15360280	25	3.7	25	75	10	86	24	9	14	51	1.71
15360184--15360255	29	2.6	29	80	8	80	23	9	11	55	1.64
15360263--15360497	59	3.9	61	77	6	185	31	13	10	44	1.78
15360292--15360520	59	3.8	59	76	9	185	30	13	10	45	1.78
15360613--15360687	33	2.2	33	83	2	96	32	10	10	46	1.73
15361703--15361748	24	1.9	24	86	8	67	10	10	0	78	0.97
15361901--15361950	23	2.2	23	92	0	82	40	12	22	26	1.88
15362308--15362332	12	2.1	12	100	0	50	20	16	48	16	1.82
15362895--15362920	10	2.6	10	100	0	52	80	0	0	19	0.71
15375117--15375620	47	10.6	47	81	7	482	30	11	18	39	1.86
15375117--15375614	189	2.6	186	79	7	554	30	10	18	39	1.85
15375859--15375910	3	17.3	3	100	0	104	32	0	0	67	0.91
15376075--15376124	23	2.2	23	89	7	75	44	14	18	24	1.86
15384401--15384510	30	3.7	30	75	6	100	59	1	4	34	1.29
15384946--15384984	13	2.9	13	82	17	53	51	0	0	48	1.00
15384951--15384984	15	2.4	15	90	9	54	44	0	0	55	0.99
15384946--15385005	15	4.1	14	73	19	52	55	0	0	45	0.99
15388758--15388804	20	2.3	20	85	0	58	25	4	12	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15388771--15388810	20	2.0	20	90	0	62	30	0	10	60	1.30
15394600--15394681	29	2.7	30	77	5	76	54	6	0	39	1.25
15395165--15395346	57	3.1	56	76	13	136	32	11	7	47	1.68
15395385--15395573	59	3.2	60	78	6	204	31	13	11	42	1.80
15395385--15395611	118	1.9	120	79	3	253	30	14	10	44	1.78
15395522--15395682	60	2.7	60	83	5	175	31	13	10	44	1.78
15395519--15395709	61	3.2	60	82	5	190	30	13	9	46	1.76
15395878--15396012	71	1.9	71	86	3	191	28	19	19	33	1.96
15402523--15402554	15	2.1	15	94	0	55	34	6	6	53	1.51
15403436--15403775	156	2.2	153	82	4	398	33	22	18	25	1.96
15404579--15404657	29	2.8	29	75	9	74	58	2	8	30	1.42
15410276--15410345	17	4.2	16	87	5	104	48	35	0	15	1.46
15410280--15410344	33	2.0	33	93	6	114	44	38	0	16	1.48
15410363--15410420	14	3.9	15	77	8	64	46	31	0	22	1.52
15410414--15410457	14	2.9	15	83	16	56	47	38	0	13	1.43
15412390--15412422	15	2.2	15	94	0	57	24	0	30	45	1.53
15412443--15412525	39	2.1	39	93	0	139	27	2	14	55	1.52
15414099--15414147	17	2.8	17	78	9	53	46	0	4	48	1.20
15414858--15415240	59	6.4	58	86	8	509	32	13	7	45	1.72
15414888--15415247	185	1.9	186	90	5	577	32	13	8	46	1.72
15415319--15415360	16	2.6	16	81	7	50	76	2	2	19	1.01
15415795--15415865	31	2.3	31	87	0	97	25	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15415874--15415926	25	2.1	25	86	6	72	43	16	5	33	1.72
15416432--15416461	3	10.0	3	100	0	60	66	0	0	33	0.92
15416434--15416475	15	2.9	14	86	10	50	66	2	2	28	1.16
15417366--15417393	1	28.0	1	100	0	56	100	0	0	0	0.00
15417862--15417903	14	3.1	13	86	10	57	54	0	0	45	0.99
15417952--15417993	13	3.2	13	90	6	59	23	0	2	73	0.94
15417952--15417993	12	3.2	13	90	6	59	23	0	2	73	0.94
15418152--15418212	28	2.2	28	87	0	95	47	0	3	49	1.18
15424777--15424924	73	2.0	73	85	2	199	29	18	16	36	1.92
15428563--15428604	20	2.1	20	86	0	57	40	0	2	57	1.12
15429422--15429461	21	1.9	21	89	0	62	17	35	0	47	1.48
15430764--15430896	45	2.9	45	82	7	171	41	10	13	34	1.79
15431023--15431203	46	4.0	46	93	2	278	41	11	13	33	1.80
15430757--15431470	313	2.3	312	92	1	1175	35	14	15	35	1.88
15431336--15431471	46	3.0	44	84	5	157	40	11	13	33	1.82
15431602--15431695	44	2.1	45	86	7	131	41	10	13	34	1.79
15431067--15431690	266	2.3	267	90	1	1002	34	14	15	35	1.88
15431380--15431910	220	2.4	220	94	0	909	33	14	16	35	1.89
15431822--15431957	46	3.0	45	88	3	193	40	11	14	33	1.83
15431602--15432333	266	2.8	266	95	0	1306	33	14	16	35	1.88
15431113--15432176	486	2.2	487	93	1	1810	33	14	16	35	1.89
15432088--15432223	46	3.0	45	90	3	202	41	11	13	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15432964--15433030	21	3.2	21	79	12	75	52	1	28	17	1.54
15433747--15433785	20	2.0	20	89	0	60	53	2	2	41	1.28
15436925--15437031	12	8.6	12	69	22	53	65	2	1	29	1.17
15436931--15437031	16	5.8	16	67	24	62	65	2	1	29	1.18
15436943--15436988	17	2.5	20	82	13	62	63	2	2	32	1.19
15438112--15438212	22	4.6	22	74	7	80	47	2	10	38	1.54
15438047--15438212	22	7.5	22	70	9	77	48	1	10	38	1.49
15440530--15440575	23	2.0	23	86	4	65	34	8	0	56	1.30
15451858--15451888	13	2.5	12	90	10	53	38	0	3	58	1.15
15452618--15452650	18	1.9	17	88	11	50	45	6	9	39	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91