genome.fa.s201.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  9  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1510347--1510397	24	2.1	25	82	10	61	43	0	7	49	1.32
1510436--1510462	8	3.4	8	100	0	54	62	0	0	37	0.95
1510632--1510663	16	2.1	15	94	5	55	62	0	0	37	0.95
1510917--1510958	2	20.5	2	87	4	57	52	2	2	42	1.27
1511099--1511129	2	15.5	2	100	0	62	48	0	0	51	1.00
1512178--1512202	13	1.9	13	100	0	50	48	24	16	12	1.79
1512350--1512406	4	14.8	4	78	7	55	28	0	22	49	1.50
1512359--1512406	22	2.2	22	88	0	69	29	0	20	50	1.49
1512351--1512391	14	2.9	14	81	0	55	31	0	17	51	1.46
1513114--1513158	20	2.2	20	92	7	74	31	0	0	68	0.89
1513114--1513160	10	4.7	10	81	0	58	34	0	0	65	0.93
1513176--1513227	21	2.3	23	80	12	63	57	0	0	42	0.98
1518135--1518192	30	1.9	30	89	0	89	29	22	3	44	1.69
1519810--1519849	21	2.0	20	85	5	53	42	7	7	42	1.61
1523639--1523821	60	3.0	60	86	1	267	19	20	22	37	1.95
1529030--1529060	2	15.5	2	100	0	62	48	0	0	51	1.00
1529422--1529447	10	2.6	10	100	0	52	92	0	0	7	0.39
1529561--1529617	12	4.5	12	72	12	51	59	0	3	36	1.14
1529821--1529901	24	3.5	24	66	14	62	54	0	0	45	0.99
1529884--1529925	21	2.0	21	90	0	66	71	4	0	23	1.05
1532588--1532763	60	3.0	60	84	4	211	20	19	23	36	1.95
1536627--1536663	15	2.4	16	91	8	60	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539461--1539525	4	16.8	4	79	6	62	24	4	24	46	1.72
1539452--1539531	34	2.4	34	93	0	133	28	3	21	46	1.68
1539346--1539855	193	2.6	195	85	6	627	21	13	18	46	1.84
1539681--1539726	12	4.0	12	77	11	51	30	2	17	50	1.58
1539684--1539712	14	2.1	14	100	0	58	34	0	13	51	1.42
1539662--1539726	34	1.9	34	90	0	103	29	4	16	49	1.66
1539455--1539855	207	1.9	206	91	0	658	22	12	18	46	1.83
1539876--1539967	10	9.2	10	73	4	69	44	4	7	43	1.52
1539876--1539967	4	23.0	4	78	4	69	44	4	7	43	1.52
1539902--1539967	12	5.5	12	83	0	87	42	1	9	46	1.44
1539902--1539967	16	4.1	16	82	0	78	42	1	9	46	1.44
1540099--1540149	20	2.7	19	91	8	86	35	3	13	47	1.62
1540101--1540152	22	2.5	22	90	6	81	34	3	15	46	1.64
1540872--1540912	10	4.0	10	84	6	55	24	0	0	75	0.80
1540879--1540915	18	2.0	19	89	5	58	27	0	0	72	0.84
1540872--1540912	21	2.0	20	90	9	66	24	0	0	75	0.80
1540942--1540987	22	2.0	24	87	8	69	52	2	0	45	1.13
1543889--1543913	13	1.9	13	100	0	50	24	0	8	68	1.16
1554361--1554390	15	1.9	16	93	6	53	66	0	0	33	0.92
1555148--1555187	21	1.9	21	84	0	53	55	2	0	42	1.13
1557219--1557261	4	10.8	4	84	0	50	23	2	25	48	1.62
1557176--1557229	22	2.5	22	84	0	72	37	5	12	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557176--1557243	16	4.5	16	73	10	54	33	5	16	44	1.72
1557397--1557422	2	13.0	2	100	0	52	50	0	0	50	1.00
1557068--1557610	195	2.8	191	83	5	688	24	14	17	44	1.86
1557557--1557736	4	46.2	4	73	9	59	32	4	16	46	1.67
1557557--1557635	34	2.3	34	91	0	122	30	5	20	44	1.73
1557570--1557631	12	5.3	12	75	7	65	27	6	22	43	1.77
1557646--1557692	18	2.8	17	90	6	69	36	4	10	48	1.57
1558375--1558409	13	2.7	13	90	0	61	48	0	0	51	1.00
1558459--1558499	21	2.0	21	86	9	59	36	0	0	63	0.95
1558528--1558575	22	2.1	24	88	7	73	47	0	0	52	1.00
1563437--1563494	30	1.9	30	89	0	89	27	24	3	44	1.69
1568013--1568194	60	3.0	60	88	0	274	21	21	21	35	1.96
1574325--1574353	13	2.1	14	93	6	51	62	13	0	24	1.32
1575541--1575577	11	3.4	11	84	0	56	48	0	0	51	1.00
1576407--1576455	25	1.9	26	83	4	64	40	0	2	57	1.10
1576425--1576469	22	2.0	23	82	4	56	51	0	2	46	1.13
1576498--1576551	23	2.4	23	87	3	74	31	0	0	68	0.90
1576514--1576555	11	3.7	11	87	6	66	28	0	0	71	0.86
1576518--1576557	15	2.7	15	88	7	55	27	0	0	72	0.85
1577134--1577176	17	2.5	17	78	17	52	37	0	0	62	0.95
1577134--1577179	18	2.6	19	80	13	62	39	0	0	60	0.97
1579010--1579083	31	2.4	31	95	2	132	37	0	5	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582006--1582060	18	2.9	18	78	5	56	54	0	0	45	0.99
1588332--1588371	19	2.1	19	100	0	80	27	0	47	25	1.52
1589172--1589256	42	2.0	42	95	4	154	40	22	21	16	1.91
1597013--1597096	42	1.9	45	88	7	129	41	7	3	47	1.48
1605501--1606036	265	2.0	267	93	0	923	30	10	16	42	1.82
1613433--1613465	16	2.1	16	94	0	57	54	9	18	18	1.69
1617316--1617387	36	2.0	36	88	0	108	50	12	25	12	1.75
1622330--1622369	19	2.2	19	86	4	55	35	10	12	42	1.76
1623193--1623221	2	14.5	2	100	0	58	48	0	0	51	1.00
1623386--1623425	21	1.9	21	89	0	62	40	0	0	60	0.97
1623570--1623610	2	20.5	2	100	0	82	48	0	0	51	1.00
1625224--1625281	24	2.4	24	80	13	73	72	0	25	1	0.94
1625326--1625391	17	3.7	19	82	13	63	78	0	21	0	0.75
1625336--1625391	7	7.7	7	76	20	53	82	0	17	0	0.68
1625334--1625391	8	7.0	8	75	21	57	81	0	18	0	0.70
1625773--1625813	9	4.7	9	93	6	59	24	0	7	68	1.15
1625773--1625942	18	9.6	18	68	25	64	28	1	5	65	1.22
1625775--1625820	24	2.0	23	87	12	67	26	0	6	67	1.15
1625835--1625925	4	21.5	4	72	16	60	26	1	4	68	1.15
1625852--1625925	31	2.4	30	80	10	87	27	0	5	67	1.12
1626360--1626402	18	2.4	18	92	0	68	37	16	11	34	1.85
1626903--1626979	4	19.0	4	77	15	61	24	1	3	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626967--1627017	10	5.0	10	75	20	52	11	7	1	78	1.04
1627062--1627512	117	3.8	116	89	4	649	45	6	13	35	1.69
1627064--1627512	59	7.7	58	87	5	593	45	6	13	34	1.69
1629285--1629310	10	2.6	10	100	0	52	46	0	0	53	1.00
1629319--1629343	13	1.9	13	100	0	50	72	4	8	16	1.24
1631416--1631936	119	4.4	118	75	2	382	44	12	21	21	1.85
1631488--1631934	238	1.9	238	80	2	522	44	11	21	22	1.84
1632740--1632777	16	2.3	17	86	4	51	2	15	2	78	0.97
1632756--1632801	22	2.1	21	84	11	58	8	4	2	84	0.83
1632756--1632817	31	1.9	32	83	6	81	8	6	4	80	1.01
1633632--1633656	11	2.3	11	100	0	50	60	0	24	16	1.36
1637063--1637104	20	2.2	19	87	8	59	80	7	2	9	0.97
1637085--1637120	16	2.2	16	90	0	54	77	5	2	13	1.05
1637526--1637587	30	2.0	32	84	6	83	51	0	1	46	1.10
1637543--1637587	8	5.8	8	86	2	65	60	0	0	40	0.97
1637573--1637628	20	2.8	20	75	5	51	64	0	0	35	0.94
1638487--1638553	3	23.7	3	72	11	52	61	2	2	32	1.26
1638489--1638553	11	6.1	11	75	18	50	61	3	3	32	1.27
1638487--1638530	14	3.0	14	80	6	52	56	2	4	36	1.32
1638946--1638976	16	2.0	15	93	6	53	25	0	0	74	0.82
1638950--1638984	16	2.2	16	89	0	52	28	0	0	71	0.86
1639241--1639266	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640904--1640940	3	12.3	3	88	0	56	29	2	2	64	1.21
1640905--1640953	24	2.2	24	82	10	59	30	2	6	61	1.32
1646992--1647337	178	1.9	178	86	4	491	36	12	14	36	1.84
1648256--1648299	21	2.1	21	95	0	79	65	0	0	34	0.93
1654446--1654479	10	3.3	10	87	4	50	26	0	2	70	1.01
1654670--1654730	10	5.8	10	75	12	52	24	3	4	67	1.26
1654806--1654839	12	2.8	12	86	0	50	32	5	14	47	1.69
1656058--1656113	16	3.6	16	76	9	53	44	0	0	55	0.99
1656055--1656113	30	2.0	30	86	0	82	45	0	0	54	0.99
1657057--1657268	108	2.0	106	94	1	370	30	21	22	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91