genome.fa.s201.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  86  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14564373--14564416	23	1.9	23	86	9	63	15	9	0	75	1.05
14564423--14564617	60	3.2	60	86	9	256	47	6	13	32	1.67
14564425--14564627	59	3.4	59	85	6	275	48	6	13	31	1.69
14564546--14564701	76	2.1	74	86	7	215	46	7	14	30	1.73
14564502--14564753	135	1.9	133	91	3	416	44	7	15	33	1.74
14564621--14564793	60	3.0	57	84	9	224	44	8	13	33	1.74
14573206--14573245	21	2.0	21	95	5	73	45	0	0	55	0.99
14575652--14575681	12	2.5	12	88	0	51	63	6	0	30	1.20
14578457--14578502	19	2.6	18	80	10	58	71	6	2	19	1.18
14579463--14579507	24	1.9	23	86	13	65	11	15	2	71	1.24
14579490--14579514	13	1.9	13	100	0	50	8	8	0	84	0.79
14580281--14580331	17	2.9	17	80	11	59	45	5	7	41	1.57
14580274--14580329	18	3.2	17	78	14	60	48	3	8	39	1.52
14580092--14580586	180	2.7	177	80	9	518	41	6	8	44	1.60
14580462--14580509	17	2.7	18	84	12	64	47	2	8	41	1.45
14580743--14580787	20	2.2	20	80	0	54	42	17	8	31	1.80
14581571--14581621	9	5.6	9	79	11	50	64	21	1	11	1.36
14581550--14581594	22	2.0	22	87	8	65	64	26	2	6	1.30
14581652--14581698	18	2.6	18	77	12	51	53	27	6	12	1.63
14581724--14581839	9	12.8	9	67	19	55	62	25	1	10	1.36
14581700--14581756	18	3.1	18	84	5	60	61	21	0	17	1.35
14581715--14581756	20	2.2	18	87	8	57	66	16	0	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14581765--14581811	19	2.5	19	82	6	51	55	31	2	10	1.46
14581765--14581881	47	2.5	47	78	12	116	55	27	5	11	1.57
14581819--14581880	28	2.3	26	80	20	74	51	27	6	14	1.66
14582068--14582108	18	2.2	18	86	4	55	53	29	4	12	1.58
14582267--14582310	21	2.2	20	87	4	61	68	22	0	9	1.18
14587294--14587341	25	1.9	25	87	8	71	22	47	8	20	1.77
14588591--14588628	8	4.8	8	87	12	60	65	0	0	34	0.93
14599795--14599838	19	2.3	18	81	11	52	18	6	0	75	1.02
14600096--14600133	19	2.0	19	89	0	58	7	5	31	55	1.51
14600464--14600489	3	8.7	3	100	0	52	30	0	0	69	0.89
14600763--14600815	25	2.2	25	83	10	65	62	5	7	24	1.44
14606284--14606335	3	17.3	3	100	0	104	32	0	0	67	0.91
14606376--14606424	21	2.3	20	82	6	53	24	4	0	71	1.03
14607095--14607129	15	2.4	15	90	4	54	5	8	2	82	0.91
14608383--14608478	8	11.8	8	73	12	52	25	0	1	73	0.89
14608390--14608470	25	3.1	25	80	13	92	25	0	1	72	0.92
14608390--14608490	21	4.8	20	73	24	75	24	0	1	73	0.94
14608388--14608483	25	4.0	24	69	21	67	25	0	2	72	0.95
14608386--14608491	33	3.3	32	75	22	98	24	0	1	73	0.93
14609559--14609606	23	2.1	23	92	0	78	52	4	4	39	1.40
14609562--14609612	23	2.4	22	84	12	63	52	3	1	41	1.31
14609932--14609979	25	1.9	25	87	8	71	39	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14609936--14609982	14	3.8	12	78	13	51	42	0	4	53	1.20
14610510--14610564	22	2.4	23	76	14	60	65	1	1	30	1.13
14611247--14611307	12	5.1	12	75	18	56	22	0	1	75	0.89
14611247--14611305	8	7.1	8	80	14	66	22	0	1	76	0.88
14611256--14611305	25	2.0	27	77	18	54	24	0	2	74	0.93
14611315--14611380	28	2.4	27	85	9	82	36	3	1	59	1.22
14611319--14611380	24	2.5	24	89	5	88	35	3	1	59	1.23
14611978--14612019	18	2.3	18	83	4	57	57	0	42	0	0.99
14612339--14612410	6	12.2	6	75	16	62	19	2	0	77	0.88
14612343--14612412	12	6.0	11	81	18	72	20	2	0	77	0.90
14612342--14612408	28	2.6	25	82	15	82	19	2	0	77	0.89
14612342--14612409	5	12.8	5	73	17	50	19	2	0	77	0.89
14612360--14612411	20	2.6	19	82	14	61	19	1	0	78	0.84
14612340--14612409	36	2.0	35	86	13	99	20	2	0	77	0.90
14612392--14612703	120	2.6	119	81	8	337	46	5	10	37	1.62
14612435--14612705	60	4.5	59	88	4	375	46	6	11	35	1.67
14617374--14617503	63	2.1	63	89	0	197	37	8	23	30	1.84
14618111--14618192	43	1.9	42	87	7	121	36	13	15	34	1.87
14618487--14618739	42	6.1	41	79	8	228	26	16	19	37	1.93
14618556--14619088	42	12.5	42	70	14	245	27	14	19	38	1.91
14618556--14618728	83	2.1	83	86	4	242	23	16	21	38	1.93
14618706--14618920	88	2.4	91	87	8	314	32	13	17	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14618880--14619090	83	2.5	82	81	11	225	24	15	19	40	1.90
14619273--14619433	12	13.4	12	66	21	56	27	3	1	67	1.18
14619278--14619323	17	2.8	16	81	18	58	23	0	0	76	0.79
14619284--14619380	33	3.0	33	76	8	101	28	2	3	65	1.18
14619280--14619411	8	18.3	7	71	20	53	30	3	2	63	1.24
14619346--14619401	24	2.2	26	90	6	89	35	3	0	60	1.14
14619304--14619433	57	2.3	58	75	10	133	27	4	2	65	1.24
14620295--14620329	17	2.1	17	94	0	61	20	0	2	77	0.90
14620339--14620417	16	5.3	16	72	24	57	20	2	0	77	0.89
14620351--14620434	10	8.0	10	75	18	73	20	2	0	77	0.88
14620355--14620434	13	6.5	12	78	14	76	20	2	0	77	0.88
14620367--14620434	17	4.0	17	78	16	70	20	2	0	76	0.92
14620347--14620431	39	2.2	38	83	8	109	20	2	0	77	0.88
14620350--14620420	5	14.4	5	73	24	62	18	2	0	78	0.86
14620351--14620424	34	2.2	34	85	7	98	18	2	0	78	0.87
14620442--14620841	60	6.7	58	81	8	430	47	6	12	34	1.66
14620446--14620841	119	3.3	119	88	3	541	47	5	12	34	1.66
14620423--14620841	177	2.4	175	83	8	485	47	5	12	35	1.65
14627455--14627494	14	2.9	14	88	3	55	45	0	5	50	1.23
14627461--14627494	13	2.5	13	90	4	50	44	0	5	50	1.26
14628538--14628581	22	2.0	23	82	13	56	59	2	2	36	1.23
14628835--14628876	21	2.0	21	86	9	59	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14629149--14629188	14	2.9	14	88	0	53	50	0	2	47	1.14
14629303--14629392	19	5.1	18	72	16	64	51	1	1	46	1.15
14629321--14629392	37	1.9	37	81	15	87	52	1	1	44	1.18
14629319--14629394	19	4.0	20	70	22	65	52	1	1	44	1.17
14629423--14629511	43	2.1	42	85	6	117	46	2	3	48	1.31
14629588--14629667	27	3.0	27	74	9	74	63	1	2	32	1.15
14629688--14629803	41	2.7	44	75	15	134	49	0	1	48	1.17
14630498--14630535	19	2.0	19	94	0	67	28	15	18	36	1.92
14632170--14632202	15	2.2	15	89	10	50	3	27	0	69	1.03
14633864--14633937	26	3.0	24	74	12	62	33	0	2	63	1.09
14634915--14634969	14	4.1	14	73	23	55	49	0	1	49	1.11
14637233--14637290	18	3.2	18	92	4	91	39	25	5	29	1.77
14637426--14637453	6	4.7	6	100	0	56	28	17	35	17	1.93
14637515--14637541	3	9.0	3	100	0	54	0	0	33	66	0.92
14642444--14642522	37	2.3	32	80	10	86	51	7	1	39	1.38
14655886--14655944	21	2.7	22	78	17	70	47	3	0	49	1.18
14658138--14658208	36	2.0	36	91	0	115	43	18	18	19	1.88
14661808--14661839	16	1.9	17	93	6	57	3	34	0	62	1.11
14664178--14664203	9	2.9	9	100	0	52	0	23	57	19	1.40
14664756--14664854	6	17.5	6	69	19	52	47	1	1	50	1.14
14665081--14665119	11	3.5	11	78	0	51	48	2	0	48	1.15
14665479--14665534	10	5.4	10	76	16	51	73	7	0	19	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14665479--14665534	11	5.3	11	82	6	53	73	7	0	19	1.06
14665479--14665534	21	2.7	20	78	10	58	73	7	0	19	1.06
14665530--14665582	9	5.6	9	76	12	52	58	7	1	32	1.37
14665499--14665583	10	8.6	10	73	11	77	61	9	1	28	1.35
14665605--14665656	26	2.0	26	84	3	68	55	0	5	38	1.24
14665621--14665679	27	2.2	26	82	8	66	54	3	5	37	1.39
14665671--14665731	17	3.4	18	73	11	54	62	1	1	34	1.15
14665800--14665851	20	2.8	18	77	11	59	57	1	3	36	1.28
14665779--14665896	38	3.2	36	73	13	105	55	1	4	38	1.30
14666425--14666468	19	2.2	20	88	4	63	65	0	2	31	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91