genome.fa.s201.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  28  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4918028--4918180	32	4.9	33	76	11	103	63	0	4	31	1.19
4918041--4918168	3	38.7	3	76	14	103	62	0	4	32	1.21
4918041--4918190	23	7.0	21	74	18	89	64	0	4	30	1.16
4918045--4918181	32	4.2	34	75	14	119	62	0	4	32	1.20
4918151--4918219	21	3.3	20	75	20	61	72	1	4	21	1.10
4918164--4918220	7	8.0	7	80	2	60	75	1	3	19	1.04
4921318--4921381	25	2.6	23	80	11	65	45	1	3	50	1.27
4922531--4922560	2	15.0	2	100	0	60	50	0	0	50	1.00
4923688--4923730	1	43.0	1	85	0	59	0	0	6	93	0.37
4923684--4923730	15	2.9	16	90	9	69	0	0	8	91	0.42
4924402--4924458	25	2.4	24	77	13	64	43	1	0	54	1.10
4925008--4925057	14	3.6	14	79	15	59	64	0	0	36	0.94
4925012--4925070	12	5.0	12	75	21	54	62	0	0	37	0.95
4928050--4928103	18	3.0	18	91	0	90	24	29	18	27	1.98
4932266--4932409	71	2.0	71	98	0	279	27	13	15	43	1.85
4933462--4933524	14	4.4	14	75	13	56	33	1	1	63	1.13
4933460--4933507	16	3.2	14	82	17	53	35	2	0	62	1.07
4933499--4933570	35	2.1	35	100	0	144	41	2	5	50	1.40
4935091--4935123	2	17.0	2	93	6	59	48	0	0	51	1.00
4935578--4935670	45	2.1	45	93	0	159	55	4	12	26	1.55
4938020--4938058	12	3.2	13	85	10	55	53	7	2	35	1.43
4938093--4938202	18	6.0	18	74	15	93	50	10	5	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4938093--4938202	55	2.0	54	81	13	127	50	10	5	33	1.61
4938323--4938384	24	2.6	24	85	7	90	54	6	3	35	1.42
4938348--4938391	19	2.3	19	88	4	61	56	6	4	31	1.46
4938351--4938397	19	2.5	19	77	16	53	57	6	4	31	1.43
4938413--4938603	32	5.9	32	67	19	101	55	12	3	28	1.53
4938450--4938519	20	3.3	20	77	13	70	57	8	4	30	1.48
4938475--4938518	23	2.0	22	86	4	61	56	9	4	29	1.50
4938656--4938716	31	2.0	30	84	9	79	57	8	4	29	1.49
4939308--4939342	12	2.8	13	91	4	54	68	8	0	22	1.16
4941586--4941681	6	16.0	6	82	7	106	19	3	0	77	0.91
4941574--4941666	18	5.2	18	83	12	95	15	5	0	79	0.90
4941815--4941858	21	2.0	22	86	4	63	20	4	6	68	1.31
4941869--4941893	13	1.9	13	100	0	50	12	0	0	88	0.53
4942219--4942269	19	2.7	19	93	0	93	21	9	27	41	1.84
4942776--4942853	11	6.8	11	80	11	86	15	5	1	78	0.99
4942776--4942853	17	4.6	16	78	16	77	15	5	1	78	0.99
4942870--4943579	59	12.0	59	82	8	802	43	8	12	35	1.73
4942870--4943579	119	6.0	117	84	7	818	43	8	12	35	1.73
4942870--4943579	296	2.4	297	91	3	1130	43	8	12	35	1.73
4950262--4950295	8	3.8	9	88	11	52	88	0	2	8	0.62
4950261--4950295	17	2.0	18	94	5	63	85	0	2	11	0.69
4950262--4950307	15	3.2	15	80	17	53	82	0	6	10	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4951306--4951520	42	5.1	41	83	5	225	26	16	21	35	1.94
4951529--4951561	11	3.0	11	91	8	50	90	6	0	3	0.52
4951726--4951852	6	21.2	6	79	9	71	22	3	0	73	1.05
4951742--4951819	3	26.7	3	79	10	90	25	2	0	71	0.98
4952892--4952986	5	18.6	5	73	16	63	15	4	3	76	1.06
4952906--4952986	6	13.5	6	71	19	62	14	3	2	79	0.98
4952906--4952986	17	4.9	16	78	15	76	14	3	2	79	0.98
4952911--4952991	36	2.2	39	84	13	116	14	4	2	77	1.04
4952913--4952986	25	3.1	24	80	12	73	14	2	2	79	0.95
4952914--4952987	31	2.4	31	84	2	96	14	4	2	78	1.01
4953003--4953571	59	9.7	57	84	7	676	44	7	13	35	1.71
4953003--4953571	117	4.8	114	85	6	642	44	7	13	35	1.71
4953481--4953572	27	3.3	27	65	21	71	39	6	17	36	1.76
4958539--4958844	99	3.0	100	83	6	375	44	8	8	37	1.66
4959491--4959530	21	2.0	20	85	14	55	15	0	10	75	1.05
4959986--4960037	17	2.9	18	80	8	54	28	25	3	42	1.72
4960604--4960642	19	2.1	19	95	0	69	33	33	5	28	1.79
4963961--4964005	19	2.4	18	88	3	63	77	2	8	11	1.07
4966744--4966785	17	2.4	18	84	4	59	38	16	14	30	1.89
4967070--4967341	121	2.3	121	82	7	306	47	15	19	17	1.83
4968400--4968432	10	3.3	10	88	12	50	0	6	3	90	0.52
4968396--4968432	17	2.2	17	90	9	58	0	8	2	89	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4968465--4968494	15	2.0	15	93	0	51	0	3	3	93	0.42
4968388--4968546	61	2.5	62	79	11	160	13	12	9	64	1.50
4972064--4972303	127	1.9	130	83	4	317	32	9	12	46	1.73
4972981--4973031	18	2.7	19	84	6	77	17	7	5	68	1.34
4973188--4973227	14	2.7	14	84	7	53	57	12	2	27	1.48
4975159--4975763	179	3.4	179	81	7	603	38	12	7	41	1.71
4976048--4976101	16	3.1	16	74	23	54	70	1	3	24	1.13
4976034--4976095	29	2.1	30	82	8	74	70	1	3	24	1.10
4977264--4977348	6	14.2	6	94	0	98	58	9	0	31	1.30
4977264--4977367	18	5.7	18	88	3	111	60	9	0	29	1.28
4980116--4980192	3	25.3	3	89	2	109	63	2	2	31	1.21
4980572--4980606	3	11.7	3	87	0	52	68	0	2	28	1.04
4980568--4980609	18	2.3	18	95	0	75	71	0	2	26	0.98
4980643--4980672	15	2.0	15	93	0	51	46	16	0	36	1.47
4980682--4980730	8	6.4	8	73	17	50	51	36	0	12	1.40
4980661--4980771	20	5.1	22	72	13	77	48	30	1	18	1.59
4980703--4980819	30	3.9	30	91	3	175	45	32	1	20	1.61
4980703--4980817	16	7.6	16	74	13	102	45	32	1	20	1.62
4980748--4980801	14	3.7	14	80	9	72	48	27	3	20	1.66
4980762--4980849	46	1.9	46	86	4	124	43	30	4	21	1.73
4988972--4989001	10	3.0	10	90	0	51	50	6	0	43	1.28
4988946--4989031	34	2.5	34	88	0	127	43	9	4	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4993885--4994401	117	4.4	116	82	11	520	32	14	7	45	1.72
4993884--4994408	181	3.0	175	82	9	570	32	13	7	45	1.73
4994479--4994535	11	5.0	11	80	14	62	84	3	1	10	0.82
4994852--4994897	19	2.3	20	85	3	67	26	19	32	21	1.97
4995373--4996007	42	15.5	41	87	7	916	36	21	18	23	1.95
4995373--4996007	123	5.2	123	92	3	1055	36	21	18	23	1.95
4997275--4997332	11	5.0	11	78	12	62	5	12	0	82	0.82
4997640--4997667	11	2.5	11	100	0	56	10	0	0	89	0.49
5001109--5001468	60	5.9	61	89	5	453	32	12	8	46	1.70
5001097--5001490	189	2.1	184	85	8	528	32	11	8	48	1.68
5001289--5001514	125	1.8	124	80	7	269	38	8	6	45	1.62
5002479--5002656	65	2.7	64	78	17	156	65	4	2	26	1.25
5006657--5006734	37	2.1	38	83	7	97	35	10	6	47	1.63
5015058--5015098	14	2.9	14	88	0	64	2	68	0	29	1.03
5018837--5018893	20	2.8	21	87	12	75	19	1	7	71	1.17
5018887--5018927	19	2.2	18	86	4	55	17	2	9	70	1.25
5019275--5019311	20	1.9	19	89	10	58	37	13	10	37	1.80
5020012--5020080	26	2.6	28	77	13	74	44	8	8	37	1.66
5020012--5020076	27	2.4	27	80	7	71	47	6	9	36	1.60
5023997--5024035	3	13.3	3	94	5	71	66	0	0	33	0.92
5024001--5024036	17	2.1	17	100	0	72	63	0	0	36	0.94
5023994--5024035	20	2.2	19	95	4	75	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024037--5024089	3	17.7	3	100	0	106	32	33	0	33	1.58
5030564--5030606	22	1.9	23	85	4	61	65	0	0	34	0.93
5032332--5032365	2	17.0	2	100	0	68	50	0	0	50	1.00
5037631--5037695	32	2.0	32	100	0	130	36	10	12	40	1.78
5037848--5037943	42	2.3	42	85	1	122	43	8	14	33	1.75
5039823--5039896	35	2.1	35	84	2	94	55	9	4	31	1.51
5057295--5057349	9	5.8	9	80	16	51	85	1	5	7	0.80
5057295--5057348	24	2.3	24	87	3	74	85	1	5	7	0.81
5057296--5057352	15	3.7	15	79	11	62	84	1	7	7	0.85
5058461--5058720	41	6.2	41	81	4	286	26	15	16	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91