genome.fa.s201.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  46  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7486277--7486344	32	2.1	32	88	0	100	32	7	11	48	1.67
7487090--7487121	15	2.1	15	94	0	55	65	0	3	31	1.08
7487799--7488781	180	5.5	180	75	7	735	41	9	8	39	1.69
7489350--7489393	17	2.6	17	83	16	56	45	2	0	52	1.13
7489360--7489419	21	2.7	21	78	17	59	46	1	1	50	1.21
7489757--7489791	15	2.3	15	90	0	52	54	0	0	45	0.99
7490089--7490144	27	2.1	27	83	12	71	37	0	5	57	1.22
7490260--7490300	12	3.3	12	83	6	55	43	0	2	53	1.13
7491721--7491766	15	2.9	16	75	18	60	45	0	2	52	1.13
7491721--7491768	14	3.2	14	77	11	51	45	0	2	52	1.12
7492318--7492362	22	2.1	21	83	4	54	51	8	2	37	1.46
7492409--7492441	16	2.1	15	94	5	57	57	0	0	42	0.98
7494024--7494084	29	2.2	28	82	11	72	50	0	3	45	1.17
7494190--7494259	25	2.7	25	82	10	70	48	2	2	45	1.32
7494243--7494281	20	1.9	20	89	5	60	48	2	0	48	1.15
7494431--7494530	41	2.4	44	77	17	115	44	0	3	53	1.16
7494666--7494692	13	2.1	13	100	0	54	51	0	0	48	1.00
7494876--7494910	16	2.1	18	89	10	56	45	0	5	48	1.26
7494949--7494996	15	3.0	16	79	14	55	45	2	0	52	1.12
7496844--7496926	35	2.5	34	78	7	98	39	10	10	38	1.75
7496700--7497084	208	1.8	208	82	10	496	42	9	7	40	1.66
7497365--7497419	15	3.2	19	70	21	57	52	3	1	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7497363--7497414	18	3.1	17	78	15	54	48	3	1	46	1.31
7497485--7497565	43	1.9	42	85	7	110	48	3	2	45	1.33
7497622--7497718	47	2.0	47	80	5	106	54	1	5	39	1.29
7497812--7497879	2	34.0	2	76	5	66	45	4	1	48	1.31
7497812--7497859	21	2.3	21	88	0	69	50	6	2	41	1.39
7498837--7498871	12	2.8	13	86	4	54	40	0	2	57	1.14
7499888--7499939	18	2.8	18	80	13	54	44	1	3	50	1.31
7499961--7500002	15	2.9	15	78	3	50	54	0	2	42	1.13
7500063--7500108	22	2.1	22	88	8	67	45	2	0	52	1.13
7500101--7500139	19	2.0	20	85	14	55	56	2	5	35	1.35
7501734--7501767	13	2.5	13	90	4	50	50	0	2	47	1.16
7502774--7502819	18	2.6	18	82	0	56	45	2	2	50	1.26
7502813--7502837	13	1.9	13	100	0	50	56	4	0	40	1.18
7502806--7502864	25	2.4	25	73	18	61	55	1	1	40	1.20
7503047--7503127	24	3.3	24	79	6	74	45	2	1	50	1.22
7503812--7503863	23	2.3	22	83	3	68	38	0	5	55	1.24
7504682--7504733	22	2.3	23	80	3	61	53	1	0	44	1.11
7504692--7504772	12	7.2	12	73	14	75	53	0	0	46	1.00
7504690--7504744	23	2.4	22	76	11	56	54	0	0	45	0.99
7505788--7505820	17	1.9	17	88	11	50	39	0	0	60	0.97
7506197--7506295	9	10.8	9	68	26	50	49	1	3	46	1.24
7506198--7506295	24	4.0	23	77	16	99	48	1	3	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7507065--7507089	13	1.9	13	100	0	50	44	0	0	56	0.99
7507079--7507151	21	3.5	20	78	14	69	46	0	4	49	1.21
7507940--7507982	20	2.2	20	83	8	52	53	0	0	46	1.00
7508047--7508151	15	7.3	15	66	16	60	54	0	1	43	1.11
7508038--7508114	28	2.7	27	77	18	77	49	0	2	48	1.15
7508176--7508217	13	3.1	14	83	13	52	42	0	0	57	0.99
7508192--7508248	20	2.8	20	79	7	71	42	0	0	57	0.98
7508200--7508240	21	1.9	21	85	5	55	41	0	0	58	0.98
7508565--7508619	19	2.9	19	78	2	58	40	10	9	40	1.72
7508842--7508948	41	2.6	38	73	18	90	43	1	3	50	1.30
7509512--7509559	16	2.9	17	76	17	55	43	0	4	52	1.20
7509705--7510096	181	2.2	181	86	2	536	37	7	9	45	1.66
7510107--7510178	28	2.6	27	80	12	74	45	1	0	52	1.09
7510107--7510188	14	5.9	14	76	9	62	47	1	0	51	1.08
7510640--7510697	25	2.3	25	96	0	107	24	13	5	56	1.57
7511436--7511485	22	2.3	22	86	6	66	50	0	2	48	1.12
7511438--7511499	22	2.7	23	80	14	65	51	0	1	46	1.10
7511907--7511956	22	2.3	22	86	6	66	48	2	0	50	1.12
7511910--7511953	18	2.6	17	82	13	56	45	2	0	52	1.13
7511924--7511973	22	2.3	22	82	6	57	44	4	2	50	1.32
7512117--7512142	11	2.4	11	100	0	52	38	7	7	46	1.61
7512376--7512930	181	3.1	178	78	8	522	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7512772--7513044	145	1.9	144	86	6	392	43	10	6	39	1.65
7513835--7514396	180	3.1	179	78	5	551	40	9	9	40	1.71
7513835--7514367	182	3.0	182	79	4	501	39	10	9	40	1.72
7514451--7514492	18	2.2	20	80	16	54	52	2	14	30	1.54
7515413--7515459	16	2.9	16	81	12	60	51	2	0	46	1.13
7515404--7515472	25	2.7	26	82	8	72	46	1	1	50	1.19
7515789--7515827	19	2.1	18	90	4	60	43	0	0	56	0.99
7515792--7515845	19	2.7	19	77	13	56	46	1	1	50	1.23
7516437--7516493	19	3.1	19	89	2	80	42	1	1	54	1.21
7516669--7517271	326	1.8	328	80	8	717	38	7	10	43	1.69
7516998--7518383	542	2.6	539	81	5	1454	40	8	9	41	1.68
7516998--7518723	181	9.6	180	78	5	1366	40	8	9	41	1.68
7518900--7518924	12	2.1	12	100	0	50	60	0	0	40	0.97
7518913--7518964	21	2.5	20	81	12	52	48	3	0	48	1.20
7520114--7521747	181	9.0	181	76	8	1244	41	10	8	40	1.69
7521059--7521106	23	2.1	23	96	0	87	31	14	12	41	1.83
7521891--7521944	20	2.6	22	82	8	69	46	3	0	50	1.19
7522051--7522121	29	2.4	29	78	19	76	43	5	0	50	1.25
7522101--7522173	31	2.4	32	82	11	82	38	2	2	56	1.28
7522528--7523006	181	2.6	179	78	4	424	40	7	7	44	1.61
7523266--7523305	18	2.4	17	83	8	55	40	12	5	42	1.64
7523284--7524180	181	5.0	179	77	9	770	42	9	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7523811--7523843	18	1.9	17	88	11	50	39	6	6	48	1.53
7523284--7524180	362	2.5	353	81	5	966	42	9	7	40	1.66
7524392--7524424	18	1.9	17	88	11	50	39	6	6	48	1.53
7522506--7525113	942	2.8	926	78	6	2425	41	9	8	40	1.66
7524180--7525663	180	8.2	179	77	7	1222	41	9	8	40	1.68
7525648--7526877	183	6.9	179	75	8	989	41	10	9	38	1.72
7525648--7534128	181	47.6	179	72	10	4524	41	10	8	39	1.70
7526752--7527051	157	1.9	161	83	6	396	43	10	9	37	1.71
7526889--7548968	722	30.9	710	69	14	3859	41	9	8	39	1.68
7532734--7534128	178	7.8	169	71	12	674	41	10	8	39	1.70
7525648--7548967	901	25.9	887	69	13	5282	41	9	8	39	1.69
7528679--7534128	357	15.2	355	73	10	1970	41	10	8	39	1.69
7535030--7536595	781	2.0	781	97	0	2925	41	8	10	39	1.70
7536266--7549025	181	70.6	179	70	11	4645	41	9	8	40	1.68
7536266--7548995	541	23.5	536	71	12	5077	41	9	8	40	1.68
7540639--7541413	178	4.3	177	78	8	654	41	9	8	41	1.67
7541414--7541476	24	2.5	26	87	10	103	50	9	4	34	1.56
7542548--7542865	168	1.9	168	83	5	419	43	10	6	40	1.64
7543608--7543640	18	1.9	17	88	11	50	39	6	6	48	1.53
7542144--7548975	358	19.1	355	75	8	4236	41	9	8	40	1.68
7549298--7549332	18	2.0	18	88	5	54	14	11	2	71	1.25
7549462--7549503	19	2.2	19	86	0	57	78	4	4	11	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7549830--7549856	13	2.1	13	100	0	54	70	14	0	14	1.17
7549866--7549924	10	5.8	10	84	4	64	66	15	3	15	1.39
7549876--7549921	21	2.2	21	88	0	65	71	13	2	13	1.23
7549876--7549938	21	3.0	22	79	11	60	61	15	3	19	1.46
7550345--7550448	3	35.3	3	79	11	108	65	0	4	29	1.13
7550361--7550450	24	3.9	23	88	7	121	62	0	6	31	1.21
7550509--7550573	26	2.5	26	94	0	112	35	18	23	23	1.96
7550509--7550586	26	3.0	26	90	0	102	34	20	23	21	1.97
7550919--7551249	89	3.7	86	82	4	351	42	15	21	19	1.88
7552084--7552190	47	2.2	49	80	6	121	14	18	16	49	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91