genome.fa.s201.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  75  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12480384--12480435	14	3.7	14	72	10	52	55	28	0	15	1.40
12483460--12483510	20	2.6	20	84	9	61	29	29	17	23	1.97
12483833--12483882	13	4.2	12	83	14	52	8	2	2	88	0.68
12483837--12483885	16	3.1	15	82	8	53	10	2	2	85	0.76
12483964--12484368	57	6.7	57	81	11	461	45	7	13	33	1.72
12483962--12484368	120	3.4	119	85	6	516	45	7	13	33	1.71
12483964--12484382	187	2.3	180	84	8	532	46	7	13	33	1.71
12487030--12487079	20	2.5	20	86	0	64	36	0	0	64	0.94
12488157--12488429	58	4.7	58	87	4	410	32	13	8	45	1.74
12488157--12488430	115	2.4	116	93	3	473	32	13	8	45	1.74
12488453--12488607	17	9.6	15	66	20	57	75	5	3	16	1.11
12488565--12488604	21	1.9	21	84	0	53	82	7	0	10	0.84
12488925--12488971	19	2.4	20	85	3	60	29	19	27	23	1.98
12489681--12489725	3	15.0	3	100	0	90	66	0	0	33	0.92
12489650--12489739	12	6.7	14	79	19	63	67	2	2	27	1.14
12490261--12490303	20	2.2	20	86	0	59	46	0	2	51	1.13
12490612--12490646	18	2.0	18	88	5	54	42	2	0	54	1.15
12492594--12492634	3	13.7	3	89	0	64	60	0	0	39	0.96
12493875--12493899	8	3.1	8	100	0	50	24	0	0	76	0.80
12494011--12494043	3	11.0	3	100	0	66	66	0	0	33	0.92
12494165--12494326	13	11.4	13	68	16	74	46	29	0	24	1.52
12494281--12494442	88	1.8	88	86	2	236	50	28	0	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12494243--12494450	88	2.4	88	79	5	235	48	30	0	20	1.54
12494167--12494485	28	11.1	28	70	12	141	49	29	0	21	1.52
12494339--12494478	14	9.7	14	67	11	68	53	27	0	19	1.45
12494549--12494600	25	2.1	24	85	3	68	51	25	1	21	1.57
12498865--12498898	11	2.8	12	86	13	52	26	0	0	73	0.83
12501492--12501562	34	2.1	35	91	2	117	33	12	4	49	1.60
12502268--12502322	22	2.5	22	79	5	58	32	1	1	63	1.15
12504908--12504944	17	2.2	17	90	0	56	32	8	8	51	1.61
12508895--12508954	29	2.0	29	83	6	75	45	1	6	46	1.39
12509068--12509137	29	2.3	31	85	7	99	47	5	0	47	1.26
12509084--12509144	29	2.1	28	82	11	70	45	4	0	49	1.23
12511353--12511383	3	10.3	3	92	0	53	67	29	0	3	1.06
12517035--12517077	2	22.0	2	85	4	61	48	4	0	46	1.22
12519796--12520089	145	2.0	147	89	1	448	50	6	6	37	1.52
12520340--12520368	14	2.0	15	93	6	51	34	0	6	58	1.25
12521289--12521375	32	2.6	33	83	5	113	48	5	4	41	1.48
12521936--12521964	15	1.9	15	100	0	58	27	20	20	31	1.98
12522505--12522532	2	14.0	2	100	0	56	50	0	0	50	1.00
12522532--12522556	2	12.5	2	100	0	50	52	0	48	0	1.00
12525093--12525131	3	13.0	3	88	0	60	66	5	0	28	1.12
12525886--12525980	30	3.2	30	79	13	81	46	4	12	36	1.61
12525896--12525982	30	2.9	30	81	11	83	48	4	9	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12526033--12526078	23	2.0	23	83	8	58	34	4	4	56	1.39
12531011--12531053	22	2.0	22	100	0	86	44	18	9	27	1.80
12539592--12539616	10	2.5	10	100	0	50	16	32	0	52	1.44
12539619--12539670	27	2.0	27	88	3	79	38	1	3	55	1.29
12541656--12541852	98	2.0	99	91	1	324	27	10	18	43	1.83
12558889--12558924	17	2.1	17	100	0	72	41	0	5	52	1.24
12558892--12558930	17	2.2	17	90	4	60	41	0	7	51	1.31
12559771--12559872	8	12.4	8	76	6	51	38	3	12	45	1.61
12559791--12559840	12	4.2	12	82	2	57	42	6	8	44	1.58
12559823--12559874	4	13.0	4	95	0	86	28	0	21	50	1.49
12561411--12561466	28	2.0	28	92	0	94	28	14	14	42	1.84
12561795--12561824	14	2.1	15	93	6	53	20	13	13	53	1.72
12565710--12565770	29	2.0	29	87	9	86	47	6	27	18	1.73
12566187--12566217	11	2.8	11	95	0	53	48	9	9	32	1.69
12573705--12573769	16	3.8	16	72	20	51	55	0	1	43	1.09
12573659--12573739	29	2.6	32	77	16	89	48	0	1	50	1.08
12574277--12574311	18	1.9	18	88	0	52	60	0	0	40	0.97
12574306--12574344	16	2.4	16	91	0	60	64	2	0	33	1.08
12574275--12574335	28	2.4	25	74	15	61	60	0	0	39	0.97
12575625--12575685	28	2.2	28	90	0	95	65	0	3	31	1.09
12575632--12575681	13	3.7	13	79	10	55	68	0	4	28	1.08
12575631--12575700	13	4.9	13	73	19	50	70	0	2	27	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12575638--12575720	22	3.7	22	72	16	71	63	0	3	32	1.11
12584553--12584623	22	3.2	22	64	25	58	40	7	16	35	1.76
12584533--12584624	45	2.0	45	97	0	175	43	8	16	31	1.78
12584364--12584783	214	2.0	214	90	0	671	41	13	14	30	1.84
12584781--12584819	15	2.5	15	88	12	53	66	7	15	10	1.43
12591194--12591394	58	3.5	58	84	6	293	35	17	7	39	1.78
12591492--12591536	9	4.9	9	82	15	56	75	0	4	20	0.97
12591501--12591538	19	2.1	18	90	9	60	78	0	2	18	0.86
12592390--12592450	31	1.9	32	86	3	88	72	1	3	22	1.09
12592421--12592503	21	3.9	20	73	16	60	65	2	4	27	1.26
12592397--12592471	31	2.4	29	77	12	78	69	1	4	25	1.14
12592431--12592482	22	2.5	21	84	12	63	65	1	5	26	1.26
12592566--12592647	6	13.2	6	72	16	51	74	1	2	21	1.01
12599975--12600038	32	2.0	32	93	0	110	40	9	7	42	1.66
12601072--12601130	23	2.5	23	86	10	75	47	0	3	49	1.18
12608727--12608831	22	4.9	22	84	3	124	51	4	6	37	1.49
12608727--12609062	43	8.0	43	66	16	134	51	5	8	34	1.56
12608947--12609062	22	5.3	21	79	10	108	50	5	9	34	1.57
12608944--12609063	44	2.8	44	82	6	163	50	5	10	34	1.59
12609895--12610250	22	15.9	22	71	13	108	46	6	9	38	1.62
12609790--12610250	44	10.3	43	72	14	195	47	7	9	36	1.63
12609793--12610250	66	6.8	65	71	15	222	46	7	9	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12610046--12610198	22	7.0	21	80	7	119	47	7	5	39	1.55
12609906--12610185	140	2.0	140	80	5	316	46	6	7	39	1.58
12610068--12610230	22	7.5	22	79	8	122	47	8	7	36	1.62
12610489--12610807	22	14.8	21	70	12	91	44	9	9	36	1.69
12610489--12610845	44	8.2	44	66	14	150	45	8	9	36	1.68
12610597--12610648	20	2.6	19	80	14	61	50	7	9	32	1.64
12610715--12610860	11	13.3	11	67	8	64	48	8	5	37	1.56
12610690--12610829	22	6.4	22	81	8	124	46	10	5	37	1.61
12610693--12610866	66	2.6	65	80	7	181	47	9	5	37	1.61
12610725--12610866	44	3.2	44	79	0	149	48	9	4	37	1.57
12610715--12610864	22	6.8	22	82	3	133	48	8	5	38	1.57
12611045--12611121	22	3.5	22	74	8	68	44	7	11	36	1.70
12611110--12611152	22	2.0	22	85	0	59	44	2	6	46	1.43
12612697--12612726	16	1.9	16	93	6	53	83	0	3	13	0.77
12616480--12616533	26	2.1	26	83	13	67	46	9	1	42	1.46
12616931--12616975	13	3.3	13	84	6	54	0	33	0	66	0.92
12624493--12624546	24	2.2	23	81	18	65	25	5	3	64	1.32
12624597--12624622	3	8.7	3	100	0	52	30	0	0	69	0.89
12625239--12625283	20	2.2	20	84	0	54	33	28	22	15	1.95
12625654--12625678	13	1.9	13	100	0	50	12	0	8	80	0.92
12625632--12625663	1	32.0	1	100	0	64	0	0	0	100	0.00
12625701--12626158	152	3.0	152	91	5	715	29	14	17	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12629382--12629406	1	25.0	1	100	0	50	100	0	0	0	0.00
12629804--12629840	10	3.7	10	88	0	56	83	0	13	2	0.74
12629780--12629848	19	3.7	20	75	11	74	75	0	17	7	1.02
12631071--12631605	41	13.0	41	88	5	751	23	17	23	36	1.95
12631071--12631605	124	4.3	122	86	7	708	23	17	23	36	1.95
12631612--12631730	1	119.0	1	75	0	85	85	6	0	6	0.77
12631617--12631724	51	2.1	52	83	11	143	85	7	0	6	0.79
12631613--12631731	14	7.9	14	80	15	107	84	6	0	7	0.80
12631611--12631731	23	5.6	22	78	14	112	84	7	0	7	0.82
12631900--12631953	24	2.2	23	81	18	65	25	5	3	64	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91