genome.fa.s201.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  62  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10371865--10372227	128	2.9	124	81	11	416	44	21	11	23	1.83
10372477--10372598	44	2.8	45	77	13	128	36	17	12	34	1.87
10372605--10372918	79	4.0	79	87	3	384	33	17	12	36	1.87
10372804--10372843	21	1.9	21	100	0	80	35	15	10	40	1.80
10372969--10373022	20	2.7	20	100	0	108	33	18	16	31	1.93
10374077--10374163	7	12.4	7	79	16	76	2	13	0	83	0.73
10374105--10374165	1	61.0	1	76	0	59	0	11	0	88	0.51
10374077--10374164	8	11.4	8	82	8	78	2	13	0	84	0.73
10374077--10374165	9	9.3	9	81	16	108	2	13	0	84	0.72
10374520--10374559	20	2.0	20	85	0	53	7	15	0	77	0.98
10378150--10378221	36	2.0	36	91	0	117	33	12	2	51	1.54
10378291--10378334	3	14.7	3	100	0	88	68	0	0	31	0.90
10379557--10379615	22	2.7	22	73	19	61	50	8	5	35	1.55
10379623--10379671	22	2.2	22	77	0	53	48	12	12	26	1.75
10379820--10379884	22	3.0	22	79	0	76	44	4	10	40	1.60
10379799--10379884	44	2.0	44	81	4	102	48	5	10	34	1.61
10379949--10380264	22	14.5	22	70	10	157	50	5	8	35	1.56
10379961--10380098	65	2.1	66	81	4	154	51	5	9	33	1.58
10379949--10380302	152	2.3	152	88	2	505	49	5	8	36	1.57
10380321--10380378	21	2.7	21	86	2	80	62	0	5	32	1.18
10380327--10380378	21	2.4	22	90	9	81	65	0	5	28	1.16
10379983--10380380	152	2.6	152	83	6	423	51	4	8	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10380404--10380489	22	3.9	22	73	0	73	44	8	10	37	1.69
10380492--10380571	22	3.6	22	68	6	63	43	12	5	38	1.64
10380499--10380583	44	1.9	44	82	0	107	43	11	8	36	1.71
10380555--10380690	22	6.2	22	74	8	80	45	9	8	36	1.66
10380652--10380705	22	2.5	22	84	0	63	48	5	7	38	1.55
10381005--10381064	11	5.5	11	72	7	50	55	5	5	35	1.44
10381336--10381457	22	5.5	22	75	11	88	49	7	8	35	1.61
10381336--10381455	44	2.7	44	82	7	120	49	6	8	35	1.59
10381384--10381466	22	3.8	22	77	0	85	43	7	9	39	1.65
10381318--10381470	22	7.0	22	72	8	62	50	6	8	34	1.59
10381562--10381664	22	4.8	21	77	9	93	40	10	11	36	1.76
10382689--10382746	29	1.9	31	89	6	93	24	5	13	56	1.57
10382694--10382755	29	2.1	29	81	3	70	27	4	14	53	1.61
10383922--10384004	41	2.0	41	85	2	112	37	15	13	33	1.86
10384207--10384251	18	2.5	18	100	0	90	26	17	11	44	1.82
10387420--10387515	27	3.3	27	62	16	66	37	12	7	42	1.71
10387418--10387695	59	4.7	58	91	4	407	34	12	8	43	1.73
10387675--10387714	18	2.2	18	100	0	80	30	20	0	50	1.49
10387748--10387840	6	16.7	6	75	12	67	77	1	4	17	0.99
10387755--10387890	10	12.7	10	71	18	71	73	2	3	19	1.11
10388831--10388981	53	2.9	51	76	13	155	76	1	6	15	1.06
10388882--10388962	6	15.4	5	74	16	58	76	2	1	19	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10388831--10388961	44	3.0	43	80	13	128	76	1	4	17	1.03
10388836--10388980	50	2.9	49	81	13	154	75	1	6	15	1.08
10388831--10388962	34	3.8	35	73	14	112	75	1	4	18	1.04
10388831--10388978	48	2.9	50	80	14	146	75	1	6	16	1.08
10393731--10393819	44	2.0	45	91	2	144	29	6	0	64	1.19
10394988--10395073	45	1.9	45	92	0	145	36	9	12	41	1.75
10395313--10395347	17	1.9	19	88	11	56	31	14	11	42	1.81
10401574--10401693	17	6.9	17	75	13	93	68	1	8	21	1.25
10401574--10401616	6	7.3	6	81	5	52	74	2	4	18	1.10
10403159--10403257	45	2.2	45	96	0	180	38	9	12	40	1.74
10403558--10403583	13	2.0	13	100	0	52	15	7	0	76	0.99
10404003--10404048	2	23.0	2	100	0	92	50	0	0	50	1.00
10405362--10405395	17	2.0	17	88	11	52	44	5	2	47	1.42
10408963--10408995	14	2.3	15	89	5	50	60	0	0	39	0.97
10410367--10410420	23	2.4	22	76	14	56	55	11	0	33	1.35
10411089--10411142	3	18.0	3	96	0	99	33	0	1	64	1.04
10413410--10413686	146	1.8	149	82	11	357	39	9	5	46	1.59
10414651--10414734	40	2.2	38	83	10	102	25	16	4	53	1.62
10416108--10416223	22	5.3	21	77	12	101	54	4	6	35	1.45
10416213--10416289	37	2.1	36	81	11	86	61	6	6	25	1.45
10416241--10416288	22	2.2	22	82	14	55	64	8	4	22	1.38
10416336--10416475	22	6.4	22	81	6	167	47	5	11	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10416391--10416468	11	7.1	11	76	11	79	47	6	10	35	1.63
10417012--10417085	22	3.4	22	79	7	78	52	8	5	33	1.54
10417098--10417159	22	2.8	22	85	0	70	45	4	14	35	1.66
10417325--10417400	22	3.5	22	76	7	82	47	9	10	32	1.70
10417325--10417410	44	2.0	44	83	0	109	47	9	10	32	1.70
10417396--10417467	22	3.3	22	86	0	81	41	2	8	47	1.48
10417407--10417471	11	5.9	11	74	0	58	40	1	6	52	1.36
10417405--10417469	22	3.0	22	88	4	87	40	1	7	50	1.40
10417472--10417596	22	5.7	22	85	3	162	48	8	4	39	1.54
10417514--10417603	11	8.2	11	72	14	60	50	6	5	37	1.52
10417472--10417603	66	2.0	66	89	5	205	48	7	5	38	1.54
10417476--10417619	66	2.2	66	86	5	193	46	8	5	39	1.57
10421588--10421617	2	15.0	2	92	0	51	46	0	0	53	1.00
10422352--10422450	45	2.2	45	96	0	180	40	12	9	38	1.74
10423890--10423979	45	2.0	45	95	0	162	63	0	6	30	1.20
10427184--10427339	52	3.0	52	87	0	206	41	8	23	26	1.83
10427915--10427968	25	2.2	25	82	0	63	33	5	33	27	1.80
10428164--10428205	11	3.8	11	87	0	66	19	0	30	50	1.48
10428163--10428205	22	2.0	22	95	0	77	20	0	30	48	1.50
10428230--10428386	52	3.0	52	88	1	217	41	8	24	26	1.83
10429257--10429413	52	3.0	52	87	1	199	39	9	25	25	1.86
10430508--10430542	14	2.5	14	85	0	52	14	11	0	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431482--10431516	18	1.9	18	94	0	61	20	5	25	48	1.71
10436288--10436356	21	3.3	21	76	13	70	36	8	7	47	1.62
10436763--10436804	22	1.9	22	90	0	66	40	7	11	40	1.69
10436935--10437076	44	3.2	44	77	6	119	35	11	5	47	1.63
10437114--10437198	44	2.0	43	85	2	116	40	4	4	50	1.44
10436950--10437380	22	19.5	22	68	15	99	36	8	5	49	1.57
10437696--10437766	22	3.2	22	86	4	97	42	8	4	45	1.54
10437984--10438434	22	20.8	22	69	7	152	35	8	4	50	1.53
10437895--10438010	45	2.7	44	76	6	121	39	9	6	44	1.61
10438083--10438434	151	2.3	150	87	2	481	36	8	5	49	1.56
10438221--10438333	43	2.6	43	78	9	122	37	6	6	50	1.53
10438361--10438443	22	3.8	22	79	3	78	38	9	2	49	1.49
10438684--10438757	22	3.4	22	80	0	76	35	13	6	44	1.70
10438765--10438817	21	2.5	23	76	17	60	35	5	9	49	1.59
10440059--10440104	3	14.7	3	91	8	74	32	0	0	67	0.91
10440059--10440104	19	2.4	19	96	0	83	32	0	0	67	0.91
10440055--10440105	16	3.4	16	89	10	81	31	0	0	68	0.90
10440178--10440248	36	2.0	36	91	2	117	49	4	12	33	1.60
10442991--10443435	59	7.9	57	83	13	513	34	11	7	46	1.68
10442991--10443447	115	4.1	114	85	12	573	34	10	7	47	1.67
10443510--10443572	8	7.9	8	81	13	51	84	3	1	11	0.81
10443987--10444056	31	2.2	32	79	20	78	25	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10444421--10444531	21	5.2	21	75	17	88	74	2	1	20	1.03
10444442--10444525	20	4.4	18	79	13	89	77	2	2	17	0.99
10444803--10444903	1	101.0	1	76	0	85	9	0	2	87	0.65
10444802--10444903	13	7.8	13	77	14	95	10	0	2	86	0.68
10444910--10445355	83	5.4	83	91	2	638	37	23	16	22	1.93
10444910--10445361	41	11.0	41	88	6	594	37	23	16	23	1.93
10446599--10446646	7	7.1	7	86	11	57	8	12	0	79	0.94
10446581--10446643	33	1.9	33	83	0	81	7	11	3	77	1.08
10446606--10446643	18	2.1	19	90	5	60	5	10	0	84	0.77
10450425--10450988	58	9.7	57	92	5	911	34	13	7	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91