genome.fa.s201.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  18  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3126537--3126570	14	2.3	15	90	5	52	2	0	44	52	1.16
3126506--3126619	51	2.3	50	81	7	133	14	0	34	50	1.43
3126563--3126652	14	6.1	14	74	14	65	17	1	33	47	1.55
3126535--3126606	35	2.0	35	83	2	90	11	0	37	51	1.38
3126580--3126670	16	5.9	16	72	10	82	18	1	31	48	1.56
3126563--3126671	31	3.6	30	77	10	107	18	0	33	46	1.55
3128200--3128228	3	9.7	3	100	0	58	34	0	0	65	0.93
3128772--3128815	22	2.0	22	86	0	61	36	15	18	29	1.92
3128478--3129002	110	4.8	110	80	3	459	42	17	17	23	1.89
3128917--3129189	88	3.1	88	81	2	323	39	16	20	23	1.92
3129321--3129531	107	2.0	107	93	0	359	37	16	13	32	1.88
3131319--3131356	17	2.2	17	86	9	51	5	2	5	86	0.76
3131319--3131357	19	2.2	18	90	9	62	5	2	5	87	0.75
3132000--3132571	59	9.6	57	85	11	753	34	12	8	44	1.72
3132000--3132571	180	3.2	176	89	8	824	34	12	8	44	1.72
3132620--3132644	10	2.5	10	100	0	50	84	0	0	16	0.63
3132600--3132642	14	2.8	15	86	10	52	76	0	4	18	0.95
3133234--3133291	25	2.4	25	85	8	75	46	17	3	32	1.65
3133654--3133687	17	1.9	18	88	5	52	79	2	2	14	0.97
3133715--3133819	16	6.6	16	69	20	60	64	7	0	27	1.20
3133664--3133829	73	2.3	74	76	14	182	65	6	1	27	1.26
3133683--3133810	35	3.6	34	73	19	95	62	6	0	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3138884--3138936	21	2.7	21	80	8	58	71	1	1	24	1.06
3140108--3140138	16	1.9	16	93	0	53	19	0	35	45	1.51
3140147--3140305	16	10.3	15	77	12	101	20	1	27	50	1.59
3140147--3140305	32	5.1	31	80	7	139	20	1	27	50	1.59
3141876--3141925	3	16.7	3	95	0	91	30	0	2	68	1.01
3142742--3142808	25	2.7	25	88	4	91	17	37	13	31	1.89
3142743--3142817	25	3.0	24	82	7	80	18	40	12	29	1.87
3143336--3143438	52	2.0	52	90	3	163	27	19	8	44	1.80
3149252--3149278	12	2.2	12	100	0	54	48	7	0	44	1.31
3149468--3149498	2	15.5	2	100	0	62	48	0	0	51	1.00
3149689--3149722	17	1.9	18	88	5	52	38	8	0	52	1.33
3164508--3164572	34	1.9	34	90	0	103	32	6	13	47	1.68
3165020--3165114	47	2.0	47	91	0	154	30	14	10	44	1.79
3171465--3171489	11	2.3	11	100	0	50	36	0	0	64	0.94
3171950--3171985	2	18.0	2	100	0	72	50	0	0	50	1.00
3173665--3173746	7	10.7	7	79	18	60	75	0	13	10	1.04
3173672--3173696	12	2.1	12	100	0	50	84	0	8	8	0.79
3173688--3173719	11	3.1	11	86	13	50	68	0	15	15	1.21
3173664--3173747	8	10.8	8	76	21	81	76	0	13	10	1.03
3174748--3174855	33	3.0	33	74	19	117	22	18	22	37	1.95
3174781--3174951	41	4.1	42	87	6	222	23	18	22	34	1.96
3175179--3175242	28	2.2	28	78	10	67	29	4	1	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3175235--3175277	15	2.6	16	82	10	52	6	4	2	86	0.79
3175871--3175908	19	2.0	19	94	0	67	42	23	15	18	1.89
3176311--3176395	5	17.6	5	69	24	58	15	4	2	77	1.03
3176304--3176396	30	2.9	31	76	14	91	15	7	2	75	1.12
3176411--3176727	59	5.4	58	84	2	418	46	6	14	33	1.69
3176411--3176728	119	2.7	118	90	3	498	46	6	14	33	1.69
3183994--3184055	31	2.0	31	83	0	79	33	20	14	30	1.93
3186234--3186265	12	2.7	12	95	0	55	37	6	3	53	1.42
3191745--3193981	748	3.0	751	89	2	3329	30	17	12	39	1.86
3197983--3198030	24	2.0	24	84	11	64	70	6	0	22	1.09
3198000--3198042	22	2.1	21	84	16	56	67	4	0	27	1.10
3198946--3198976	14	2.2	14	94	0	53	87	6	3	3	0.75
3199000--3199031	3	10.7	3	93	0	55	62	0	3	34	1.11
3199411--3199436	11	2.4	11	100	0	52	7	23	0	69	1.14
3211902--3211942	21	2.0	21	85	0	55	51	7	12	29	1.66
3212979--3213166	102	1.8	102	96	0	349	28	20	9	41	1.83
3233517--3233653	10	13.5	10	70	14	77	58	7	2	32	1.38
3233597--3233653	18	3.0	19	78	16	64	59	10	1	28	1.40
3233708--3233753	20	2.3	20	85	3	58	45	8	2	43	1.47
3233808--3233858	18	2.9	17	80	8	57	60	5	1	31	1.31
3234024--3234064	19	2.2	19	86	4	57	73	9	7	9	1.26
3234053--3234107	21	2.6	20	75	11	56	67	1	3	27	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3234236--3234376	55	2.6	51	74	20	128	36	4	2	56	1.34
3234406--3234454	20	2.5	20	77	12	55	30	2	12	55	1.48
3234406--3234465	30	2.1	28	87	6	84	31	1	11	55	1.46
3234421--3234462	19	2.2	20	86	4	59	28	0	9	61	1.27
3234431--3234473	19	2.3	19	84	8	52	34	0	6	58	1.25
3234532--3234661	10	13.1	10	71	10	61	36	1	6	56	1.34
3234533--3234643	40	2.8	40	77	14	122	36	1	6	55	1.36
3234618--3234652	18	1.9	18	88	0	52	40	0	5	54	1.24
3237887--3237918	16	2.0	16	93	0	55	34	0	21	43	1.53
3238651--3238740	46	2.0	46	91	4	146	42	11	24	22	1.86
3239405--3239455	23	2.2	23	89	0	84	17	7	15	58	1.60
3249034--3249078	24	1.9	23	86	4	63	60	4	11	24	1.49
3253238--3253281	22	2.0	22	86	0	61	43	13	11	31	1.80
3258261--3258288	10	2.8	10	100	0	56	64	10	0	25	1.26
3258246--3258315	25	2.8	24	80	8	70	61	15	1	21	1.42
3261176--3261201	13	2.0	13	100	0	52	84	0	0	15	0.62
3261642--3261675	11	3.2	11	87	8	52	61	8	0	29	1.26
3261663--3262009	9	36.6	9	66	23	74	55	9	1	34	1.41
3261663--3261707	16	2.9	15	90	9	72	62	6	2	28	1.33
3261642--3262010	10	37.5	10	66	19	95	55	9	1	33	1.41
3261663--3261710	17	3.0	16	93	6	80	60	6	2	31	1.33
3261677--3262009	19	17.3	18	66	20	83	54	9	1	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3261804--3261844	21	2.0	21	90	0	64	56	9	2	31	1.45
3262045--3262083	17	2.3	17	81	0	51	61	10	5	23	1.48
3262162--3262213	20	2.5	21	78	6	61	57	0	1	40	1.10
3262276--3262335	10	6.2	10	72	12	54	23	0	6	70	1.11
3262276--3262335	19	3.1	20	79	15	72	23	0	6	70	1.11
3262256--3262335	29	2.9	28	78	14	85	27	0	6	66	1.16
3262388--3262439	15	3.4	16	78	10	63	17	1	3	76	1.02
3262388--3262431	22	2.0	22	82	8	54	18	2	2	77	0.98
3262643--3262676	10	3.4	10	83	0	50	38	8	0	52	1.33
3262606--3262676	20	3.6	19	77	12	72	32	7	7	53	1.55
3262699--3262843	9	15.4	9	70	11	78	35	1	4	59	1.25
3262725--3262836	19	6.0	18	70	14	68	33	0	5	60	1.25
3263349--3263746	60	6.7	58	74	11	306	35	14	6	43	1.72
3263349--3263746	119	3.3	116	77	10	351	35	14	6	43	1.72
3263565--3263597	15	2.1	16	88	5	50	36	6	6	51	1.51
3264880--3265249	86	4.3	86	79	3	345	44	17	17	20	1.87
3264880--3265272	170	2.3	170	80	4	450	43	17	17	20	1.88
3264880--3265272	85	4.6	85	78	5	364	43	17	17	20	1.88
3265533--3265607	17	4.5	17	68	9	55	44	13	12	30	1.80
3266790--3266837	7	6.4	7	77	13	51	14	16	0	68	1.21
3266796--3266840	16	2.9	16	81	15	58	13	17	0	68	1.20
3270678--3271016	119	2.9	120	84	5	422	35	12	6	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3275288--3275327	17	2.2	19	86	13	57	77	0	2	20	0.88
3278128--3278152	12	2.1	12	100	0	50	32	0	16	52	1.44
3286554--3286591	20	2.0	20	89	5	60	28	7	10	52	1.64
3287093--3287127	17	2.0	18	88	5	54	74	5	8	11	1.22
3288829--3288937	3	38.3	3	75	17	99	33	1	3	61	1.24
3288829--3288933	40	2.7	39	78	11	117	33	1	3	60	1.25
3289779--3289815	19	1.9	19	88	0	56	32	0	5	62	1.18
3294608--3294698	45	2.0	45	95	4	166	29	15	19	35	1.93
3295364--3295637	115	2.4	115	79	2	273	25	25	13	35	1.93
3295472--3295794	115	2.8	114	77	4	317	24	28	13	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91