genome.fa.s201.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  91  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15454521--15454633	54	2.1	54	89	0	172	32	16	15	34	1.91
15456113--15456151	20	2.0	20	89	0	60	41	2	2	53	1.28
15457876--15458008	45	2.9	45	83	7	171	35	13	9	42	1.76
15458683--15458776	44	2.1	45	82	7	113	36	12	9	41	1.76
15458907--15459039	46	3.0	44	86	5	176	33	13	12	39	1.83
15458691--15459856	266	4.4	266	94	0	2014	35	15	14	33	1.89
15459174--15459308	44	3.0	45	85	6	168	33	11	11	43	1.77
15459439--15459574	46	3.0	45	91	5	213	33	13	11	41	1.79
15459705--15459839	45	3.0	44	81	9	166	35	13	11	40	1.80
15460519--15460610	44	2.1	45	93	2	159	33	13	11	41	1.81
15461468--15461556	34	2.6	34	78	7	99	34	7	12	44	1.71
15463894--15463933	21	2.0	21	90	5	64	42	0	0	57	0.98
15463897--15463944	20	2.3	21	82	3	62	52	0	0	47	1.00
15465533--15465567	19	1.9	18	88	11	54	40	2	28	28	1.71
15465603--15465638	17	2.1	17	89	0	54	47	0	2	50	1.15
15465601--15465632	15	2.1	15	94	0	55	50	0	0	50	1.00
15466486--15466632	72	2.0	73	84	3	190	36	16	18	28	1.92
15469395--15469420	2	13.0	2	100	0	52	50	0	0	50	1.00
15472913--15472949	8	4.6	8	86	0	56	43	0	0	56	0.99
15472913--15472967	16	3.6	16	80	11	62	47	0	0	52	1.00
15472939--15472991	23	2.4	23	90	9	85	50	0	0	49	1.00
15473608--15473668	29	2.1	30	81	3	70	45	8	0	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15474054--15474081	12	2.3	12	100	0	56	35	0	0	64	0.94
15474266--15474344	27	3.1	27	79	13	80	25	6	1	67	1.22
15474266--15474389	17	7.2	18	71	14	77	25	6	1	66	1.25
15474710--15474775	31	2.1	32	83	8	82	19	10	19	50	1.77
15475299--15475356	6	9.7	6	78	17	59	13	5	0	81	0.86
15475298--15475361	31	2.0	33	90	6	105	14	6	0	79	0.91
15475374--15475649	58	4.7	57	81	8	299	43	7	13	35	1.72
15475373--15475645	117	2.3	115	82	9	320	44	6	13	34	1.71
15479580--15479622	9	5.0	8	81	13	50	86	0	9	4	0.71
15479571--15479620	17	2.9	17	88	8	66	84	0	10	6	0.79
15479571--15479619	8	5.6	9	77	18	50	83	0	10	6	0.80
15481458--15481659	80	2.5	81	87	4	266	26	16	20	37	1.93
15481458--15481737	41	6.8	41	82	5	262	25	16	21	37	1.93
15481452--15481783	41	8.0	41	81	7	206	25	15	19	38	1.92
15481594--15481782	42	4.5	41	84	6	191	25	16	20	37	1.93
15490367--15490401	15	2.3	15	100	0	70	62	20	5	11	1.48
15491855--15492091	49	4.8	49	86	7	304	27	11	23	37	1.90
15491852--15492091	99	2.5	97	87	6	342	27	11	23	37	1.90
15492100--15492170	19	3.6	19	75	21	67	80	2	1	15	0.90
15492310--15492358	3	16.3	3	86	0	71	59	0	0	40	0.98
15493471--15493525	17	3.2	17	73	17	51	63	1	3	30	1.22
15493697--15493747	19	2.6	20	78	12	61	68	0	1	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15494185--15494223	20	2.0	20	84	0	51	79	5	2	12	1.00
15496241--15496418	57	3.1	56	82	4	205	37	11	7	43	1.69
15496456--15496501	17	2.8	17	78	15	60	71	0	2	26	0.97
15496456--15496495	20	2.0	20	95	0	71	70	0	2	27	1.01
15496460--15496508	22	2.1	23	85	14	66	73	0	4	22	1.00
15497610--15498360	130	5.8	126	79	8	660	43	19	13	22	1.86
15497573--15498354	44	18.0	43	76	9	667	43	19	14	22	1.87
15499345--15499395	14	3.7	14	84	2	68	9	13	0	76	1.02
15499361--15499408	9	5.8	9	81	18	68	10	10	0	79	0.95
15499347--15499408	32	1.9	31	87	12	90	9	12	0	77	0.99
15499361--15499404	23	1.9	23	100	0	88	11	11	0	77	1.00
15507107--15507151	21	2.2	20	84	4	54	17	24	6	51	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91

The End!