genome.fa.s201.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  45  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443530--7443987	230	2.0	230	96	0	853	35	19	15	29	1.93
7444419--7444468	13	3.8	13	82	10	50	74	2	4	20	1.08
7448028--7448083	18	3.2	18	77	12	62	57	7	3	32	1.43
7448721--7449036	172	1.8	173	83	3	422	44	8	8	38	1.66
7448732--7449679	177	5.3	179	76	8	694	40	7	10	41	1.67
7448917--7449679	358	2.1	354	81	5	865	40	7	10	41	1.67
7449693--7451393	181	9.5	178	75	7	1021	41	7	9	41	1.65
7449693--7451295	361	4.5	357	76	7	1256	41	7	8	41	1.65
7449693--7451091	542	2.6	532	79	7	1312	41	7	9	41	1.66
7451545--7451608	26	2.5	26	80	7	69	53	3	1	42	1.26
7451667--7451770	37	2.8	38	77	15	110	49	1	1	47	1.23
7451700--7451764	17	3.9	16	71	16	60	50	3	1	44	1.26
7451653--7451758	33	3.1	33	74	16	92	49	0	2	47	1.22
7454023--7454095	20	3.7	18	75	17	56	49	2	0	47	1.15
7454269--7454314	12	3.8	12	82	5	56	56	0	0	43	0.99
7454505--7454545	14	2.7	16	78	21	52	41	0	0	58	0.98
7455241--7455511	86	3.2	84	67	15	243	44	9	0	45	1.42
7455155--7455560	169	2.4	169	94	3	730	45	7	1	45	1.41
7455762--7455808	18	2.9	16	76	17	51	53	0	2	44	1.12
7456037--7456173	16	8.1	16	71	18	75	46	0	0	51	1.11
7456065--7456166	42	2.3	45	85	6	129	46	0	0	52	1.07
7456075--7456165	19	4.9	19	70	18	66	45	1	0	53	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7456068--7456165	3	33.7	3	69	17	55	44	1	0	54	1.07
7456224--7456297	30	2.4	30	82	10	80	44	2	2	50	1.30
7456398--7456446	20	2.4	21	80	10	57	55	0	2	42	1.11
7456407--7456446	20	2.0	20	90	5	62	55	0	2	42	1.13
7456471--7456528	9	6.2	9	82	11	64	53	1	0	44	1.10
7456386--7456509	27	4.8	26	70	18	75	50	2	0	46	1.20
7456407--7456526	27	4.4	27	73	14	77	51	2	0	45	1.20
7457039--7457118	26	3.0	26	84	14	85	50	2	1	46	1.23
7457070--7457120	18	2.9	17	79	5	57	47	1	1	49	1.24
7457255--7457307	12	4.6	12	80	15	58	52	5	0	41	1.25
7457750--7457774	13	1.9	13	100	0	50	48	0	0	52	1.00
7457848--7458140	157	1.9	152	84	4	390	41	9	6	42	1.62
7458671--7458725	19	3.1	19	82	12	55	45	3	1	49	1.30
7458995--7459046	19	2.5	20	78	12	61	57	3	0	38	1.17
7458996--7459049	16	3.1	18	76	12	60	55	3	0	40	1.17
7459038--7459093	19	2.9	18	84	10	67	46	0	0	53	1.00
7459404--7459433	15	2.0	15	100	0	60	53	0	0	46	1.00
7459629--7459669	10	4.2	10	79	17	50	41	4	0	53	1.22
7459636--7459673	19	2.0	20	89	5	60	42	2	0	55	1.14
7459836--7459876	20	2.0	21	86	13	59	53	0	2	43	1.13
7460198--7460264	17	3.5	17	71	24	62	47	1	1	49	1.19
7460173--7460264	41	2.2	41	98	0	175	48	2	1	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7460173--7460255	24	3.8	24	68	23	74	49	2	1	46	1.22
7460453--7460513	17	3.3	19	80	19	67	39	4	0	55	1.21
7461231--7461333	48	2.1	48	85	0	143	27	10	7	54	1.62
7461695--7461733	16	2.6	15	80	11	53	33	0	0	66	0.92
7461767--7461815	20	2.5	19	81	15	55	79	6	2	12	0.99
7462203--7462342	44	3.2	45	78	14	125	49	0	2	48	1.13
7462244--7462275	17	1.9	17	93	6	57	50	0	0	50	1.00
7462232--7462289	13	4.7	13	75	14	52	51	0	0	48	1.00
7462249--7462351	17	6.1	17	71	21	58	50	0	0	48	1.07
7462305--7462351	2	26.0	2	76	20	50	48	0	2	48	1.13
7462226--7462333	21	4.9	22	72	15	80	52	0	0	47	1.00
7462770--7462810	14	2.9	14	86	10	57	51	0	2	46	1.14
7463391--7463442	21	2.4	23	81	12	65	46	1	0	51	1.12
7464144--7464191	21	2.3	21	82	7	53	50	0	6	43	1.27
7465152--7465190	6	6.7	6	82	5	53	46	2	2	48	1.29
7465151--7465190	17	2.3	17	86	4	53	45	2	2	50	1.28
7467083--7467129	10	4.9	10	78	17	55	51	0	0	48	1.00
7467086--7467150	24	2.7	24	85	7	78	52	0	0	47	1.00
7467083--7467123	6	6.8	6	84	15	50	51	0	0	48	1.00
7467510--7467543	8	4.2	8	96	0	59	52	0	0	47	1.00
7467574--7467629	29	1.9	29	82	7	69	51	1	0	46	1.11
7467778--7467837	29	2.1	28	84	12	77	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7467792--7467841	14	3.6	14	81	7	66	52	0	0	48	1.00
7467940--7467991	18	2.9	18	82	5	61	46	1	0	51	1.12
7468915--7468971	12	4.7	11	75	16	51	49	1	0	49	1.11
7468915--7468971	24	2.3	25	84	3	80	49	1	0	49	1.11
7468915--7469020	14	7.9	13	69	22	51	50	3	0	45	1.19
7469913--7469966	21	2.7	21	83	11	60	50	0	1	48	1.11
7470388--7470435	23	2.2	21	85	14	62	50	4	0	45	1.21
7470885--7471697	181	4.5	180	79	4	707	41	8	8	41	1.65
7470995--7471743	359	2.1	356	79	5	855	41	8	8	42	1.64
7472158--7472190	18	1.9	17	88	11	50	48	9	6	36	1.60
7472424--7473000	181	3.2	181	77	6	518	41	7	9	41	1.66
7471777--7473000	175	6.9	179	73	9	801	41	7	9	41	1.65
7472837--7473158	159	2.0	158	83	7	404	41	7	9	41	1.65
7472996--7473454	182	2.5	180	80	9	485	38	8	9	42	1.69
7473554--7473600	18	2.7	18	77	12	53	38	12	4	44	1.62
7473559--7474199	181	3.5	179	80	5	684	37	10	9	42	1.72
7475965--7475989	13	1.9	13	100	0	50	44	0	8	48	1.32
7475957--7475996	12	3.2	12	86	6	53	40	0	7	52	1.30
7476027--7476093	16	4.1	17	71	19	61	47	1	0	50	1.10
7476025--7476115	27	3.6	26	76	16	77	48	1	1	49	1.15
7476095--7476138	20	2.2	20	84	8	54	52	0	2	45	1.13
7476154--7476211	19	2.9	21	72	15	59	53	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7476256--7476316	26	2.4	25	84	15	74	52	1	0	45	1.10
7476909--7476940	14	2.1	16	88	11	50	53	3	0	43	1.16
7477176--7477221	20	2.3	20	85	7	58	47	2	0	50	1.13
7477368--7477410	13	3.4	13	77	3	52	39	0	4	55	1.20
7477353--7477431	35	2.4	33	81	14	83	44	1	2	51	1.23
7477872--7477904	18	1.9	17	88	11	50	48	6	6	39	1.53
7478416--7478440	9	2.8	9	100	0	50	44	0	0	56	0.99
7478729--7478767	6	6.7	6	82	5	53	48	2	2	46	1.29
7478729--7478768	17	2.3	17	86	4	53	50	2	2	45	1.28
7479408--7479483	23	3.5	23	74	20	74	55	0	5	39	1.23
7479413--7479476	19	3.1	19	73	26	51	56	0	6	37	1.25
7479987--7480026	21	1.9	21	85	10	55	42	2	5	50	1.37
7480394--7480428	16	2.3	15	90	5	52	42	0	8	48	1.33
7480511--7480575	27	2.5	23	73	23	58	46	3	4	46	1.39
7480679--7480769	47	2.0	46	82	10	114	46	3	1	49	1.25
7480817--7480854	14	2.7	14	80	15	51	52	0	2	44	1.14
7481527--7481641	41	2.9	40	76	17	123	50	3	1	44	1.29
7481794--7481853	22	2.5	23	79	17	61	45	3	1	50	1.28
7481973--7482028	25	2.2	25	87	6	78	50	0	0	50	1.00
7481971--7482043	27	2.8	26	83	8	94	47	1	0	50	1.09
7481977--7482015	16	2.5	15	83	4	51	46	0	0	53	1.00
7482213--7482248	18	2.0	18	89	10	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7482742--7482885	19	7.8	19	69	20	67	52	1	1	44	1.18
7482756--7482831	12	6.4	11	75	20	64	56	0	1	42	1.07
7482755--7482852	26	4.0	25	77	11	80	57	2	1	39	1.17
7483256--7483300	16	2.8	16	82	3	54	48	0	2	48	1.13
7483541--7483585	23	2.0	23	86	8	65	40	0	2	57	1.11
7484606--7484672	24	2.6	26	73	22	68	49	1	0	49	1.10
7484598--7484656	24	2.5	24	81	13	68	47	1	1	49	1.21
7485023--7485066	23	1.9	22	82	17	54	43	2	6	47	1.42
7485052--7485107	27	2.1	27	83	9	71	50	1	0	48	1.11
7485535--7485588	17	3.4	16	78	21	60	46	1	0	51	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91