genome.fa.s201.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  42  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7213882--7213959	14	5.6	13	75	10	57	46	33	5	15	1.68
7213882--7213963	21	3.9	21	75	12	78	46	32	4	15	1.68
7213914--7213943	7	4.3	7	95	0	51	46	30	10	13	1.75
7215669--7215720	6	8.7	6	86	0	68	76	19	1	1	0.97
7215910--7215989	38	2.1	38	86	4	108	36	13	10	40	1.79
7219476--7219524	8	5.8	8	77	13	53	81	2	6	10	0.94
7219468--7219523	27	2.1	27	87	9	80	78	1	8	10	1.03
7219476--7219531	18	3.2	18	78	9	53	82	3	5	8	0.94
7221657--7221797	8	17.6	8	73	5	88	19	1	28	50	1.56
7221658--7221755	39	2.5	39	83	5	117	19	1	27	52	1.53
7221657--7221776	48	2.5	48	79	5	143	21	1	27	49	1.59
7221657--7221797	16	8.8	16	72	9	117	19	1	28	50	1.56
7221881--7221932	3	17.0	3	96	4	95	34	0	0	65	0.93
7223680--7223709	10	3.1	10	95	4	53	63	0	0	36	0.95
7225520--7225675	70	2.2	69	82	1	186	47	12	21	17	1.81
7225560--7225711	69	2.2	70	83	1	180	48	10	21	20	1.79
7225624--7225814	105	1.8	104	82	1	247	50	12	19	17	1.77
7227340--7227538	23	8.9	23	72	9	108	29	15	24	30	1.96
7230751--7231664	180	5.1	175	77	9	783	40	7	9	42	1.66
7230751--7252819	362	61.1	358	71	11	9258	40	8	9	41	1.68
7231952--7232269	175	1.8	175	82	2	406	44	7	7	40	1.63
7232233--7232265	18	1.9	17	88	11	50	48	3	6	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7231744--7252819	181	116.4	179	70	11	7338	40	8	9	41	1.68
7230835--7252819	898	24.3	890	70	12	6965	40	8	9	41	1.68
7234569--7234601	18	1.9	17	88	11	50	48	3	6	42	1.43
7238266--7238729	179	2.6	181	78	7	464	38	8	10	42	1.69
7238378--7238724	180	1.9	182	83	5	445	38	6	10	44	1.65
7238660--7238903	135	1.8	135	85	3	348	38	8	8	44	1.66
7238482--7239064	315	1.9	314	79	7	682	39	7	9	43	1.66
7238795--7239850	180	5.9	179	79	5	1010	41	7	8	42	1.65
7239319--7239351	17	2.0	17	88	5	50	48	0	12	39	1.40
7238799--7239850	357	2.9	357	80	7	1116	41	7	8	42	1.65
7240041--7240462	180	2.3	180	81	4	451	39	9	8	42	1.67
7250534--7250580	16	2.7	18	74	16	53	40	14	6	38	1.72
7252914--7252954	18	2.2	18	86	4	55	56	2	4	36	1.34
7252826--7254620	181	10.1	177	75	9	1212	41	10	8	39	1.69
7252972--7265334	538	22.9	525	70	14	2588	42	9	7	40	1.67
7252939--7254541	705	2.3	704	79	9	1610	41	10	8	39	1.69
7253630--7254903	521	2.4	517	78	9	1240	42	9	7	40	1.66
7255368--7256284	181	5.1	180	78	7	871	43	10	7	38	1.68
7255853--7255895	19	2.4	18	84	7	52	39	9	11	39	1.74
7255375--7263623	358	22.9	362	71	12	1146	42	9	7	40	1.67
7256222--7256351	65	2.0	67	90	3	210	38	12	4	44	1.63
7256281--7265415	181	50.9	180	74	7	5711	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7259008--7259406	173	2.3	176	77	11	390	42	10	7	39	1.66
7263601--7263645	19	2.4	19	81	7	56	33	11	4	51	1.58
7263422--7263855	231	1.9	234	83	4	583	40	10	8	41	1.70
7263857--7264452	177	3.3	182	76	7	434	43	11	7	38	1.69
7264301--7264619	172	1.9	170	85	1	440	41	12	8	37	1.72
7263974--7265415	526	2.7	529	78	7	1213	42	10	8	38	1.70
7265496--7265558	6	10.8	6	94	5	103	17	11	0	71	1.14
7265493--7265590	17	5.7	17	85	5	110	17	9	0	73	1.08
7265552--7265618	9	7.1	9	71	25	50	19	5	0	74	1.02
7265493--7265590	6	17.0	6	88	7	87	17	9	0	73	1.08
7266600--7266712	17	6.6	18	69	19	73	20	2	3	73	1.10
7266599--7266675	11	6.8	11	73	15	50	23	1	3	71	1.10
7266649--7266733	17	5.1	17	70	14	61	15	5	2	76	1.08
7266768--7266915	58	2.5	58	88	7	210	41	7	14	36	1.75
7270301--7270326	10	2.6	10	100	0	52	92	0	7	0	0.39
7270654--7270716	22	2.8	22	76	7	54	69	0	17	12	1.18
7270650--7270724	26	2.8	26	69	13	64	68	0	18	13	1.22
7270673--7270733	34	1.9	30	83	12	77	72	0	14	13	1.13
7270707--7270740	16	2.1	16	94	0	59	73	0	17	8	1.08
7271978--7272349	42	9.1	41	86	7	506	23	17	22	37	1.94
7272137--7272205	34	2.0	35	91	2	113	27	11	21	39	1.88
7272011--7272328	160	2.0	161	91	4	518	23	16	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7271978--7272349	202	1.8	201	91	1	620	23	17	22	37	1.94
7272541--7272645	11	9.5	11	76	15	92	20	3	0	76	0.94
7272541--7272620	37	2.2	37	88	4	117	20	2	0	77	0.88
7272541--7272617	6	14.0	6	81	14	78	19	2	0	77	0.88
7273657--7273752	11	8.4	11	73	19	72	16	5	2	76	1.07
7273643--7273742	5	19.2	5	73	17	71	18	5	2	75	1.09
7273657--7273734	6	13.5	6	70	17	58	16	5	1	76	1.02
7273657--7273752	17	5.5	17	74	16	81	16	5	2	76	1.07
7273656--7273752	35	2.8	34	78	20	101	16	6	2	75	1.10
7273692--7273721	13	2.2	14	94	5	53	20	0	0	80	0.72
7273657--7273752	23	4.1	22	76	14	95	16	5	2	76	1.07
7273643--7273733	28	3.3	26	77	11	74	18	5	1	74	1.07
7273748--7274041	58	5.1	58	86	4	355	43	7	14	34	1.75
7274077--7274101	13	1.9	13	100	0	50	12	0	0	88	0.53
7274573--7278578	177	22.5	179	73	10	2410	41	9	8	40	1.67
7275126--7278578	180	19.3	181	74	8	2174	42	9	8	40	1.66
7275591--7278235	361	7.4	353	74	10	975	42	9	7	40	1.65
7277069--7277110	20	2.1	20	86	8	59	40	7	0	52	1.29
7274573--7278578	180	22.5	180	73	9	1858	41	9	8	40	1.67
7280964--7288753	181	43.6	181	72	10	1444	40	8	9	41	1.67
7281049--7285466	180	24.7	180	73	9	631	41	8	8	41	1.66
7283218--7283254	18	2.2	18	90	9	60	37	2	8	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7282925--7283348	176	2.4	179	77	10	400	37	7	9	45	1.64
7283861--7284187	165	2.0	164	86	3	460	40	7	9	42	1.67
7285120--7285162	20	2.1	21	87	12	63	51	4	9	34	1.55
7284026--7288262	721	5.9	715	75	9	2025	40	8	9	41	1.67
7283549--7287576	721	5.6	719	75	8	1781	41	7	9	41	1.66
7288806--7292689	181	21.6	179	69	14	1138	40	8	9	41	1.68
7288867--7289619	177	4.2	177	76	7	534	40	8	9	41	1.68
7289579--7289653	39	1.9	39	86	0	105	46	10	13	29	1.76
7289386--7289842	218	2.1	218	80	5	512	41	9	10	38	1.72
7289674--7292696	181	17.0	179	73	11	1380	40	8	9	41	1.69
7290603--7290911	165	1.9	164	81	2	377	39	7	9	44	1.64
7290757--7292657	355	5.3	358	75	9	1460	39	8	9	42	1.68
7290767--7292657	715	2.6	715	76	7	1579	39	8	9	42	1.68
7280991--7292696	537	21.8	527	73	11	3512	40	8	9	41	1.68
7294751--7297787	181	17.1	180	75	9	1840	41	8	9	40	1.68
7294728--7297096	540	4.4	539	76	7	1546	41	8	9	40	1.68
7295182--7296155	538	1.8	540	81	4	1221	42	8	9	39	1.67
7295117--7296843	352	4.8	353	76	6	1012	41	8	9	39	1.68
7294752--7297714	709	4.2	703	75	7	1967	41	8	9	40	1.68
7294754--7297772	361	8.5	357	75	9	1683	41	8	9	40	1.68
7297784--7298583	181	4.4	180	78	5	740	41	7	9	41	1.66
7300228--7301749	181	8.5	177	76	8	740	39	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7300228--7307196	543	13.0	534	71	11	2382	40	8	9	41	1.68
7301628--7301925	164	1.8	164	82	4	386	37	9	10	41	1.72
7302494--7302873	177	2.1	177	80	3	417	43	7	9	38	1.66
7301792--7303781	181	11.0	176	73	10	1066	40	7	9	42	1.66
7301792--7303778	362	5.5	356	72	10	1292	40	7	9	42	1.66
7304062--7304399	180	1.9	181	83	8	447	40	10	6	41	1.66
7303811--7307197	181	19.0	180	74	8	1838	40	8	9	41	1.69
7305442--7305486	16	2.6	18	75	17	58	42	6	6	44	1.57
7304961--7306123	541	2.2	532	79	6	1220	39	8	10	41	1.70
7305957--7306289	167	2.0	166	80	5	368	39	9	10	41	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91