genome.fa.s201.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  17  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2984860--2985523	195	3.4	194	84	8	812	37	31	16	14	1.89
2985205--2985482	57	5.3	57	65	24	171	37	30	16	15	1.89
2991786--2991833	22	2.2	21	85	3	60	27	0	4	68	1.07
2993834--2994134	49	6.1	49	84	2	372	39	16	10	32	1.84
2993812--2994127	97	3.3	97	82	6	365	41	16	11	31	1.84
2998074--2998119	24	1.9	24	82	8	58	45	2	4	47	1.34
2998228--2998285	31	1.9	29	86	6	80	50	3	0	46	1.18
3004231--3004292	22	2.8	22	76	13	56	46	6	11	35	1.65
3004330--3004443	22	5.2	22	77	8	90	52	5	7	35	1.51
3004383--3004466	22	3.8	22	76	7	55	54	3	9	32	1.50
3004455--3004515	22	2.8	22	75	5	61	57	9	6	26	1.55
3004606--3004665	22	2.7	22	84	0	84	46	10	8	35	1.67
3004989--3005160	22	7.6	21	67	20	64	49	4	8	37	1.55
3005134--3005226	22	4.2	22	70	10	64	51	6	4	37	1.47
3005290--3005341	22	2.4	22	86	0	68	44	1	13	40	1.55
3005378--3005415	19	2.0	20	89	5	60	50	2	5	42	1.39
3005559--3005621	23	2.8	23	80	2	65	42	3	11	42	1.56
3005623--3005774	22	6.9	22	83	2	162	47	5	5	41	1.50
3005634--3005814	44	4.1	44	80	6	174	48	6	6	38	1.54
3005632--3005814	66	2.8	66	79	7	176	48	6	6	38	1.54
3005623--3005840	22	10.0	22	83	4	158	47	5	7	38	1.57
3006066--3006147	22	3.8	22	78	9	80	46	7	10	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006269--3006408	22	6.4	22	76	6	113	49	9	3	37	1.52
3006269--3006427	66	2.4	66	84	8	191	49	9	4	36	1.55
3006257--3006440	44	4.2	43	75	10	117	48	8	5	38	1.56
3006356--3006442	44	2.0	44	86	0	120	49	6	5	37	1.54
3006631--3006695	34	1.9	34	93	0	112	52	10	4	32	1.57
3008296--3008335	21	2.0	20	90	5	62	82	0	7	10	0.84
3011679--3011711	2	16.5	2	93	0	57	0	54	0	45	0.99
3013157--3013273	62	1.9	62	81	0	144	36	19	11	31	1.88
3013158--3013287	62	2.1	62	79	2	136	37	20	10	31	1.86
3015968--3016002	16	2.2	16	89	0	52	74	0	20	5	1.02
3016077--3016251	60	2.9	60	82	8	214	36	12	5	46	1.63
3016163--3016325	74	2.2	74	86	8	208	36	9	5	47	1.60
3016238--3016421	58	3.1	59	82	10	214	39	10	4	45	1.60
3016122--3016386	135	2.0	139	87	6	393	36	10	5	47	1.61
3016258--3016425	63	2.8	59	84	8	214	38	10	4	45	1.60
3016258--3016457	63	3.2	62	78	13	191	38	9	6	47	1.60
3016525--3016557	11	3.3	10	91	8	50	60	0	0	39	0.97
3017306--3017417	3	37.7	3	72	12	52	74	2	2	20	1.07
3017294--3017420	15	8.7	15	73	19	67	73	3	2	21	1.09
3017294--3017424	6	21.3	6	70	17	74	74	3	2	20	1.07
3017279--3017427	20	7.7	20	73	16	86	73	4	2	20	1.09
3017284--3017424	55	2.6	55	80	12	157	74	3	2	19	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3017349--3017394	21	2.2	21	88	0	65	78	2	2	17	0.96
3017303--3017427	31	3.9	32	74	19	102	74	2	2	20	1.05
3017573--3017620	14	3.7	13	81	13	55	2	2	12	83	0.83
3017769--3017801	16	2.1	16	100	0	66	69	6	6	18	1.30
3028799--3028837	16	2.3	16	86	8	51	48	0	2	48	1.15
3028655--3028866	59	3.5	58	80	8	212	39	14	3	42	1.62
3028953--3029002	4	13.8	4	87	12	65	74	0	0	26	0.83
3039770--3039804	14	2.5	14	90	0	52	8	2	20	68	1.29
3040348--3040597	49	5.1	48	78	6	245	38	18	10	32	1.85
3040348--3040597	99	2.6	96	80	9	272	38	18	10	32	1.85
3042904--3043025	61	2.0	61	98	0	235	32	20	8	38	1.82
3047421--3047462	22	2.0	22	90	4	68	33	14	21	30	1.93
3047420--3047468	22	2.4	21	83	12	66	32	12	20	34	1.90
3051007--3051322	161	2.0	161	81	6	381	32	9	14	43	1.77
3053008--3053056	19	2.6	19	80	0	71	30	12	26	30	1.92
3058378--3058445	30	2.3	30	86	0	100	39	2	5	51	1.41
3060588--3060771	54	3.4	54	81	3	226	38	33	16	10	1.84
3060758--3060820	27	2.7	21	72	25	63	34	36	15	12	1.86
3060704--3061515	102	8.0	102	94	0	1246	38	32	16	13	1.87
3060764--3061053	57	5.5	55	62	26	137	39	32	15	12	1.85
3060818--3060996	45	3.7	46	69	22	141	41	31	15	11	1.82
3061037--3061200	45	3.4	45	64	23	107	38	30	18	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061082--3061461	57	7.3	57	63	24	203	37	31	16	14	1.89
3061227--3061404	45	3.7	45	69	22	128	41	30	15	12	1.84
3069204--3069263	24	2.6	22	74	10	57	3	15	25	56	1.54
3069758--3070056	97	3.1	97	84	6	363	39	16	11	32	1.85
3069758--3070056	49	6.1	49	84	5	354	39	16	11	32	1.85
3073621--3073663	4	10.8	4	89	0	59	41	0	0	58	0.98
3073621--3073663	6	7.2	6	91	0	59	41	0	0	58	0.98
3073621--3073663	10	4.3	10	90	0	59	41	0	0	58	0.98
3073879--3073923	24	1.9	23	82	13	56	28	0	13	57	1.36
3074321--3074372	25	2.1	25	92	0	86	34	15	5	44	1.70
3077797--3077835	21	1.9	20	94	5	69	17	7	0	74	1.05
3078692--3078734	16	2.6	16	81	7	50	32	0	2	65	1.06
3078728--3078771	21	2.2	20	88	11	65	45	0	0	54	0.99
3078724--3078772	18	2.6	19	84	12	66	44	0	0	55	0.99
3079341--3079408	24	2.7	25	76	13	68	45	1	1	51	1.19
3079371--3079431	17	3.5	17	76	19	63	42	0	1	55	1.09
3079985--3080312	162	2.0	163	86	4	464	43	9	13	33	1.76
3080648--3080708	29	2.1	30	93	3	106	65	8	3	22	1.34
3080659--3080716	29	2.0	28	83	12	73	68	6	3	20	1.27
3085444--3085588	52	2.8	50	86	8	191	27	21	8	42	1.81
3085804--3085840	18	2.0	19	89	5	58	18	24	13	43	1.86
3085870--3085974	49	2.1	50	80	1	122	20	33	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3085888--3085974	25	3.5	25	72	7	70	20	32	8	39	1.82
3086531--3086661	52	2.5	52	86	2	174	25	20	9	45	1.80
3086686--3086725	11	3.6	11	86	0	62	52	32	0	15	1.43
3086686--3086728	22	2.0	22	100	0	86	48	32	0	18	1.48
3087033--3087091	29	2.0	31	83	6	77	55	0	3	40	1.16
3091195--3091219	13	1.9	13	100	0	50	48	0	4	48	1.20
3091906--3091945	18	2.1	20	86	9	57	42	0	12	45	1.42
3092657--3092682	2	13.0	2	100	0	52	50	0	0	50	1.00
3095070--3095123	25	2.1	26	86	6	74	38	3	5	51	1.43
3096047--3096142	37	2.6	38	77	9	92	53	13	12	20	1.72
3096087--3096226	33	4.1	33	76	3	118	42	17	13	25	1.86
3099005--3099314	158	2.0	158	86	0	440	40	17	10	31	1.82
3100404--3100454	21	2.5	22	78	9	63	45	1	0	52	1.12
3101138--3101162	12	2.1	12	100	0	50	92	0	8	0	0.40
3107943--3108046	18	5.6	19	68	19	69	69	0	16	14	1.20
3107944--3108040	8	11.9	8	73	15	65	69	0	16	14	1.20
3108994--3109039	23	2.0	23	82	0	56	39	2	17	41	1.62
3109160--3109230	21	3.2	21	79	13	72	40	1	9	47	1.45
3109167--3109253	45	1.9	45	81	9	106	40	4	11	43	1.61
3109360--3109424	23	2.9	21	77	11	58	36	7	18	36	1.80
3109459--3109499	20	2.0	21	85	4	57	36	4	19	39	1.73
3109732--3109778	16	2.9	16	74	0	58	25	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3109774--3109855	18	4.7	18	75	14	73	30	13	14	41	1.84
3109840--3109996	49	3.2	49	78	7	167	38	15	10	36	1.81
3109858--3110064	49	4.3	48	79	4	186	40	17	10	32	1.83
3110174--3110231	18	3.3	18	75	2	64	37	12	15	34	1.85
3110225--3110270	17	2.7	18	83	6	60	26	10	17	45	1.81
3111398--3111435	14	2.7	14	91	0	58	57	7	18	15	1.62
3111427--3111573	52	2.8	51	84	4	188	41	6	24	27	1.80
3113425--3113494	34	2.0	35	91	2	115	22	15	28	32	1.95
3119416--3119494	39	2.0	39	100	0	158	37	21	10	30	1.86
3120701--3120736	3	12.0	3	100	0	72	66	0	33	0	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91