genome.fa.s201.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  88  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14984028--14984077	26	2.0	26	84	11	68	40	2	4	54	1.31
14987482--14987527	24	1.9	24	86	0	65	32	0	2	65	1.05
14987499--14987577	18	3.9	19	75	23	65	30	3	7	58	1.44
14987536--14987577	20	2.2	18	91	8	66	33	4	7	54	1.49
14989256--14989311	22	2.5	22	77	5	60	32	0	1	66	1.03
14989551--14989585	16	2.2	16	89	0	52	42	0	8	48	1.33
14989561--14989637	38	2.0	39	85	12	106	48	7	6	37	1.58
14989972--14990064	46	2.0	45	81	6	107	60	2	15	22	1.46
14990136--14990285	76	2.0	75	96	1	273	44	9	13	33	1.76
14993474--14993504	16	1.9	16	100	0	62	45	12	6	35	1.68
14993513--14993590	20	3.8	19	80	15	86	48	2	2	46	1.29
14996695--14996756	33	1.9	33	90	3	99	35	9	0	54	1.33
14996725--14996777	24	2.2	25	80	9	58	37	5	3	52	1.43
14998345--14998409	33	2.0	32	81	3	76	32	13	3	50	1.57
14998752--14998790	21	1.9	21	94	5	71	74	7	0	17	1.05
15000012--15000047	11	3.1	11	88	11	54	77	0	5	16	0.94
15001036--15001085	20	2.3	23	80	20	70	52	0	0	48	1.00
15003081--15003160	16	4.8	16	71	7	52	38	2	0	58	1.11
15003089--15003152	5	11.6	5	75	18	56	35	3	0	60	1.12
15003090--15003152	11	5.6	11	80	12	67	34	3	0	61	1.12
15003694--15003859	83	2.0	83	89	0	251	32	12	19	35	1.89
15004668--15004703	18	2.0	18	94	0	63	22	5	19	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004898--15005037	35	4.3	35	80	15	190	27	24	12	35	1.91
15004935--15004995	26	2.3	26	91	0	95	29	22	11	36	1.90
15004900--15005030	61	2.1	61	94	0	226	29	23	11	35	1.90
15007166--15007216	25	2.0	25	92	0	84	45	5	37	11	1.65
15008304--15008577	145	1.9	145	80	4	320	33	6	6	53	1.54
15010275--15010328	19	2.6	21	77	16	58	74	7	1	16	1.14
15021783--15021940	83	1.9	83	85	0	217	29	12	21	36	1.91
15022914--15022962	24	2.0	24	96	0	89	46	8	22	22	1.77
15023530--15023580	21	2.4	21	100	0	102	15	17	17	49	1.81
15025731--15025801	37	1.9	36	91	2	115	36	5	12	45	1.66
15030882--15030950	29	2.4	29	82	4	77	44	2	1	50	1.25
15040637--15040662	13	2.0	13	100	0	52	15	0	0	84	0.62
15042360--15042441	10	8.4	10	70	20	50	65	9	1	23	1.29
15042351--15042413	32	2.0	32	87	6	92	60	6	1	31	1.31
15042545--15042601	17	3.4	17	78	7	53	68	7	3	21	1.29
15042558--15042601	18	2.6	18	85	7	56	72	6	2	18	1.17
15043385--15043411	7	3.9	7	100	0	54	55	0	0	44	0.99
15043900--15043933	2	17.0	2	93	0	59	50	2	0	47	1.16
15046217--15046267	25	2.1	24	85	10	68	54	1	3	39	1.30
15046275--15046319	13	3.5	13	79	8	56	73	0	0	26	0.84
15046270--15046319	26	1.9	26	92	8	84	70	0	0	30	0.88
15048367--15048448	25	3.2	26	76	10	89	21	2	3	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15048367--15048474	25	4.4	26	73	14	88	22	1	5	70	1.18
15048592--15048631	12	3.2	12	86	10	53	77	0	2	20	0.88
15048643--15048703	21	2.9	21	78	7	61	75	1	4	18	1.06
15048693--15049038	117	2.9	115	79	9	360	49	5	8	36	1.56
15052026--15052053	2	14.0	2	100	0	56	50	0	0	50	1.00
15063182--15063246	30	2.2	30	82	0	76	32	24	3	40	1.71
15073190--15073222	3	11.3	3	93	6	59	66	0	0	33	0.92
15083273--15083314	16	2.7	16	77	3	50	35	0	2	61	1.09
15083302--15083352	21	2.5	21	96	3	95	50	0	0	49	1.00
15083267--15083336	30	2.4	28	76	15	70	40	0	1	58	1.07
15090811--15090835	7	3.6	7	100	0	50	0	12	0	88	0.53
15091411--15091462	29	1.9	27	85	14	72	46	7	0	46	1.31
15093723--15093752	13	2.2	13	94	5	51	73	0	26	0	0.84
15093714--15093752	14	2.9	14	85	14	55	71	0	25	2	0.98
15094865--15094922	21	2.8	21	83	0	80	63	0	1	34	1.04
15095952--15096015	28	2.3	29	78	13	71	48	3	0	48	1.17
15095990--15096032	12	3.5	12	81	6	50	53	4	0	41	1.21
15102097--15102136	18	2.2	18	86	4	53	67	2	0	30	1.04
15107661--15107690	16	1.9	15	93	6	51	60	0	40	0	0.97
15107659--15107693	18	1.9	18	88	11	54	60	0	40	0	0.97
15109087--15109119	15	2.1	16	88	5	50	69	0	0	30	0.88
15112009--15112045	18	2.1	18	94	0	65	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15112009--15112050	7	6.4	7	78	15	54	30	0	0	69	0.89
15112009--15112059	25	2.0	26	88	3	77	31	0	0	68	0.90
15114012--15114054	20	2.2	20	100	0	86	18	13	4	62	1.48
15114833--15115360	58	9.1	57	76	15	408	36	9	5	48	1.59
15114878--15115334	119	3.9	119	85	7	580	35	10	4	49	1.58
15116102--15116161	20	3.1	19	77	17	61	1	10	13	75	1.13
15116463--15116572	12	9.5	11	70	19	55	27	0	7	65	1.19
15116468--15116638	81	2.1	82	80	10	185	26	2	5	65	1.26
15117068--15117133	31	2.2	30	83	2	78	24	25	22	27	2.00
15117696--15118211	57	8.7	57	85	9	626	44	8	12	34	1.73
15120887--15121346	159	2.9	159	92	3	741	40	17	13	28	1.88
15121377--15121401	1	25.0	1	100	0	50	100	0	0	0	0.00
15121736--15121781	20	2.3	20	84	0	56	17	21	28	32	1.96
15121799--15121841	20	2.2	20	100	0	86	4	25	32	37	1.77
15121805--15121849	20	2.2	20	88	0	63	11	24	33	31	1.90
15121855--15121918	19	3.7	19	67	30	54	29	20	26	23	1.99
15122414--15122515	40	2.5	41	78	13	113	63	5	0	30	1.18
15122715--15122807	1	93.0	1	72	0	60	7	0	7	84	0.76
15122707--15122748	19	2.2	19	95	0	75	9	0	7	83	0.81
15122727--15122807	22	3.6	22	83	11	103	7	0	7	85	0.75
15122706--15122807	8	13.0	8	75	15	72	8	0	7	83	0.82
15122707--15122808	23	4.3	22	75	16	73	7	0	8	83	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15122816--15123262	40	11.0	40	90	5	566	38	21	18	21	1.94
15122816--15123262	82	5.5	83	88	7	668	38	21	18	21	1.94
15122816--15123262	245	1.8	243	94	1	797	38	21	18	21	1.94
15124388--15124422	1	35.0	1	88	0	52	0	0	5	94	0.32
15124473--15124543	20	3.2	22	75	20	67	8	15	0	76	1.02
15124492--15124544	20	2.5	21	90	6	81	9	13	0	77	0.99
15124504--15124528	12	2.1	12	100	0	50	8	8	0	84	0.79
15124465--15124517	8	6.8	8	81	12	65	7	15	0	77	0.98
15124464--15124528	31	2.1	31	88	0	94	7	13	0	78	0.95
15124914--15124947	1	34.0	1	93	0	59	0	2	0	97	0.19
15128252--15128858	160	3.8	160	96	1	1069	39	17	14	28	1.89
15128903--15128929	1	27.0	1	100	0	54	100	0	0	0	0.00
15129263--15129308	20	2.3	20	84	0	56	17	21	28	32	1.96
15129326--15129364	20	2.0	20	100	0	78	5	23	30	41	1.76
15129332--15129376	20	2.2	20	84	0	54	11	22	33	33	1.89
15129943--15130044	40	2.5	41	78	13	113	63	5	0	30	1.18
15138221--15138332	37	3.1	37	80	15	135	75	0	12	11	1.04
15138221--15138318	7	13.7	7	87	10	137	76	0	11	12	1.02
15138218--15138326	14	7.6	14	77	16	98	77	0	11	11	0.98
15139341--15139872	42	13.0	41	87	7	719	23	17	20	38	1.93
15139341--15139872	82	6.5	80	88	7	707	23	17	20	38	1.93
15139880--15139967	17	5.4	17	81	10	103	88	11	0	0	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15139881--15139967	8	10.8	8	87	9	115	88	11	0	0	0.51
15139879--15139959	1	81.0	1	80	0	90	90	9	0	0	0.47
15140139--15140261	39	3.1	39	72	16	110	28	0	8	62	1.29
15140687--15140741	26	2.2	25	86	3	74	30	5	18	45	1.72
15140948--15140982	18	1.9	18	88	0	52	54	0	45	0	0.99
15141207--15141244	20	1.9	20	88	0	58	7	2	5	84	0.86
15141226--15141274	12	4.3	11	82	12	55	14	2	4	79	0.97
15141335--15141796	57	7.9	57	89	6	685	45	8	12	33	1.73
15141471--15141559	27	3.2	27	62	20	65	41	5	15	37	1.71
15142386--15142609	44	5.2	43	79	9	208	45	18	12	23	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91