genome.fa.s201.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  35  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5958454--5958505	20	2.6	19	82	14	61	28	1	9	59	1.40
5960463--5960501	20	2.0	20	89	0	60	43	28	2	25	1.68
5960574--5960615	22	2.0	20	86	9	57	33	23	2	40	1.68
5963189--5963228	15	2.7	15	92	0	62	15	0	27	57	1.38
5963203--5963250	22	2.2	21	88	3	69	14	2	29	54	1.52
5963344--5963401	14	4.1	13	75	18	53	17	1	29	51	1.55
5963421--5963467	14	3.2	14	75	21	51	17	4	27	51	1.64
5963425--5963477	16	3.5	15	76	10	54	22	1	28	47	1.62
5963421--5963477	30	1.9	30	85	7	80	21	3	26	49	1.65
5965035--5965086	17	3.1	18	86	8	65	71	0	5	23	1.07
5965034--5965080	23	2.0	24	87	4	69	70	0	4	25	1.05
5965461--5966443	37	26.3	38	75	8	623	46	16	22	14	1.83
5965463--5966416	75	12.8	74	75	7	675	46	16	22	14	1.83
5966144--5966214	36	1.9	37	82	2	90	42	19	22	15	1.89
5966581--5966716	69	2.0	68	81	9	161	45	13	20	20	1.84
5966955--5967081	35	3.7	35	75	6	107	49	12	18	19	1.79
5979667--5979748	21	3.8	22	73	13	73	15	1	31	51	1.52
5979697--5979778	29	2.9	28	83	8	112	19	1	30	48	1.57
5979696--5979788	14	6.6	13	71	18	62	18	1	32	48	1.55
5979697--5979805	57	1.9	58	81	9	134	19	1	33	45	1.61
5979816--5979864	14	3.6	14	80	5	55	18	4	22	55	1.60
5979818--5979861	13	3.3	13	78	6	52	15	4	20	59	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5979825--5979868	14	3.2	14	81	12	56	18	4	22	54	1.61
5979670--5979898	121	1.9	120	82	5	291	18	1	31	48	1.58
5979973--5980002	11	2.8	11	95	5	53	26	0	0	73	0.84
5980117--5980142	13	2.0	13	100	0	52	23	0	0	76	0.78
5981684--5981736	27	2.0	27	84	0	70	32	16	22	28	1.96
5981718--5981787	28	2.5	28	78	0	77	35	25	20	18	1.95
5986340--5986368	2	15.0	2	92	7	51	48	0	0	51	1.00
5995445--5995496	24	2.1	24	85	3	68	53	5	9	30	1.57
5995709--5995761	25	2.1	25	86	6	72	20	5	33	39	1.76
5995878--5995974	43	2.3	43	82	5	108	22	5	30	41	1.76
6002080--6002110	16	2.0	15	93	6	53	22	0	19	58	1.40
6004875--6004902	1	28.0	1	100	0	56	100	0	0	0	0.00
6006463--6006522	19	3.1	19	73	22	52	53	0	0	46	1.00
6006524--6006747	21	10.9	21	73	9	158	46	4	1	47	1.31
6006791--6007011	29	7.7	29	68	13	75	40	3	0	55	1.22
6006831--6006864	9	3.9	9	84	7	52	26	0	0	73	0.83
6006831--6006864	8	4.0	8	88	11	50	26	0	0	73	0.83
6006831--6006864	17	2.0	17	94	0	59	26	0	0	73	0.83
6006886--6007027	57	2.6	54	73	18	136	40	4	0	53	1.27
6006918--6006956	18	2.1	19	85	4	53	46	2	0	51	1.14
6006987--6007030	18	2.5	17	88	7	61	43	2	0	54	1.12
6006934--6007089	75	2.1	76	80	6	174	41	5	1	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6007132--6007169	18	2.1	18	90	0	58	44	0	0	55	0.99
6007298--6007370	22	3.4	22	69	19	64	42	2	1	53	1.23
6010338--6010479	73	1.9	71	84	8	187	49	3	8	38	1.50
6010877--6010915	19	2.1	19	95	0	69	43	7	0	48	1.31
6010866--6010921	19	3.2	18	80	11	64	41	5	0	53	1.24
6011100--6011235	68	2.0	67	89	1	209	43	22	8	26	1.80
6014809--6015074	131	2.0	133	85	2	358	31	13	18	36	1.90
6017378--6017420	11	3.8	11	81	6	50	74	2	2	20	1.04
6019953--6020008	22	2.5	22	82	0	67	35	12	17	33	1.88
6019967--6020301	104	3.2	103	75	8	338	32	14	15	37	1.88
6020361--6020406	23	2.0	23	91	0	74	41	19	15	23	1.89
6020667--6020709	22	2.0	22	85	0	59	34	18	13	32	1.90
6020681--6020739	23	2.6	22	78	5	55	35	11	16	35	1.86
6021232--6021290	26	2.3	26	96	0	109	25	15	20	38	1.91
6021176--6021322	67	2.2	67	83	0	177	31	16	14	37	1.89
6027778--6027858	38	2.1	39	83	2	101	29	7	22	40	1.81
6028104--6028136	6	5.7	6	85	7	50	3	0	15	81	0.80
6028098--6028136	16	2.4	16	91	4	60	2	0	15	82	0.79
6030210--6030272	26	2.5	25	82	10	74	38	15	19	26	1.92
6030781--6030819	15	2.5	16	83	4	53	12	2	2	82	0.89
6035157--6035311	48	3.2	48	85	2	195	34	19	12	34	1.89
6038216--6038257	10	4.3	10	81	6	59	85	0	11	2	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6038214--6038258	24	1.9	24	90	4	74	82	0	13	4	0.82
6038216--6038260	21	2.2	20	82	17	58	84	0	13	2	0.72
6039772--6039822	22	2.3	21	77	9	57	31	17	13	37	1.89
6039858--6040199	149	2.3	148	79	4	389	32	11	18	37	1.86
6043204--6043238	13	2.5	13	90	9	52	8	5	8	77	1.13
6049356--6049411	28	2.0	29	82	10	71	55	28	5	10	1.56
6052225--6052298	22	3.5	21	72	17	73	40	2	1	55	1.22
6053111--6053311	102	2.0	101	94	2	350	47	6	0	44	1.36
6052989--6053442	228	2.0	230	84	6	591	44	6	2	46	1.42
6053213--6053444	126	1.8	130	83	6	312	43	6	2	47	1.41
6059933--6060364	221	2.0	220	79	7	482	36	11	15	35	1.84
6066150--6066199	25	2.0	25	92	0	82	30	20	0	50	1.49
6067853--6067894	11	3.8	11	81	6	50	0	14	2	83	0.75
6067855--6067894	6	7.2	6	78	16	50	0	15	2	82	0.77
6067855--6067894	17	2.4	16	88	8	62	0	15	2	82	0.77
6069087--6069130	22	2.0	22	86	4	63	59	4	2	34	1.30
6071545--6071669	63	2.0	63	84	3	162	28	17	16	37	1.91
6072491--6072942	148	3.1	148	99	0	886	34	21	16	27	1.95
6087422--6087459	16	2.4	16	82	8	51	28	0	5	65	1.14
6093754--6093791	19	2.1	19	95	5	69	31	15	7	44	1.75
6096137--6096183	16	3.0	16	84	12	62	25	2	23	48	1.62
6096124--6096174	15	3.4	14	82	15	57	27	0	21	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096932--6097102	50	3.6	49	79	12	180	33	15	15	35	1.89
6097014--6097097	41	2.0	41	93	0	141	32	14	16	36	1.89
6098587--6098796	110	1.9	114	83	6	275	35	18	14	31	1.91
6100010--6100038	3	9.7	3	100	0	58	31	0	0	68	0.89
6100458--6100499	21	2.0	21	85	0	57	19	0	16	64	1.30
6100868--6100906	20	2.0	20	90	10	62	20	2	0	76	0.90
6110431--6110604	95	1.8	94	90	1	276	44	14	14	25	1.84
6112066--6112292	116	2.0	116	82	1	276	15	21	18	44	1.87
6112364--6112676	114	2.8	113	79	3	353	17	19	17	45	1.85
6112868--6112946	26	3.0	24	75	17	68	18	30	22	27	1.98
6113111--6113140	11	2.8	11	95	5	53	10	6	3	80	1.01
6114068--6114122	27	1.9	28	85	10	76	78	0	3	18	0.90
6114089--6114121	10	3.2	10	95	4	57	81	0	0	18	0.68
6114089--6114121	11	3.1	11	91	8	59	81	0	0	18	0.68
6114082--6114121	19	2.1	18	86	9	53	82	0	0	17	0.67
6115252--6115295	20	2.1	21	84	12	56	70	4	6	18	1.27
6124375--6124427	8	6.6	8	77	0	52	26	3	16	52	1.61
6124372--6124438	16	4.2	16	80	3	73	29	4	19	46	1.69
6124372--6124425	24	2.2	24	86	0	72	27	3	18	50	1.64
6124375--6124437	32	2.0	32	84	6	83	26	4	19	49	1.68
6125167--6125208	13	3.2	13	100	0	84	38	28	0	33	1.58
6125446--6125499	26	2.1	26	92	0	90	27	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6131070--6131120	16	3.1	16	72	10	57	52	0	7	39	1.30
6131413--6131451	19	2.1	19	85	9	53	41	5	5	48	1.47
6131753--6131797	18	2.3	21	81	14	60	64	6	2	26	1.30
6136057--6136116	18	3.2	18	77	9	57	43	5	11	40	1.63
6136056--6136103	20	2.4	20	89	0	69	45	2	10	41	1.50
6148610--6148642	15	2.2	15	100	0	66	12	18	12	57	1.64
6152639--6152676	15	2.7	14	84	8	51	71	0	15	13	1.16
6153161--6153279	46	2.6	46	78	5	141	33	11	13	41	1.81
6153486--6153571	44	2.0	44	88	4	129	33	11	11	43	1.77
6153434--6153663	99	2.3	98	82	8	263	30	9	13	46	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91