genome.fa.s201.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  68  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292673--11292756	26	3.2	26	89	3	132	90	9	0	0	0.45
11292673--11292756	9	9.6	9	88	8	120	90	9	0	0	0.45
11292673--11292748	1	76.0	1	84	0	98	92	7	0	0	0.40
11293016--11293058	18	2.4	18	84	7	52	27	0	6	65	1.18
11296856--11296889	6	5.7	6	96	0	59	38	0	0	61	0.96
11298063--11298095	5	6.8	5	93	6	59	18	0	0	81	0.68
11298064--11298094	14	2.2	14	100	0	62	19	0	0	80	0.71
11298054--11298140	29	3.1	27	76	12	81	11	8	2	78	1.05
11298316--11298365	21	2.3	22	89	3	75	36	6	8	50	1.57
11299426--11299470	19	2.3	20	81	11	58	60	0	6	33	1.23
11299503--11299568	24	2.8	24	75	11	64	65	6	4	24	1.35
11299772--11299837	21	3.3	19	70	19	53	36	4	6	53	1.46
11299796--11299833	20	1.9	20	88	0	58	39	5	5	50	1.48
11299983--11300074	27	3.5	25	76	15	87	39	1	3	56	1.23
11299984--11300086	28	3.9	25	77	15	84	39	0	3	55	1.25
11299984--11300085	53	1.9	53	82	7	127	40	0	3	54	1.25
11302923--11302952	2	15.0	2	100	0	60	50	0	0	50	1.00
11305902--11306032	61	2.1	61	83	5	158	32	12	5	49	1.64
11305782--11306092	136	2.3	132	82	9	371	33	11	6	48	1.64
11306126--11306164	15	2.6	15	84	11	53	76	2	0	20	0.90
11306191--11306231	3	13.7	3	100	0	82	68	0	0	31	0.90
11306194--11306248	6	8.3	7	92	8	57	69	1	0	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11307048--11307131	17	5.2	17	69	18	63	67	1	4	26	1.17
11307066--11307149	25	3.4	23	87	9	105	61	1	5	30	1.27
11307050--11307159	24	4.6	25	79	9	104	63	1	4	30	1.24
11307794--11307828	15	2.3	15	90	0	52	28	22	20	28	1.98
11314298--11314355	27	2.1	27	81	12	66	39	1	0	58	1.08
11314638--11314680	19	2.2	20	84	12	54	48	0	0	51	1.00
11314985--11315063	36	2.2	36	82	4	99	21	12	17	48	1.80
11316153--11316341	100	1.9	100	89	0	297	33	15	14	35	1.88
11319148--11319214	18	3.7	18	73	18	68	56	4	1	37	1.29
11319253--11319291	18	2.2	18	90	0	60	58	5	5	30	1.41
11319438--11319548	29	3.8	29	75	8	100	31	2	7	58	1.39
11319505--11319544	21	1.9	21	94	0	71	37	5	2	55	1.35
11319668--11319748	40	2.1	37	84	6	99	25	1	3	69	1.13
11325396--11325437	23	1.9	23	85	9	61	54	0	7	38	1.28
11325933--11325984	5	10.4	5	95	0	77	53	0	5	40	1.25
11327188--11327235	21	2.3	22	82	13	57	20	0	6	72	1.05
11327281--11327323	23	1.9	22	85	4	59	34	0	4	60	1.17
11327288--11327349	8	8.1	8	73	21	53	30	0	1	67	1.00
11327311--11327464	29	5.2	29	70	19	90	24	5	1	69	1.16
11327313--11327362	8	6.1	8	83	4	55	26	0	0	74	0.83
11327309--11327366	18	3.4	18	81	13	77	25	0	0	74	0.82
11327356--11327458	32	3.3	30	80	14	111	23	7	1	66	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11327729--11327782	25	2.2	25	90	6	83	42	5	16	35	1.72
11328352--11328413	11	5.9	11	83	9	60	14	4	1	79	0.98
11328351--11328428	6	12.7	6	71	23	56	15	5	1	78	0.99
11328351--11328405	17	3.4	17	73	12	62	14	5	1	78	1.02
11328353--11328413	10	5.9	10	79	12	61	14	4	1	78	0.99
11328454--11328730	62	4.7	57	81	12	328	46	5	12	34	1.66
11328436--11328744	121	2.6	119	83	8	378	47	7	11	33	1.68
11328766--11328791	13	2.0	13	100	0	52	15	0	7	76	0.99
11330444--11330470	13	2.1	13	100	0	54	44	7	0	48	1.31
11331293--11331346	16	3.4	16	80	12	67	18	1	1	77	0.95
11331296--11331343	25	1.9	25	84	16	64	16	2	2	79	0.93
11332353--11332413	7	9.0	7	73	7	54	26	4	29	39	1.77
11333503--11333539	19	1.9	20	88	5	58	5	13	0	81	0.86
11346011--11346237	112	2.0	112	95	0	411	49	18	5	26	1.68
11347163--11347204	20	2.0	20	86	9	57	50	28	2	19	1.60
11349972--11350029	25	2.3	25	93	3	98	29	1	3	65	1.19
11349980--11350023	13	3.5	13	79	17	56	31	0	4	63	1.14
11352681--11352710	5	5.8	5	92	7	51	16	0	3	80	0.85
11354622--11354701	28	2.9	27	80	12	74	62	3	3	30	1.30
11354787--11354852	30	2.2	30	89	5	98	51	0	6	42	1.26
11366227--11366262	17	2.1	17	94	0	63	25	5	13	55	1.60
11366842--11366879	18	2.0	20	85	10	53	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11371745--11371793	3	16.7	3	95	4	91	67	0	32	0	0.91
11372724--11372804	18	4.4	18	75	3	63	67	6	1	24	1.20
11372941--11372965	10	2.5	10	100	0	50	68	8	0	24	1.16
11372982--11373027	18	2.6	18	82	6	58	67	6	0	26	1.15
11372807--11373197	200	1.9	199	86	7	551	56	7	3	32	1.44
11373168--11373269	20	5.3	20	69	12	70	62	4	0	31	1.23
11373170--11373269	19	5.3	19	80	9	80	63	5	1	31	1.23
11373170--11373243	20	4.0	18	81	15	73	62	5	1	31	1.26
11373111--11373244	68	2.0	68	83	5	173	58	5	2	32	1.38
11373245--11373296	26	2.0	27	85	11	72	65	5	1	26	1.26
11373372--11373418	11	4.2	12	81	13	55	29	6	0	63	1.19
11373551--11373585	10	3.6	10	92	7	54	25	0	2	71	1.00
11374484--11374541	19	2.9	19	74	16	55	55	0	0	44	0.99
11374500--11374553	21	2.6	21	85	5	65	51	0	0	48	1.00
11374581--11374647	32	2.1	32	85	0	89	50	0	1	47	1.10
11375448--11375491	21	2.1	20	84	16	54	54	4	0	40	1.21
11376066--11376109	17	2.6	17	82	3	54	56	9	0	34	1.31
11377677--11377710	18	1.9	17	88	5	50	67	5	2	23	1.26
11378571--11378609	19	2.0	20	85	5	53	74	2	12	10	1.17
11378883--11378932	23	2.3	22	86	6	75	28	10	0	62	1.27
11378888--11378931	23	2.0	22	95	4	79	27	11	0	61	1.30
11380336--11380379	17	2.6	17	85	3	54	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11381350--11381402	22	2.4	22	93	6	90	47	0	0	52	1.00
11383591--11383642	16	3.3	16	76	15	54	26	0	23	50	1.50
11385655--11385892	131	1.8	131	80	5	293	40	18	16	24	1.90
11385800--11385968	87	1.9	87	93	0	293	39	16	19	24	1.91
11385964--11386030	22	3.0	22	77	18	68	31	17	22	28	1.97
11385659--11386110	218	2.1	218	83	2	577	39	17	18	24	1.92
11386098--11386161	22	2.8	22	81	9	67	29	20	21	28	1.98
11385885--11386258	131	2.8	132	84	5	488	39	16	19	24	1.92
11386330--11386379	22	2.2	23	89	3	75	40	14	16	30	1.87
11386330--11387074	131	5.7	131	79	3	640	40	15	17	26	1.90
11386578--11386637	22	2.7	22	82	5	77	26	16	25	31	1.96
11386847--11386888	22	1.9	22	90	0	66	33	16	21	28	1.95
11386330--11387068	262	2.8	261	79	3	795	39	15	17	26	1.90
11386971--11387024	22	2.5	22	84	0	72	29	20	25	24	1.99
11387015--11387206	88	2.2	88	84	5	237	39	19	20	21	1.93
11387114--11387323	110	1.9	110	81	3	253	41	18	17	22	1.90
11395780--11395830	16	3.2	16	86	5	68	23	1	21	52	1.57
11395773--11395908	64	2.2	62	82	4	157	16	0	25	56	1.45
11395870--11395977	13	8.2	13	71	17	57	14	0	30	54	1.41
11395855--11395935	36	2.2	36	86	4	110	11	0	28	60	1.31
11395868--11395948	21	3.9	21	76	9	67	12	0	28	59	1.34
11395875--11395916	22	1.9	22	90	0	66	9	0	30	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11395939--11395993	16	3.6	16	73	14	53	21	0	29	49	1.50
11395906--11395993	29	3.1	29	80	7	101	19	0	29	51	1.47
11396346--11396427	3	28.3	3	79	11	91	28	1	2	68	1.10
11398428--11398500	34	2.1	34	82	7	94	54	0	0	45	0.99
11398454--11398530	16	4.5	17	72	22	63	51	0	0	48	1.00
11398454--11398542	16	5.2	16	70	19	56	52	0	1	46	1.07
11398447--11398558	16	6.6	16	68	17	55	57	0	0	41	1.05
11398574--11398660	18	4.8	18	75	18	74	41	2	0	56	1.12
11399573--11399683	10	10.8	10	67	16	57	62	6	0	30	1.26
11399551--11399615	26	2.5	27	77	7	71	55	4	1	38	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91