genome.fa.s201.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  23  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4041109--4041316	104	2.0	104	92	0	344	47	14	8	29	1.74
4047145--4047191	2	23.5	2	95	0	85	2	0	48	48	1.13
4047223--4047273	2	25.5	2	87	0	66	49	7	0	43	1.32
4047223--4047273	16	3.2	16	91	0	75	49	7	0	43	1.32
4047292--4047319	4	7.0	4	100	0	56	25	0	25	50	1.50
4051151--4051182	10	3.3	10	95	4	57	9	0	0	90	0.45
4051144--4051182	19	2.1	19	90	4	62	10	2	0	87	0.65
4051144--4051189	17	2.6	17	86	10	58	13	2	0	84	0.71
4053171--4053226	29	1.9	29	85	7	78	42	23	19	14	1.88
4055226--4055265	9	4.4	9	100	0	80	35	25	10	30	1.88
4061123--4061182	30	1.9	30	86	10	84	46	5	1	46	1.34
4068763--4069187	210	2.0	211	85	5	574	36	11	13	37	1.82
4082093--4082152	29	2.0	30	90	9	95	50	0	0	50	1.00
4082109--4082165	29	2.0	29	86	6	82	56	0	0	43	0.99
4083493--4083533	20	2.2	18	86	8	55	48	2	0	48	1.14
4083689--4083745	24	2.4	24	82	2	62	52	3	1	42	1.28
4083951--4083993	14	3.1	14	75	0	50	79	6	13	0	0.93
4083954--4083992	20	2.0	20	89	0	60	76	7	15	0	0.99
4088087--4088130	23	2.0	22	86	4	61	11	11	4	72	1.25
4091518--4091565	23	2.2	21	82	14	53	60	0	0	39	0.97
4091587--4091640	25	2.2	24	83	12	65	51	0	0	48	1.00
4091590--4091649	28	2.0	31	87	9	90	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4091607--4091669	20	3.3	19	80	8	65	53	0	1	44	1.10
4091918--4091945	1	28.0	1	100	0	56	100	0	0	0	0.00
4095104--4095161	25	2.2	27	87	6	84	67	0	0	32	0.91
4104617--4104942	56	5.7	57	93	6	547	34	12	7	45	1.70
4104617--4104944	115	2.9	115	93	5	551	34	12	7	45	1.69
4104617--4104943	114	2.9	114	94	5	556	34	12	7	45	1.69
4105008--4105065	23	2.5	22	78	8	62	82	5	1	10	0.89
4105002--4105065	31	2.1	30	82	2	74	82	4	1	10	0.88
4106014--4106113	38	2.6	39	75	12	93	63	7	0	30	1.21
4106058--4106116	13	4.5	13	73	26	54	62	6	0	30	1.21
4106057--4106116	28	2.2	27	82	11	77	63	6	0	30	1.20
4105934--4106099	58	2.9	58	78	10	155	64	3	3	28	1.25
4106300--4106377	1	78.0	1	84	0	93	1	0	7	91	0.49
4106291--4106377	8	10.8	8	83	9	97	1	0	9	89	0.53
4106291--4106377	15	5.4	16	84	12	115	1	0	9	89	0.53
4106290--4106377	31	2.7	31	85	7	113	2	0	9	88	0.59
4106291--4106377	39	2.3	39	87	2	122	1	0	9	89	0.53
4106384--4106944	161	3.5	160	93	5	917	37	22	18	21	1.94
4106384--4106944	41	14.0	39	94	5	871	37	22	18	21	1.94
4108187--4108224	13	3.0	13	84	7	51	0	18	0	81	0.69
4111416--4111686	58	4.7	56	81	12	316	35	12	7	44	1.70
4112632--4112769	25	5.3	26	72	10	86	66	3	3	26	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4112681--4112803	35	3.6	35	73	16	91	65	4	0	28	1.18
4112717--4112818	12	8.3	12	69	20	52	64	6	0	28	1.19
4114333--4114361	2	14.5	2	100	0	58	51	0	0	48	1.00
4116524--4116577	8	6.9	8	82	18	69	75	0	12	11	1.04
4116521--4116595	8	8.8	9	77	16	63	73	0	16	10	1.10
4116534--4116575	7	5.7	7	88	8	57	78	0	11	9	0.96
4116524--4116577	15	3.5	15	85	7	72	75	0	12	11	1.04
4117603--4118242	40	15.9	40	83	12	748	23	17	20	38	1.93
4117603--4118242	282	2.3	281	87	7	926	23	17	20	38	1.93
4118250--4118309	8	7.8	8	85	14	90	86	13	0	0	0.57
4118251--4118309	15	4.1	14	89	6	91	88	11	0	0	0.53
4118250--4118309	23	2.6	23	94	2	102	86	13	0	0	0.57
4118251--4118309	1	59.0	1	75	0	55	88	11	0	0	0.53
4119614--4119647	13	2.5	14	95	4	61	14	0	5	79	0.91
4119738--4119828	27	3.2	27	62	14	65	43	6	14	35	1.71
4119728--4120072	59	5.7	57	84	12	419	45	8	13	33	1.73
4122357--4122381	2	12.5	2	100	0	50	52	0	0	48	1.00
4124863--4124930	21	2.8	25	71	26	58	45	4	5	44	1.48
4124863--4124941	24	3.4	23	76	18	74	43	5	6	45	1.51
4125076--4125148	30	2.4	30	71	8	76	49	1	5	43	1.34
4134453--4134496	22	2.0	23	81	4	54	50	0	6	43	1.29
4137541--4137567	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4144670--4144715	24	1.9	24	95	0	83	17	34	10	36	1.85
4148141--4148195	19	2.9	19	79	15	60	9	0	14	76	1.02
4149789--4149832	12	3.6	12	81	3	52	27	0	4	68	1.09
4150843--4150915	29	2.5	28	84	8	85	19	8	53	19	1.69
4150984--4151060	9	8.9	9	72	12	63	22	1	3	72	1.08
4150977--4151058	17	4.8	17	77	12	71	23	1	3	71	1.08
4150998--4151061	34	1.9	34	87	9	96	21	1	3	73	1.06
4155037--4155095	24	2.6	23	77	17	61	64	1	0	33	1.04
4158657--4158694	8	4.3	9	87	12	53	81	0	18	0	0.69
4158657--4158694	17	2.2	17	90	9	60	81	0	18	0	0.69
4158657--4158709	9	5.6	9	76	10	52	83	0	16	0	0.66
4158981--4159113	50	2.7	50	82	6	155	42	14	11	31	1.81
4158972--4159344	48	7.6	49	79	7	271	42	17	12	27	1.85
4158981--4159163	100	1.8	100	82	9	239	42	15	12	28	1.84
4159321--4159372	25	2.1	25	92	0	86	46	17	9	26	1.79
4159346--4159866	48	10.8	48	82	4	586	39	17	11	31	1.85
4159196--4159517	170	1.9	168	86	2	457	40	19	11	28	1.86
4159346--4159866	97	5.4	96	81	6	545	39	17	11	31	1.85
4159346--4159907	145	3.9	145	83	5	665	39	18	11	30	1.86
4166345--4166371	2	13.5	2	100	0	54	48	0	0	51	1.00
4167832--4167895	30	2.2	29	83	10	78	62	3	7	26	1.38
4168880--4168908	9	3.3	9	95	4	51	0	6	0	93	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4172146--4172175	8	3.8	8	90	0	51	0	6	0	93	0.35
4172146--4172180	11	3.1	11	91	4	52	0	8	0	91	0.42
4172146--4172178	16	2.1	16	100	0	66	0	6	0	93	0.33
4180775--4180856	27	3.0	27	98	0	155	26	19	10	42	1.84
4185289--4185761	48	9.8	48	80	5	472	32	11	16	39	1.85
4185249--4185749	97	5.2	96	79	5	440	31	10	18	38	1.85
4185763--4186226	48	9.6	48	73	9	311	28	12	17	42	1.85
4185590--4185929	169	2.0	170	83	4	436	29	11	18	40	1.86
4185908--4186060	52	3.0	52	78	11	163	26	13	16	43	1.85
4185860--4186060	101	2.0	100	81	4	235	26	12	16	44	1.84
4186058--4186194	49	2.7	50	77	12	147	30	11	16	41	1.83
4186190--4186290	44	2.3	44	81	6	116	28	10	12	47	1.76
4194772--4194800	11	2.7	11	94	5	51	62	0	0	37	0.96
4195715--4195826	56	2.0	56	98	0	215	23	18	16	41	1.89
4197328--4197355	1	28.0	1	100	0	56	100	0	0	0	0.00
4201161--4201222	31	2.0	31	100	0	124	54	0	3	41	1.16
4201999--4202211	105	2.0	105	96	0	390	36	5	9	48	1.59
4204005--4204075	22	3.0	23	71	24	58	50	0	0	49	1.00
4204006--4204043	20	1.9	19	89	5	58	52	0	0	47	1.00
4204051--4204121	28	2.7	26	83	14	83	53	0	1	45	1.09
4221753--4221790	6	6.2	6	87	6	58	21	0	0	78	0.74
4221754--4221790	13	2.9	13	96	4	67	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4221753--4221792	19	2.1	19	90	0	62	22	0	0	77	0.77
4221756--4221794	13	3.1	13	82	17	55	23	0	0	76	0.78
4230590--4230641	23	2.4	21	78	18	54	51	0	0	48	1.00
4230675--4230739	22	3.0	22	72	18	73	61	0	1	36	1.05
4230823--4230857	18	2.1	16	89	10	52	62	0	5	31	1.18
4231061--4231406	115	3.0	115	98	0	674	35	23	17	23	1.95
4235571--4235624	24	2.4	24	85	11	71	33	0	0	66	0.92
4235583--4235624	12	3.6	12	77	3	50	35	0	0	64	0.94
4237371--4237413	18	2.4	18	84	7	52	76	9	0	13	1.01
4237369--4237412	15	2.9	14	81	18	52	77	11	0	11	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91