genome.fa.s201.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  38  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6506818--6506861	15	2.9	14	81	18	52	6	9	9	75	1.20
6506985--6507057	23	3.2	23	82	1	94	23	24	17	34	1.96
6506997--6507064	23	3.0	23	82	0	91	22	23	19	35	1.96
6507201--6507729	32	16.2	32	70	14	221	31	15	18	34	1.92
6507227--6507633	163	2.5	163	93	1	681	32	14	17	34	1.91
6507375--6507540	65	2.5	64	84	6	199	31	14	18	35	1.91
6507382--6507639	66	3.9	67	77	9	199	32	13	17	35	1.90
6507360--6507638	98	2.9	98	79	7	248	33	14	17	34	1.90
6507592--6507699	34	3.2	33	78	15	91	29	17	18	34	1.94
6508215--6508247	15	2.3	15	94	5	59	6	6	0	87	0.65
6508209--6508260	21	2.5	20	90	9	79	7	5	0	86	0.70
6508214--6508258	15	2.9	14	84	15	54	6	6	0	86	0.70
6509175--6509203	14	2.0	15	93	6	51	0	17	0	82	0.66
6509894--6509949	28	2.1	26	86	6	76	0	14	3	82	0.81
6511618--6511661	4	11.0	4	85	0	61	45	0	25	29	1.54
6513680--6513714	17	2.0	18	94	5	63	20	0	0	80	0.72
6513704--6513812	53	2.1	53	82	6	132	42	6	10	41	1.64
6513976--6514014	13	2.9	13	81	7	51	30	0	15	53	1.42
6513957--6514017	27	2.3	26	80	8	70	31	4	14	49	1.65
6516108--6516204	15	6.8	15	72	20	75	35	1	1	62	1.09
6516113--6516154	12	3.3	12	87	12	50	45	0	0	54	0.99
6516155--6516200	16	2.9	16	83	3	58	28	2	2	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6524538--6524580	3	14.3	3	95	0	77	65	2	0	32	1.06
6524573--6524615	21	2.0	22	82	13	54	79	2	6	11	1.02
6526299--6526334	18	1.9	18	88	5	54	22	0	2	75	0.94
6526318--6526351	15	2.3	15	90	10	52	17	5	0	76	0.98
6528621--6528684	21	3.0	21	72	17	60	34	7	23	34	1.84
6532886--6532920	17	2.1	16	89	5	52	40	2	0	57	1.14
6537153--6537214	3	20.7	3	93	0	106	66	1	1	30	1.11
6537336--6537409	33	2.3	33	78	2	78	48	6	20	24	1.73
6537457--6538014	65	8.6	63	72	9	218	44	12	21	22	1.84
6537579--6538051	64	7.3	64	72	8	224	45	11	20	22	1.83
6537562--6538051	129	3.8	128	72	8	368	44	12	20	22	1.84
6538156--6538192	10	3.9	10	79	13	51	59	16	0	24	1.37
6538157--6538199	18	2.4	18	92	3	70	55	16	2	25	1.53
6538206--6538261	18	3.2	17	84	5	76	30	12	12	44	1.79
6538205--6538253	17	2.8	18	87	6	66	30	12	16	40	1.85
6543717--6543757	15	2.7	15	84	3	55	75	2	2	19	1.03
6544034--6544075	19	2.2	20	83	8	52	40	9	7	42	1.65
6544546--6544610	3	21.7	3	93	0	112	66	1	1	30	1.10
6545419--6545456	15	2.4	16	91	4	60	73	0	26	0	0.83
6546045--6546203	64	2.6	62	82	8	175	38	13	8	38	1.75
6546239--6546320	4	19.2	4	75	19	53	73	2	3	20	1.11
6546244--6546316	15	4.8	15	77	15	78	73	2	2	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6547240--6547280	21	1.9	22	85	14	59	53	4	7	34	1.50
6547293--6547415	3	39.7	3	73	13	65	66	1	3	28	1.16
6547290--6547452	21	8.4	20	70	19	78	69	1	3	24	1.14
6547330--6547418	22	4.0	22	73	20	69	70	1	2	25	1.05
6547340--6547400	26	2.3	27	80	8	70	70	1	1	26	1.06
6547339--6547448	6	17.3	6	73	17	64	73	1	2	21	1.05
6547678--6547853	88	2.0	88	87	2	255	39	21	15	23	1.92
6547636--6547875	41	5.7	41	82	8	223	37	20	16	25	1.93
6548872--6548924	8	6.8	8	87	12	74	13	7	0	79	0.93
6548870--6548925	9	6.8	9	82	15	59	12	7	0	80	0.90
6548872--6548924	15	3.4	16	82	10	65	13	7	0	79	0.93
6548871--6548925	24	2.3	24	93	0	92	12	7	0	80	0.91
6552375--6552402	14	2.0	14	100	0	56	35	28	7	28	1.84
6555867--6556029	59	2.7	59	80	8	186	36	12	6	44	1.69
6555867--6556019	61	2.5	62	84	6	190	39	13	5	41	1.68
6556054--6556112	13	4.3	14	76	21	54	76	0	3	20	0.93
6556060--6556126	21	3.3	19	76	19	64	77	0	2	19	0.89
6556054--6556116	15	4.4	15	74	20	55	76	0	3	20	0.93
6556064--6556131	33	2.0	33	83	13	86	76	0	2	20	0.92
6557189--6557270	6	13.0	6	74	15	60	76	3	1	18	0.99
6557155--6557216	15	4.0	15	75	8	52	67	1	3	27	1.15
6557208--6557270	13	5.2	12	79	5	65	77	4	1	15	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6558040--6558071	17	2.0	17	88	11	50	59	3	6	31	1.38
6558151--6558188	15	2.5	15	86	0	58	7	26	0	65	1.19
6561473--6561505	15	2.2	16	89	10	52	75	6	0	18	1.00
6562712--6562801	44	2.0	44	84	0	117	41	16	15	26	1.88
6562941--6562993	23	2.3	23	81	18	67	75	5	0	18	0.99
6564680--6564751	19	3.5	19	68	23	56	59	8	4	27	1.45
6564671--6564757	43	2.0	43	97	0	165	51	9	5	33	1.57
6566035--6566069	18	2.0	18	94	5	63	14	11	0	74	1.08
6566358--6566407	15	3.5	14	83	10	66	18	16	2	64	1.39
6568119--6568278	3	54.7	3	72	16	113	30	2	6	61	1.34
6573732--6573785	20	2.7	21	80	11	60	79	5	11	3	1.02
6574089--6574131	11	3.6	11	84	9	50	83	11	4	0	0.78
6574056--6574122	29	2.3	29	76	5	73	79	7	7	5	1.07
6574945--6575314	120	3.1	120	77	5	286	21	25	11	41	1.87
6575017--6575416	119	3.3	121	77	5	339	23	24	10	41	1.85
6575173--6575474	121	2.5	120	79	2	300	23	23	9	43	1.82
6575803--6575832	3	10.0	3	100	0	60	33	0	0	66	0.92
6575914--6575955	3	15.3	3	81	18	56	28	0	0	71	0.86
6575914--6575955	5	7.7	6	89	10	56	28	0	0	71	0.86
6576431--6576470	10	3.9	10	83	6	53	10	7	25	57	1.57
6579089--6579144	7	7.6	7	80	4	58	32	12	23	32	1.92
6580799--6580855	19	3.1	19	80	14	59	66	8	1	22	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6580799--6580855	9	6.2	10	76	15	61	66	8	1	22	1.29
6585667--6586505	186	4.5	187	82	3	972	35	12	11	40	1.80
6587184--6587232	25	2.0	25	87	0	71	24	6	22	46	1.74
6588885--6588929	21	2.1	21	84	8	56	28	2	6	62	1.33
6590563--6591348	305	2.6	306	82	4	829	35	15	13	35	1.86
6592147--6592188	22	1.9	22	95	0	75	23	19	4	52	1.65
6595581--6595605	2	12.5	2	100	0	50	52	48	0	0	1.00
6600575--6600606	15	2.1	15	94	0	55	53	0	43	3	1.16
6602645--6602717	27	2.6	28	76	14	78	53	1	1	43	1.17
6602760--6602799	18	2.2	19	86	13	57	40	0	0	60	0.97
6602771--6602826	14	3.9	14	72	9	58	42	0	1	55	1.10
6602765--6602824	30	2.0	30	90	0	93	45	0	1	53	1.10
6602767--6602819	18	2.9	18	78	10	54	43	0	1	54	1.11
6603829--6603860	15	2.1	16	94	5	57	28	0	31	40	1.57
6607463--6607503	21	2.0	21	90	4	66	19	12	12	56	1.67
6612092--6612256	81	2.0	82	91	1	269	43	6	34	15	1.72
6612797--6612830	12	2.8	12	83	16	52	26	0	0	73	0.83
6613729--6613790	15	3.9	15	73	10	52	24	6	11	58	1.56
6616569--6616652	10	8.7	10	71	15	52	29	8	8	53	1.60
6616592--6616638	19	2.5	19	85	0	58	29	10	8	51	1.66
6617331--6617376	21	2.1	21	88	4	65	54	0	4	41	1.20
6621063--6621422	147	2.3	151	88	9	521	37	11	26	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6621382--6621670	143	2.0	143	97	0	551	35	11	28	23	1.90
6623242--6623288	15	3.3	15	77	17	55	63	0	0	36	0.94
6624619--6624665	18	2.6	18	83	12	69	55	6	6	31	1.51
6625766--6625807	21	2.0	21	86	4	59	73	2	0	23	0.94
6627922--6628033	30	3.6	30	75	9	84	49	10	1	38	1.48
6631143--6631191	21	2.4	21	83	10	57	30	2	0	67	1.02
6633139--6633175	2	19.0	2	94	5	67	51	0	0	48	1.00
6634242--6634275	18	1.9	17	88	5	50	38	5	0	55	1.24
6634272--6634326	28	2.0	27	85	7	74	29	1	3	65	1.20
6637141--6637355	115	1.9	116	82	2	272	40	15	14	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91