genome.fa.s201.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  21  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648950--3649334	132	3.0	130	81	5	442	42	6	11	39	1.66
3648964--3649335	128	2.9	130	81	6	427	43	6	11	39	1.66
3651222--3651290	31	2.2	31	97	0	129	49	2	1	46	1.25
3651354--3651400	13	3.6	13	75	8	51	25	0	2	72	0.96
3658527--3658872	133	2.6	129	77	9	328	41	6	11	40	1.67
3661075--3661113	19	2.1	19	90	0	60	46	2	2	48	1.29
3663393--3663423	2	15.5	2	100	0	62	51	0	0	48	1.00
3664788--3664815	6	4.7	6	100	0	56	32	0	0	67	0.91
3666023--3666052	16	1.9	16	93	6	53	33	0	3	63	1.11
3668254--3668286	16	1.9	17	88	11	50	66	6	0	27	1.15
3669206--3669235	15	1.9	16	93	6	53	56	0	10	33	1.32
3669215--3669250	17	2.1	18	89	5	56	63	0	8	27	1.23
3669329--3669614	129	2.2	127	81	7	328	44	5	9	41	1.58
3669763--3669896	61	2.2	60	86	2	178	41	2	16	38	1.64
3670332--3670710	128	2.9	130	81	8	420	42	7	10	40	1.66
3672605--3672664	18	3.6	18	68	23	58	48	0	1	50	1.11
3672592--3672717	31	4.0	31	82	12	132	50	0	1	48	1.10
3672729--3672776	13	3.7	13	75	8	53	25	0	2	72	0.95
3672729--3672779	26	2.0	26	84	7	68	27	0	1	70	0.98
3674786--3674990	61	3.4	61	78	9	197	35	4	19	41	1.71
3675125--3675375	128	2.0	129	84	2	335	43	6	9	40	1.63
3675495--3675655	61	2.6	60	78	11	175	39	2	14	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3678065--3678099	16	2.2	16	89	0	52	42	8	14	34	1.76
3684548--3684883	130	2.6	130	78	9	335	41	6	11	40	1.67
3687111--3687149	19	2.1	19	90	0	60	46	2	2	48	1.29
3699273--3701982	357	7.6	356	85	1	3185	36	11	14	36	1.83
3699285--3701982	356	7.6	357	84	2	3151	36	11	14	36	1.83
3703445--3703485	17	2.5	17	88	4	57	21	0	24	53	1.46
3703756--3703781	3	8.7	3	100	0	52	69	0	0	30	0.89
3703888--3703942	16	3.6	15	75	20	60	76	5	0	18	0.97
3704923--3704964	14	3.1	14	86	3	59	7	2	4	85	0.80
3715085--3715121	18	2.1	18	94	0	65	48	5	10	35	1.61
3716247--3716418	73	2.4	73	86	3	238	35	11	9	43	1.73
3716926--3717164	120	2.0	120	95	1	435	35	14	20	29	1.92
3718136--3718251	61	1.9	62	92	1	198	47	13	18	19	1.82
3719254--3719289	18	2.0	18	100	0	72	44	11	11	33	1.75
3720750--3720794	23	1.9	24	90	4	74	77	0	2	20	0.87
3721162--3721524	181	2.0	181	98	0	708	34	19	23	23	1.97
3722246--3722302	24	2.4	25	75	16	66	42	1	5	50	1.35
3724835--3724877	19	2.3	19	100	0	86	23	0	4	72	1.04
3726466--3726513	20	2.4	20	86	6	62	16	16	2	64	1.39
3726468--3726513	19	2.3	20	85	3	58	17	15	2	65	1.37
3726880--3726926	10	4.5	11	81	10	53	17	0	4	78	0.90
3726899--3726969	20	3.6	20	81	5	74	23	2	4	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3726899--3726970	14	5.5	13	72	18	51	23	2	4	69	1.19
3727165--3727271	56	1.9	56	90	3	171	43	17	6	31	1.75
3727128--3728304	49	24.0	50	78	9	1002	39	20	10	28	1.87
3727125--3728301	243	4.8	240	81	8	1113	39	20	10	28	1.87
3727131--3728304	141	8.0	142	75	12	712	39	21	10	28	1.87
3727275--3728304	345	3.0	339	82	6	1199	38	21	11	29	1.88
3730017--3730058	18	2.3	18	100	0	84	30	21	9	38	1.85
3741287--3741335	20	2.4	21	86	3	64	12	18	6	63	1.48
3741286--3741336	21	2.4	21	87	6	68	11	17	5	64	1.45
3741725--3741796	20	3.7	20	83	9	85	19	2	9	68	1.31
3743852--3743880	1	29.0	1	100	0	58	100	0	0	0	0.00
3744911--3744949	17	2.3	17	86	8	53	53	0	0	46	1.00
3745149--3745183	8	4.4	8	100	0	70	11	0	0	88	0.51
3745225--3745249	6	4.2	6	100	0	50	16	0	0	84	0.63
3745312--3745351	21	1.9	21	85	10	55	47	5	0	47	1.24
3754981--3755022	19	2.3	18	87	4	57	19	2	2	76	1.01
3754980--3755029	26	1.9	26	88	8	75	20	2	2	76	0.99
3755252--3755291	11	3.8	11	81	18	50	67	17	0	15	1.23
3755656--3755689	10	3.3	10	91	4	50	52	8	2	35	1.47
3757119--3757720	156	3.8	156	95	2	1069	38	18	14	28	1.90
3757749--3757778	15	1.9	15	93	6	51	80	6	0	13	0.91
3757749--3757779	16	1.9	16	93	0	53	80	6	0	12	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3758060--3758103	19	2.3	19	84	0	52	27	22	27	22	1.99
3758165--3758237	31	2.4	31	90	4	112	27	24	26	21	2.00
3758553--3758585	11	2.9	12	86	13	52	78	0	0	21	0.75
3758685--3758796	44	2.5	44	73	17	106	59	5	0	33	1.26
3758812--3758845	13	2.7	12	86	13	50	88	0	0	11	0.52
3758880--3758956	20	3.8	20	89	1	100	20	31	31	16	1.95
3759058--3759143	1	86.0	1	80	0	91	4	0	5	89	0.59
3759045--3759144	44	2.3	44	91	1	157	6	0	7	87	0.69
3759045--3759141	14	6.8	14	83	9	124	6	0	6	87	0.66
3759151--3759554	40	10.0	40	89	6	584	38	21	18	22	1.93
3759151--3759554	122	3.3	120	90	5	609	38	21	18	22	1.93
3759151--3759554	162	2.5	162	94	2	713	38	21	18	22	1.93
3760746--3760784	8	4.9	8	93	0	69	10	15	0	74	1.07
3764466--3765063	156	3.8	156	95	2	1072	37	18	14	29	1.90
3765069--3765139	16	4.5	16	77	11	60	80	7	2	9	1.00
3765115--3765139	1	25.0	1	100	0	50	100	0	0	0	0.00
3765411--3765455	19	2.4	19	88	0	63	24	22	31	22	1.99
3765517--3765589	31	2.4	31	90	4	112	27	24	26	21	2.00
3765905--3765938	11	2.9	12	86	8	52	79	0	0	20	0.73
3766164--3766205	6	7.7	6	82	17	56	88	0	0	11	0.53
3766165--3766199	15	2.3	15	100	0	70	88	0	0	11	0.51
3766164--3766206	21	2.1	20	95	4	77	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3766241--3766305	20	3.2	20	91	0	94	20	30	32	16	1.95
3766327--3766363	2	18.5	2	100	0	74	51	0	0	48	1.00
3778540--3778635	48	2.0	48	85	4	131	22	7	23	45	1.77
3780702--3780746	2	23.5	2	86	8	67	0	46	2	51	1.13
3785854--3785895	3	13.3	3	90	9	66	66	0	2	30	1.04
3786443--3786472	6	5.0	6	91	0	51	30	33	20	16	1.94
3787171--3787222	24	2.1	26	89	7	81	40	0	0	59	0.97
3788953--3789015	27	2.4	27	91	2	101	61	0	0	38	0.96
3791230--3791545	159	2.0	158	96	0	578	35	9	24	30	1.87
3806992--3807069	31	2.5	31	72	6	77	61	0	0	38	0.96
3807074--3807144	22	3.0	23	80	15	83	39	0	0	60	0.97
3807074--3807158	24	3.7	22	74	21	61	41	1	0	57	1.06
3808133--3808161	14	2.0	15	93	6	51	51	0	0	48	1.00
3816923--3816958	18	2.0	18	100	0	72	44	16	5	33	1.71
3825787--3825822	11	3.0	13	80	19	51	38	0	0	61	0.96
3825787--3825820	12	2.8	12	90	4	50	38	0	0	61	0.96
3826077--3826135	29	2.0	30	90	6	93	37	5	1	55	1.32
3826080--3826144	30	2.2	29	83	8	78	38	4	1	55	1.30
3826120--3826179	30	2.0	30	87	6	86	38	1	0	60	1.07
3828104--3828150	13	3.6	13	75	11	51	44	0	0	55	0.99
3828345--3828401	25	2.2	26	87	9	82	36	1	1	59	1.18
3828909--3828988	38	2.1	36	84	11	99	45	1	2	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3832815--3832849	12	2.9	12	88	12	54	0	25	5	68	1.11
3835283--3835310	1	28.0	1	100	0	56	100	0	0	0	0.00
3836988--3837032	19	2.4	19	100	0	90	46	20	17	15	1.84
3837370--3837433	29	2.2	29	91	0	110	32	9	34	23	1.87
3851698--3851731	17	2.0	17	94	0	59	38	11	8	41	1.73
3854891--3854916	13	2.0	13	100	0	52	61	7	0	30	1.24
3859712--3859779	3	22.7	3	90	0	64	20	0	11	67	1.21
3859711--3859779	9	7.7	9	88	0	75	20	0	13	66	1.24
3861862--3861910	24	2.0	24	96	0	89	38	0	0	61	0.96
3861904--3861950	21	2.2	21	96	0	85	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91