genome.fa.s201.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  7  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063243--1063286	13	3.0	16	80	16	51	52	0	2	45	1.13
1066485--1066509	12	2.1	12	100	0	50	32	0	8	60	1.26
1067278--1067312	15	2.2	16	95	5	63	25	0	0	74	0.82
1067278--1067325	18	2.7	18	84	9	55	25	0	2	72	0.95
1067676--1067734	13	5.3	11	71	18	50	45	1	0	52	1.10
1067801--1067825	13	1.9	13	100	0	50	24	0	0	76	0.80
1072767--1072800	13	2.7	13	86	4	52	0	11	0	88	0.52
1076402--1076474	33	2.2	33	100	0	146	39	5	42	12	1.66
1077028--1077098	17	4.2	16	73	7	61	53	28	1	16	1.52
1077028--1077084	16	3.4	16	73	7	51	50	29	1	17	1.56
1077120--1077149	14	2.1	14	100	0	60	53	33	0	13	1.40
1082104--1082133	16	1.9	16	93	6	53	0	6	0	93	0.35
1084821--1084870	11	4.4	11	75	9	55	38	2	0	60	1.09
1088428--1088481	20	2.7	20	94	5	92	22	0	44	33	1.53
1092524--1092670	75	2.0	75	82	2	179	25	25	17	30	1.97
1101214--1101258	17	2.8	15	81	15	54	33	2	8	55	1.43
1101214--1101258	16	2.8	17	86	6	58	33	2	8	55	1.43
1102771--1102801	2	15.5	2	100	0	62	51	0	0	48	1.00
1111321--1111355	16	2.2	16	90	10	54	40	0	0	60	0.97
1111384--1111444	27	2.2	28	85	2	79	47	6	1	44	1.39
1114009--1114056	24	2.0	24	87	0	69	31	0	0	68	0.90
1114021--1114054	15	2.3	15	89	0	50	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114120--1115092	486	2.0	486	100	0	1946	35	14	19	31	1.91
1115350--1115409	30	2.0	29	83	3	75	51	1	1	45	1.21
1116958--1117010	27	2.0	27	88	0	79	28	15	18	37	1.91
1117220--1117269	11	4.5	11	77	5	55	40	2	10	48	1.48
1120380--1120430	18	2.7	19	72	6	50	49	1	0	49	1.12
1120498--1120543	22	2.1	22	88	8	67	32	0	2	65	1.05
1120488--1120556	13	5.6	12	76	10	52	34	0	1	63	1.03
1120515--1120592	24	3.0	25	74	14	61	33	3	3	58	1.34
1121347--1121388	12	3.5	12	81	9	50	38	0	0	61	0.96
1121982--1122017	17	2.1	18	89	5	56	52	0	0	47	1.00
1125722--1125801	39	2.1	39	90	4	126	22	21	11	45	1.83
1134023--1134132	41	2.8	39	78	15	111	40	0	5	53	1.24
1133993--1134136	73	2.0	74	80	6	168	39	0	5	54	1.29
1134071--1134158	37	2.3	38	80	9	99	44	0	5	50	1.26
1134154--1134197	5	8.0	6	85	10	51	65	0	0	34	0.93
1134129--1134173	24	1.9	23	82	13	56	55	0	0	44	0.99
1134159--1134197	16	2.5	15	91	8	60	66	0	0	33	0.92
1134696--1134780	31	2.8	29	76	16	84	41	1	3	54	1.25
1141093--1141164	35	2.1	35	86	0	99	30	9	18	41	1.82
1143087--1143155	23	2.9	23	79	12	59	57	2	1	37	1.22
1144397--1144421	12	2.1	12	100	0	50	8	8	28	56	1.57
1146630--1146656	1	27.0	1	100	0	54	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1149485--1149736	124	2.0	124	100	0	504	50	16	5	27	1.67
1150211--1150259	6	8.2	6	93	0	53	0	14	32	53	1.41
1150217--1150259	12	3.6	12	87	0	59	0	11	32	55	1.36
1152160--1152200	17	2.3	17	87	8	55	36	0	0	63	0.95
1152224--1152271	22	2.2	20	79	13	51	54	4	0	41	1.20
1161199--1161237	20	2.0	20	90	5	62	5	12	10	71	1.28
1161525--1161564	2	20.0	2	100	0	80	50	0	0	50	1.00
1173343--1173375	16	2.1	16	100	0	66	39	0	18	42	1.50
1177135--1177185	25	2.0	25	96	0	93	39	33	3	23	1.73
1184306--1184402	48	2.0	48	95	0	176	35	14	6	44	1.70
1191830--1191856	12	2.2	12	100	0	54	37	18	7	37	1.79
1199723--1199782	24	2.5	25	75	5	61	55	0	1	43	1.10
1199954--1199993	20	2.1	18	86	9	53	10	7	0	82	0.84
1201859--1202017	66	2.4	66	79	8	164	38	6	9	45	1.62
1201832--1202005	22	7.9	22	79	5	145	36	5	9	48	1.58
1202436--1202548	22	5.2	21	83	9	102	38	9	6	46	1.62
1202445--1202592	44	3.4	43	83	7	165	38	6	7	47	1.58
1202497--1202560	11	5.8	11	73	0	56	40	3	6	50	1.43
1202475--1202605	22	6.0	22	83	7	131	40	4	7	47	1.53
1202436--1202745	66	4.6	65	72	13	198	40	7	5	46	1.56
1202604--1202676	22	3.3	22	86	0	92	46	4	1	47	1.30
1202637--1202748	22	5.1	22	78	6	111	39	9	5	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202613--1202748	44	3.1	44	79	4	141	41	8	4	45	1.55
1202917--1202974	22	2.6	22	88	0	80	39	13	5	41	1.67
1203595--1203677	11	7.5	11	71	10	53	37	9	6	46	1.61
1203593--1203938	22	16.2	22	71	14	145	33	7	6	52	1.54
1203590--1203710	44	2.8	44	82	7	165	33	9	4	51	1.57
1203776--1203887	11	9.8	11	68	15	50	32	5	4	58	1.41
1203817--1203932	43	2.7	43	78	10	119	36	4	4	55	1.40
1203817--1203981	22	7.6	22	76	9	81	37	5	4	52	1.44
1205492--1205533	16	2.6	17	81	11	52	57	2	2	38	1.25
1209272--1209322	25	2.0	25	96	0	93	25	29	9	35	1.88
1212756--1212786	15	2.1	15	100	0	62	35	38	6	19	1.77
1225834--1225873	18	2.2	18	90	0	62	32	7	22	37	1.82
1228200--1228255	16	3.5	16	83	7	69	69	0	30	0	0.89
1229155--1229201	18	2.5	18	83	16	60	48	0	2	48	1.13
1230002--1230042	21	1.9	22	85	5	57	65	0	0	34	0.93
1230519--1230566	12	3.9	12	75	5	51	45	0	2	52	1.12
1230627--1230677	24	2.1	24	85	0	66	23	0	1	74	0.92
1230640--1230682	16	2.7	16	86	10	61	23	0	0	76	0.78
1230640--1230680	22	1.9	21	90	5	64	21	0	0	78	0.76
1240347--1240372	2	13.0	2	100	0	52	50	0	0	50	1.00
1240660--1240694	18	1.9	18	88	0	52	62	0	11	25	1.28
1241711--1241736	7	3.7	7	100	0	52	0	26	11	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1242775--1242807	6	5.5	6	100	0	66	45	0	0	54	0.99
1242906--1242960	11	4.9	11	75	18	51	49	1	0	49	1.11
1243463--1243504	22	2.0	21	81	13	50	52	2	0	45	1.13
1243571--1243639	26	2.7	24	76	12	75	56	4	2	36	1.34
1250148--1250200	27	2.0	27	81	7	63	45	1	3	49	1.31
1250695--1250751	18	3.1	18	87	12	73	50	15	0	33	1.44
1250705--1250751	18	2.5	19	93	6	87	55	17	0	27	1.42
1251025--1251070	24	2.0	24	83	8	60	60	2	0	36	1.09
1252207--1252240	17	2.1	17	88	5	52	58	0	2	38	1.13
1253343--1253404	16	4.1	15	76	21	67	32	1	1	64	1.13
1253350--1253415	29	2.3	29	83	0	78	33	3	1	62	1.20
1253818--1253849	15	2.1	15	100	0	64	68	0	0	31	0.90
1256342--1256401	31	2.0	29	87	6	84	55	1	0	43	1.10
1256458--1256500	13	3.3	13	80	0	50	41	0	0	58	0.98
1259583--1259659	25	3.3	25	67	24	60	53	2	0	44	1.14
1260841--1260872	6	5.3	6	96	0	55	15	12	68	3	1.32
1261835--1261909	35	2.2	35	85	2	107	28	8	18	45	1.78
1262162--1263829	556	3.0	556	99	0	3273	28	18	19	33	1.95
1267941--1267965	6	4.2	6	100	0	50	16	0	0	84	0.63
1268098--1268154	29	2.0	29	80	12	66	38	1	1	57	1.19
1268177--1268220	20	2.2	20	80	4	54	50	0	0	50	1.00
1270257--1270299	18	2.4	18	100	0	86	4	44	6	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1274487--1274516	15	2.0	15	100	0	60	26	13	6	53	1.64
1276403--1276427	13	1.9	13	100	0	50	56	12	0	32	1.36
1277984--1278020	15	2.4	15	90	4	56	43	5	27	24	1.76
1278349--1278389	21	1.9	22	85	5	57	14	29	17	39	1.89
1279269--1279323	22	2.3	24	82	17	62	50	1	1	45	1.22
1280274--1280306	15	2.1	16	94	5	59	39	0	6	54	1.25
1280250--1280525	137	2.0	137	89	1	419	39	6	9	44	1.63
1282461--1282485	7	3.6	7	100	0	50	84	0	0	16	0.63
1283906--1283976	34	2.1	34	86	5	99	50	8	7	33	1.60
1283918--1283991	34	2.1	34	85	2	94	52	5	5	36	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91