genome.fa.s201.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  83  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14037964--14038018	15	3.6	14	80	20	65	45	1	9	43	1.46
14037972--14038020	15	3.1	15	83	11	71	46	2	12	38	1.53
14040175--14040206	2	16.0	2	100	0	64	0	50	0	50	1.00
14040206--14040238	2	17.0	2	93	6	59	51	0	0	48	1.00
14042871--14043002	66	2.0	66	80	5	151	28	29	13	28	1.94
14045122--14045146	2	12.5	2	100	0	50	0	52	0	48	1.00
14045385--14045442	20	2.9	21	75	12	59	32	0	1	65	1.03
14045430--14045498	31	2.3	29	74	13	68	46	0	2	50	1.16
14045822--14045877	8	6.6	9	72	24	50	62	0	3	33	1.12
14047230--14047269	13	2.9	14	82	17	57	27	0	0	72	0.85
14049221--14049335	59	1.9	59	81	6	135	32	16	6	44	1.74
14049329--14049456	63	2.0	64	83	7	165	27	15	10	46	1.79
14049932--14050075	62	2.3	61	86	8	204	43	16	8	31	1.78
14050118--14050407	158	1.8	158	82	4	370	32	13	16	37	1.88
14051428--14051536	3	38.7	3	73	21	78	60	4	0	33	1.23
14051427--14051498	5	13.8	5	81	13	83	61	1	1	36	1.14
14051427--14051536	41	2.7	42	86	9	147	60	4	0	34	1.24
14052615--14052644	3	10.0	3	100	0	60	33	0	0	66	0.92
14054870--14054952	42	2.0	42	95	0	130	28	15	22	32	1.95
14057294--14057513	59	3.7	59	86	5	291	39	10	4	45	1.59
14057294--14057512	119	1.8	120	89	2	343	39	10	4	45	1.59
14057294--14057514	60	3.7	59	85	3	282	38	10	4	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14057562--14057594	15	2.2	15	89	10	50	81	0	0	18	0.68
14057530--14057593	18	3.7	18	70	16	55	76	1	4	17	1.03
14058161--14058212	26	2.1	25	86	10	72	51	13	3	30	1.58
14058497--14058548	21	2.4	21	93	3	86	73	7	9	9	1.27
14058545--14058631	21	4.1	21	76	8	72	72	2	4	20	1.14
14058547--14058612	21	3.2	21	81	8	82	69	3	4	22	1.20
14058547--14058631	41	2.1	41	82	8	102	71	2	4	21	1.15
14058603--14058759	4	38.0	4	68	17	56	66	3	3	26	1.24
14058620--14058754	15	8.7	15	67	21	66	64	3	2	28	1.25
14058567--14058665	53	1.9	49	84	11	128	69	2	4	24	1.16
14058580--14058673	25	3.8	25	70	17	63	67	3	4	25	1.24
14058735--14058806	32	2.3	31	76	7	74	72	4	4	19	1.18
14058989--14059245	41	6.1	41	87	5	293	34	23	19	22	1.96
14060507--14060541	16	2.2	16	90	10	54	11	17	0	71	1.14
14060491--14060540	20	2.7	19	84	9	59	14	16	0	70	1.18
14060507--14060539	15	2.1	16	88	5	50	12	15	0	72	1.12
14064459--14064497	16	2.4	16	86	4	51	41	0	7	51	1.31
14064518--14064555	15	2.4	16	86	8	51	55	0	2	42	1.14
14064430--14064652	61	3.7	59	85	7	308	39	9	4	45	1.59
14064430--14064649	120	1.8	119	88	5	338	40	10	4	45	1.58
14064677--14064751	23	3.3	23	76	14	75	77	2	6	13	1.07
14064667--14064758	6	14.7	6	73	17	64	78	2	5	14	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14064699--14064771	33	2.2	33	81	13	80	79	2	2	15	0.96
14065666--14065744	21	3.7	21	76	6	70	70	2	5	21	1.18
14065698--14065825	27	4.7	25	68	18	62	67	3	3	25	1.20
14065724--14065882	4	39.0	4	67	17	69	66	3	2	27	1.21
14065777--14065881	45	2.4	44	80	12	110	66	4	1	26	1.22
14065894--14065954	28	2.1	30	90	6	99	78	3	0	18	0.88
14065897--14065954	6	9.5	6	83	12	66	77	3	0	18	0.91
14068202--14068449	125	2.0	125	100	0	496	33	16	13	35	1.89
14075780--14075805	11	2.4	11	100	0	52	19	0	0	80	0.71
14076358--14076422	25	2.5	26	70	14	62	43	0	1	55	1.09
14076414--14076459	24	1.9	24	82	8	58	50	2	2	45	1.26
14077677--14077762	31	2.8	31	89	3	122	34	8	4	52	1.52
14077678--14077774	30	3.2	30	88	2	131	37	7	5	50	1.52
14077719--14077783	30	2.2	30	85	0	85	36	4	4	53	1.42
14078966--14079008	23	1.9	22	85	4	59	30	4	4	60	1.37
14079414--14079469	14	3.9	14	77	13	53	53	1	7	37	1.39
14079837--14079995	81	2.0	81	93	0	273	39	3	13	43	1.62
14085261--14085302	2	21.0	2	100	0	84	50	0	0	50	1.00
14091498--14091556	30	2.0	30	86	6	84	40	0	1	57	1.09
14091501--14091587	37	2.3	38	82	7	99	43	1	1	54	1.15
14091507--14091560	16	3.6	15	78	9	65	44	0	0	55	0.99
14091553--14091612	16	3.8	16	78	10	61	48	3	1	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14092018--14092078	21	2.8	20	82	9	68	49	0	0	50	1.00
14097492--14097556	29	2.2	31	83	5	80	47	4	3	44	1.39
14098078--14098112	2	18.0	2	94	5	63	51	0	0	48	1.00
14099388--14099443	29	1.9	29	88	0	85	48	10	5	35	1.61
14100727--14100759	2	16.5	2	100	0	66	51	0	0	48	1.00
14100759--14100807	2	24.5	2	100	0	98	51	0	48	0	1.00
14102186--14102241	26	2.2	26	83	0	67	17	23	28	30	1.97
14102306--14102357	13	3.9	13	80	9	52	3	19	0	76	0.93
14102787--14102811	13	1.9	13	100	0	50	16	0	20	64	1.30
14103159--14103198	19	2.2	19	95	4	73	15	0	5	80	0.88
14103172--14103205	14	2.3	15	90	5	52	17	0	2	79	0.86
14103290--14103323	16	2.2	16	90	10	54	82	0	2	14	0.79
14103342--14103384	21	2.1	21	86	4	61	74	0	25	0	0.82
14113819--14113848	1	30.0	1	93	0	51	96	0	0	3	0.21
14114290--14114695	89	4.6	88	77	8	351	17	22	16	43	1.88
14114291--14114695	178	2.3	174	78	4	418	17	22	16	43	1.87
14115188--14115218	3	10.7	3	93	6	55	35	0	0	64	0.94
14116257--14116301	21	2.1	21	83	0	54	75	2	22	0	0.91
14116639--14116679	21	1.9	21	85	5	55	53	7	0	39	1.29
14117271--14117320	22	2.3	22	79	6	57	36	2	0	62	1.07
14119160--14119199	2	20.0	2	100	0	80	50	0	50	0	1.00
14121456--14121524	5	12.4	5	77	19	66	20	1	1	76	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14121457--14121569	6	19.0	6	73	13	67	21	1	1	75	0.99
14121468--14121558	38	2.5	36	83	5	103	21	2	2	73	1.05
14121425--14121550	51	2.4	53	75	11	125	19	6	1	73	1.13
14121648--14121691	21	2.0	22	91	4	72	22	4	4	68	1.27
14122533--14122709	12	13.8	12	70	21	69	18	3	2	75	1.07
14122533--14122583	25	2.0	26	88	3	77	19	0	3	76	0.94
14122533--14122584	4	12.8	4	81	4	59	19	0	3	76	0.93
14122536--14122605	21	3.2	22	80	17	83	22	0	5	71	1.07
14122607--14122704	6	16.7	6	73	23	84	15	4	1	79	0.93
14122628--14122709	34	2.5	31	79	14	87	15	4	1	78	0.99
14122615--14122709	9	10.4	9	70	15	54	15	4	1	78	0.95
14122550--14122709	64	2.5	64	80	12	159	18	3	2	75	1.06
14122735--14123118	59	6.5	57	83	9	445	45	7	11	35	1.68
14122700--14123118	120	3.5	115	84	7	529	46	6	11	35	1.66
14131705--14132096	59	6.6	57	84	10	504	34	13	8	44	1.73
14131890--14131978	27	3.2	27	63	20	65	37	13	6	42	1.71
14131705--14132096	180	2.2	174	89	7	576	34	13	8	44	1.73
14131705--14132109	116	3.4	116	86	8	557	34	12	8	44	1.73
14132140--14132168	10	2.7	11	89	10	51	82	0	0	17	0.66
14132125--14132173	24	2.1	23	81	11	55	75	0	6	18	1.00
14132664--14132704	19	2.1	19	86	4	55	17	26	34	21	1.95
14133150--14133183	17	1.9	18	88	5	52	79	2	2	14	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14133161--14133291	70	1.9	69	81	9	160	64	5	1	29	1.25
14133263--14133316	9	5.5	10	81	18	53	61	7	0	31	1.24
14135691--14135773	8	9.9	8	78	11	78	83	1	6	9	0.87
14135692--14135783	24	3.6	24	83	8	94	83	1	6	8	0.85
14135691--14135783	1	93.0	1	70	0	51	83	1	6	8	0.84
14135692--14135781	33	2.7	32	86	6	117	83	1	6	8	0.86
14136796--14137242	41	10.8	41	86	4	578	24	17	20	37	1.94
14136796--14137242	83	5.4	82	86	4	580	24	17	20	37	1.94
14136796--14137243	165	2.7	164	87	5	609	24	17	20	37	1.94
14137226--14137262	19	1.9	19	88	0	56	27	21	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91