genome.fa.s201.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  48  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7744345--7744382	20	1.9	20	94	0	67	31	0	7	60	1.25
7744374--7744433	19	3.2	19	71	7	59	48	0	5	46	1.24
7744384--7744442	20	3.1	20	83	11	88	49	0	5	45	1.24
7744929--7744966	19	2.0	20	89	5	60	31	0	0	68	0.90
7744917--7744980	27	2.4	28	70	15	64	43	0	0	56	0.99
7745262--7745291	15	1.9	15	93	6	51	33	0	0	66	0.92
7745282--7745358	29	2.6	29	71	17	68	46	2	2	48	1.29
7746364--7746393	3	10.3	3	92	7	53	33	0	0	66	0.92
7749875--7749906	3	10.7	3	93	0	55	34	3	0	62	1.11
7759068--7759108	3	13.7	3	100	0	82	68	0	0	31	0.90
7761100--7761142	15	2.9	14	80	10	50	69	0	2	27	1.00
7761413--7761462	26	1.9	26	83	0	64	48	26	10	16	1.77
7761531--7761572	19	2.2	19	95	0	75	33	26	14	26	1.94
7766297--7766340	19	2.3	19	100	0	88	40	11	18	29	1.85
7766590--7766623	15	2.3	15	89	0	50	55	0	0	44	0.99
7767088--7767255	84	2.0	84	95	0	300	41	7	11	39	1.70
7777652--7777686	16	2.2	16	89	0	52	37	8	11	42	1.72
7777672--7777708	19	1.9	19	94	0	65	43	2	21	32	1.67
7778382--7778407	13	2.0	13	100	0	52	30	15	0	53	1.42
7782916--7782969	21	2.8	18	76	15	63	20	0	22	57	1.41
7782915--7782980	30	2.2	30	86	0	87	19	1	21	57	1.49
7788242--7788314	34	2.1	34	84	0	92	38	13	4	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7789462--7789488	9	3.0	9	100	0	54	88	0	0	11	0.50
7793500--7793529	10	3.0	10	95	0	51	86	0	10	3	0.67
7795310--7795380	32	2.3	32	85	4	92	40	16	7	35	1.76
7798827--7798868	16	2.6	16	88	3	57	80	0	16	2	0.81
7802913--7802956	22	2.0	22	95	0	79	43	13	11	31	1.80
7806592--7806676	23	3.6	23	91	3	125	40	17	27	15	1.89
7806824--7806867	22	2.0	22	95	0	79	43	13	11	31	1.80
7811568--7811706	74	1.9	73	87	1	206	20	17	19	41	1.90
7813673--7813699	12	2.2	12	100	0	54	40	7	44	7	1.60
7815846--7815880	3	11.7	3	100	0	70	31	34	0	34	1.58
7818524--7818573	26	1.9	26	83	0	64	42	2	6	50	1.38
7821592--7821675	34	2.4	34	73	11	82	45	4	1	48	1.31
7824871--7824914	22	2.0	22	100	0	88	40	13	13	31	1.84
7826480--7826512	12	2.8	12	100	0	66	27	12	27	33	1.92
7831489--7831524	2	18.0	2	100	0	72	50	0	0	50	1.00
7832458--7832798	167	2.1	167	88	3	510	31	15	15	36	1.89
7835715--7835839	62	2.0	62	92	0	205	29	16	16	38	1.90
7841350--7841387	3	12.7	3	89	10	60	31	34	0	34	1.58
7844443--7844496	27	2.0	28	82	10	67	51	12	0	35	1.40
7848397--7848501	55	1.9	55	82	7	133	72	2	6	18	1.19
7848397--7848565	30	5.6	30	75	12	125	72	2	5	19	1.17
7848485--7848556	21	3.3	20	74	14	63	75	2	4	18	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7848452--7848594	45	3.3	44	79	10	134	71	2	6	20	1.18
7848501--7848594	44	2.1	44	84	3	118	70	2	5	22	1.18
7849020--7849083	33	1.9	33	87	0	92	23	23	15	37	1.93
7849208--7849265	22	2.6	22	81	13	73	32	10	20	36	1.87
7849706--7849762	9	6.3	9	77	0	60	42	15	19	22	1.89
7849706--7849762	27	2.1	27	86	0	78	42	15	19	22	1.89
7856973--7857021	18	2.7	18	83	0	62	16	6	4	73	1.19
7857857--7857898	16	2.5	17	81	14	52	45	4	16	33	1.69
7858031--7858065	18	1.9	18	88	11	54	11	8	34	45	1.71
7858133--7858183	13	3.8	14	76	7	52	25	1	23	49	1.61
7858178--7858279	19	5.4	19	82	3	116	16	4	37	41	1.70
7865349--7865471	22	5.6	22	77	7	90	52	5	7	34	1.53
7865401--7865697	81	3.5	82	71	12	190	52	5	7	34	1.51
7865581--7865695	22	5.2	22	81	2	106	53	5	6	35	1.48
7865578--7865697	44	2.7	44	77	2	134	53	5	6	35	1.49
7866017--7866479	22	21.0	22	69	13	103	49	4	9	36	1.56
7866553--7866602	11	4.5	11	79	0	55	50	4	6	40	1.46
7866545--7866867	22	14.3	22	71	9	116	47	7	7	37	1.59
7866739--7866800	11	5.6	11	78	3	63	54	6	1	37	1.36
7866834--7866881	22	2.2	21	85	3	60	47	4	14	33	1.63
7867129--7867205	22	3.5	22	80	7	77	45	7	10	36	1.67
7867267--7867506	22	10.9	22	77	3	151	46	9	6	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7867267--7867503	44	5.4	44	76	7	196	45	9	6	38	1.62
7867245--7867504	66	4.0	65	74	8	197	46	9	6	37	1.63
7867735--7867777	22	2.0	22	85	0	59	46	2	4	46	1.36
7867776--7867834	24	2.6	22	80	15	66	40	13	13	32	1.84
7876154--7876385	115	2.0	115	94	0	410	39	15	10	34	1.81
7881328--7881365	20	1.9	19	89	5	58	36	18	0	44	1.50
7884206--7884243	20	1.9	19	89	5	58	73	15	0	10	1.09
7894384--7894431	16	2.9	17	81	9	55	50	2	0	47	1.12
7894380--7894437	25	2.3	25	77	13	66	50	1	0	48	1.11
7904055--7904125	25	3.0	23	73	8	61	49	1	1	47	1.18
7904078--7904111	17	2.1	17	88	5	52	50	0	0	50	1.00
7904069--7904111	16	2.6	17	78	10	54	48	2	0	48	1.14
7907960--7908000	21	2.0	21	90	0	64	0	26	7	65	1.18
7915099--7915134	6	6.0	6	100	0	72	50	16	33	0	1.46
7917975--7918761	428	1.8	429	97	0	1504	40	11	10	38	1.74
7921535--7921576	13	3.3	12	87	9	57	38	0	9	52	1.34
7921570--7921669	31	3.3	31	78	2	114	32	7	19	42	1.78
7924168--7924270	34	3.1	33	83	6	118	38	15	11	33	1.84
7924302--7924390	33	2.7	32	74	5	79	37	13	13	35	1.84
7927002--7927049	24	2.0	24	100	0	96	45	12	4	37	1.61
7931173--7931209	18	2.1	18	90	5	58	62	0	5	32	1.18
7931341--7931390	10	4.1	12	80	15	50	26	0	2	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7934583--7934689	55	1.9	55	82	0	133	32	19	14	32	1.93
7936053--7936134	43	1.9	43	89	0	128	53	10	17	18	1.72
7937126--7937174	25	2.0	25	87	0	71	42	14	2	40	1.57
7941387--7941419	11	2.8	12	86	13	50	21	0	12	66	1.23
7942912--7942937	12	2.2	12	100	0	52	50	0	7	42	1.31
7945572--7945665	31	3.0	31	90	0	134	35	9	9	45	1.69
7946818--7946851	14	2.4	14	95	0	59	47	8	0	44	1.34
7948705--7948737	2	17.0	2	87	6	50	51	3	0	45	1.16
7951771--7951833	18	3.7	16	82	8	72	14	1	9	74	1.13
7951771--7951833	17	3.7	16	81	10	63	14	1	9	74	1.13
7952452--7952612	84	1.9	84	81	0	196	40	13	12	34	1.81
7952744--7952994	129	1.9	129	98	0	484	32	17	13	36	1.89
7953536--7953562	14	1.9	14	100	0	54	48	14	22	14	1.81
7954888--7954955	19	3.7	18	72	16	68	8	14	2	73	1.19
7956481--7956524	21	2.1	21	95	0	79	50	15	25	9	1.74
7957459--7957558	51	2.0	50	86	2	137	64	5	8	23	1.41
7957890--7957920	2	15.5	2	93	0	53	51	3	0	45	1.17
7958995--7959032	19	2.0	20	84	5	51	47	5	2	44	1.39
7963276--7963322	20	2.4	20	96	3	87	51	10	14	23	1.74
7967796--7967874	39	2.0	39	95	0	140	35	18	12	32	1.89
7969528--7969586	3	19.7	3	92	0	100	62	0	1	35	1.05
7979558--7979597	9	4.4	9	87	9	55	52	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7980210--7980737	260	2.0	265	88	5	788	31	8	6	53	1.57
7997603--7997824	7	34.0	6	72	14	126	46	31	2	18	1.64
7997603--7997743	38	3.7	38	83	8	153	48	31	2	17	1.58
7997606--7997823	13	17.1	13	70	15	127	45	32	2	18	1.64
7997778--7997821	15	3.1	14	84	9	54	50	31	2	15	1.57
7997606--7997744	25	5.3	28	76	14	88	47	32	2	17	1.60
8006106--8006200	34	2.8	34	84	10	115	46	13	4	35	1.63
8009862--8009945	27	3.1	27	96	0	150	36	21	10	30	1.88
8013192--8013244	18	3.1	17	82	12	56	30	1	1	66	1.13
8015525--8015618	17	5.8	16	74	15	77	19	1	31	47	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91