genome.fa.s201.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  32  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5527071--5527139	32	2.1	34	86	5	97	26	7	13	53	1.65
5527194--5527272	23	3.5	23	73	16	76	25	3	15	55	1.56
5530036--5530144	32	3.1	37	76	14	129	29	5	11	54	1.58
5530018--5530147	70	1.9	67	84	7	174	28	6	11	53	1.60
5530139--5530190	19	2.7	19	82	8	61	28	7	7	55	1.56
5530201--5530249	23	2.1	23	85	7	64	30	6	10	53	1.59
5533085--5533140	25	2.2	25	83	0	76	12	5	10	71	1.29
5543271--5543309	15	2.6	15	87	0	51	46	0	0	53	1.00
5543426--5543475	13	3.7	13	84	10	64	34	0	0	66	0.92
5545322--5545419	19	5.2	19	73	0	70	19	6	27	46	1.73
5545322--5545399	38	2.1	37	85	2	102	17	5	28	48	1.68
5550129--5550163	15	2.3	15	90	0	52	80	0	17	2	0.84
5550111--5550163	23	2.3	23	83	6	63	77	0	16	5	0.96
5551710--5551839	36	3.6	36	79	6	138	33	7	13	45	1.71
5551904--5551957	18	3.0	19	76	10	60	31	12	18	37	1.89
5552002--5552047	9	5.1	9	78	0	56	21	32	10	34	1.88
5551999--5552047	18	2.7	18	100	0	98	22	32	10	34	1.88
5552331--5552381	22	2.3	22	82	0	57	41	17	9	31	1.82
5553474--5553557	20	4.2	20	82	0	78	33	8	7	51	1.59
5553477--5553555	40	2.0	40	87	0	113	34	8	7	49	1.62
5553485--5553558	20	3.7	20	85	0	85	35	6	5	52	1.51
5553950--5554057	18	5.9	19	71	22	79	36	4	9	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5553987--5554057	20	3.8	20	74	22	82	38	5	8	47	1.57
5556567--5556607	20	2.0	20	86	9	57	53	2	7	36	1.42
5561542--5561585	14	3.4	14	70	23	51	50	9	0	40	1.34
5561540--5561589	24	2.1	24	100	0	100	52	8	0	40	1.31
5563690--5563730	13	3.2	13	77	16	50	39	0	0	60	0.96
5564803--5564833	2	15.5	2	100	0	62	48	0	0	51	1.00
5564829--5564990	81	2.0	81	95	0	288	20	15	8	56	1.64
5568513--5568556	23	1.9	23	100	0	88	54	13	18	13	1.71
5569182--5569227	18	2.5	19	75	13	51	34	0	0	65	0.93
5569248--5569420	91	1.9	90	81	11	210	41	8	3	47	1.50
5569445--5569689	108	2.3	109	80	7	277	43	12	6	36	1.70
5569443--5569717	109	2.6	108	78	9	262	43	12	6	37	1.69
5572477--5572562	40	2.2	40	82	4	102	39	8	9	43	1.67
5574311--5574349	11	3.5	11	96	0	69	82	0	10	7	0.86
5576886--5576927	18	2.3	19	87	4	59	11	0	42	45	1.41
5579834--5580056	33	6.8	32	73	10	141	26	19	7	47	1.75
5579834--5580057	99	2.3	98	75	10	217	25	19	7	47	1.75
5580365--5580546	45	4.0	46	69	13	137	39	4	9	46	1.58
5580414--5580459	21	2.2	21	92	0	74	34	2	10	52	1.49
5580518--5580571	23	2.4	22	75	6	54	33	1	7	57	1.37
5592263--5592296	17	2.1	16	89	10	52	8	5	29	55	1.54
5592399--5592601	18	10.9	18	72	13	101	15	6	29	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5592516--5592592	20	3.9	19	76	15	68	15	9	29	45	1.77
5592544--5592592	21	2.4	20	83	12	64	16	6	30	46	1.71
5595124--5595333	33	6.5	32	74	7	129	45	10	17	26	1.81
5595186--5595387	32	6.2	32	73	6	156	47	13	14	24	1.81
5596573--5596687	32	3.6	32	75	10	101	14	20	1	63	1.39
5596580--5596660	34	2.4	34	83	10	94	11	18	1	69	1.25
5598644--5598724	13	6.4	13	70	14	53	6	16	2	75	1.11
5598692--5598730	21	2.0	20	85	10	53	7	20	0	71	1.10
5599152--5599190	20	1.9	21	89	5	62	41	5	2	51	1.38
5601061--5601423	186	2.0	184	87	2	521	25	20	13	41	1.88
5602959--5603011	21	2.4	23	81	12	74	20	3	0	75	0.96
5602959--5603017	22	2.7	22	84	7	75	22	5	0	72	1.03
5602959--5603028	22	3.2	22	80	8	72	21	4	1	72	1.09
5603339--5603402	30	2.1	30	100	0	128	32	18	7	40	1.80
5608091--5608301	60	3.5	60	80	2	210	22	29	14	33	1.93
5608849--5609026	3	62.0	3	65	22	71	32	3	6	57	1.41
5608862--5609002	46	2.9	48	77	11	128	34	3	5	56	1.40
5608940--5609026	26	3.5	26	77	15	74	33	3	6	56	1.43
5609865--5609911	5	8.8	5	80	17	51	19	2	0	78	0.85
5609868--5609910	18	2.6	16	80	16	52	20	2	0	76	0.89
5609865--5609911	16	2.9	17	85	14	64	19	2	0	78	0.85
5609902--5609944	17	2.6	16	82	13	52	23	6	0	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5609913--5609954	17	2.4	18	84	7	52	26	4	0	69	1.08
5614576--5614621	18	2.5	19	86	6	60	15	6	23	54	1.64
5614744--5614805	18	3.3	18	72	12	61	24	3	24	48	1.66
5614783--5614830	18	2.6	17	78	12	51	10	6	31	52	1.60
5617007--5617054	23	2.0	25	88	8	73	52	0	4	43	1.20
5618287--5618335	24	2.0	24	88	4	71	36	16	4	42	1.67
5618372--5618436	30	2.3	28	82	17	89	61	0	0	38	0.96
5618357--5618425	18	4.2	17	71	24	51	53	1	1	43	1.18
5621209--5621254	20	2.3	20	88	0	65	71	0	28	0	0.86
5621209--5621253	6	7.2	6	80	9	54	73	0	26	0	0.84
5621403--5621612	107	2.0	106	93	0	339	43	6	6	43	1.57
5621449--5621493	23	2.0	23	82	8	56	53	6	4	35	1.47
5621610--5621665	23	2.4	23	87	0	76	57	1	8	32	1.40
5621630--5621693	19	3.4	19	76	18	62	62	1	1	34	1.14
5622664--5622712	22	2.2	22	85	0	62	42	16	12	28	1.84
5623355--5623388	2	17.0	2	100	0	68	50	0	0	50	1.00
5628450--5628499	18	2.6	19	78	15	59	2	22	2	74	1.03
5631300--5631341	19	2.2	20	83	12	52	11	4	14	69	1.34
5631756--5631785	12	2.6	11	90	10	51	30	0	0	70	0.88
5635221--5635605	145	2.7	145	81	4	420	40	14	14	30	1.86
5636237--5636346	32	3.4	32	74	7	114	49	10	2	37	1.53
5636960--5637004	22	2.1	21	84	8	56	40	2	11	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5637642--5637676	19	1.9	19	88	11	56	31	5	0	62	1.18
5638157--5638289	32	4.1	32	75	12	137	38	2	6	52	1.40
5638151--5638277	64	2.0	64	81	6	152	37	1	7	53	1.38
5638151--5638290	33	4.3	33	72	13	121	37	2	6	54	1.38
5638502--5638544	21	2.1	20	86	4	59	44	2	6	46	1.43
5644328--5644381	21	2.7	20	81	13	67	18	1	1	77	0.95
5654345--5654395	3	16.7	3	91	4	84	31	1	1	64	1.15
5655356--5655428	21	3.7	20	82	12	80	20	2	4	72	1.14
5655389--5655435	21	2.2	21	85	7	60	25	4	4	65	1.29
5657951--5658053	22	4.8	22	69	14	72	44	12	9	33	1.75
5657970--5658034	20	3.1	21	73	8	62	41	15	10	32	1.81
5658113--5658438	18	18.2	18	71	12	129	46	13	12	28	1.79
5658148--5658494	18	19.1	19	72	12	119	47	12	11	27	1.77
5658301--5658438	53	2.6	53	81	6	145	48	13	10	26	1.76
5658113--5658374	35	7.3	35	73	11	113	46	13	12	27	1.79
5658347--5658447	37	2.8	36	77	16	102	48	10	10	29	1.72
5658351--5658462	37	3.1	37	71	19	101	45	9	11	33	1.73
5658479--5658655	43	4.0	44	81	5	162	40	16	9	33	1.81
5658575--5658649	22	3.4	23	68	15	68	38	20	12	29	1.88
5658546--5658627	21	3.9	21	69	15	60	41	18	9	30	1.82
5659559--5659612	15	3.7	15	78	9	67	38	7	20	33	1.80
5659558--5659619	28	2.2	28	91	0	97	40	9	19	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5666392--5666416	2	12.5	2	100	0	50	52	0	0	48	1.00
5667495--5667642	68	2.3	67	84	12	184	48	3	8	39	1.49
5669013--5669075	31	2.0	31	96	0	117	39	11	3	46	1.55
5670168--5670198	16	1.9	16	93	0	53	9	6	0	83	0.79
5670199--5670243	23	2.0	23	86	4	65	46	2	2	48	1.26
5670239--5670263	11	2.3	11	100	0	50	52	0	8	40	1.31
5670814--5670872	27	2.2	27	82	8	68	25	1	1	71	1.05
5671126--5671168	22	2.0	22	86	9	61	2	13	0	83	0.74
5676755--5676822	34	2.0	34	88	0	100	42	17	4	35	1.69
5681135--5681183	21	2.3	21	92	0	80	51	6	0	42	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91