genome.fa.s201.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  78  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13038677--13038710	5	6.8	5	86	0	50	47	0	11	41	1.40
13038674--13038710	10	3.7	10	96	0	65	45	0	10	43	1.39
13038669--13038717	20	2.5	20	80	3	64	42	0	8	48	1.32
13039052--13039096	19	2.4	17	80	20	54	53	4	4	37	1.41
13039058--13039095	19	1.9	20	89	10	60	55	5	5	34	1.45
13040678--13040721	21	2.2	20	87	4	61	47	22	13	15	1.81
13045011--13045047	2	18.5	2	100	0	74	51	0	0	48	1.00
13051722--13051784	32	2.0	32	90	0	99	41	6	9	42	1.63
13057379--13057439	3	20.3	3	100	0	122	32	0	0	67	0.91
13067275--13067308	9	3.6	9	85	14	50	35	0	0	64	0.94
13067527--13067560	9	3.6	9	85	14	50	35	0	0	64	0.94
13067405--13067817	202	2.0	206	91	4	669	35	7	5	52	1.51
13067644--13067980	166	2.0	172	85	5	463	36	5	5	52	1.49
13070773--13070838	31	2.1	32	88	2	98	22	31	6	39	1.79
13071349--13071391	21	2.1	20	91	4	68	46	25	13	13	1.81
13082533--13082596	32	2.0	32	96	0	119	42	6	9	42	1.62
13093307--13093407	47	2.1	47	100	0	202	60	14	9	14	1.59
13094476--13094510	18	2.0	17	88	5	52	68	5	0	25	1.11
13098719--13098778	7	8.1	7	75	17	59	18	0	1	80	0.80
13098721--13098778	12	5.1	12	76	19	61	18	0	1	79	0.82
13099733--13099788	20	2.9	19	77	15	62	55	1	0	42	1.10
13099684--13099790	17	6.1	18	67	26	54	52	2	0	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13099927--13099972	2	23.5	2	91	4	76	47	0	0	52	1.00
13100835--13100909	29	2.5	30	82	6	98	48	0	5	46	1.25
13101449--13101514	29	2.2	29	84	10	80	34	3	9	53	1.48
13101609--13101655	16	2.9	16	78	15	51	27	0	2	70	0.99
13104189--13104260	26	2.8	25	78	15	74	50	9	11	29	1.70
13112798--13112841	21	2.2	20	87	4	61	15	13	22	47	1.81
13115267--13115298	16	2.0	16	93	0	55	53	0	6	40	1.26
13115281--13115328	18	2.6	17	81	18	53	50	0	2	47	1.12
13115317--13115387	29	2.6	27	82	12	83	42	0	1	56	1.08
13116033--13116071	21	2.0	20	90	10	62	46	0	0	53	1.00
13116480--13116550	29	2.4	28	79	11	70	47	1	1	49	1.18
13116532--13116575	21	2.0	23	82	8	56	65	2	0	31	1.05
13116681--13116710	2	15.0	2	100	0	60	50	0	0	50	1.00
13119488--13119555	30	2.3	30	82	10	77	55	26	1	16	1.49
13119612--13119646	14	2.6	14	95	4	63	11	14	37	37	1.82
13120174--13120215	20	2.1	20	90	0	66	42	16	7	33	1.75
13120337--13120409	21	3.5	22	75	9	80	30	2	4	63	1.27
13123652--13123676	13	1.9	13	100	0	50	64	0	0	36	0.94
13129101--13129136	18	2.0	18	100	0	72	55	5	0	38	1.23
13143295--13143338	21	2.1	21	83	4	54	15	13	20	50	1.78
13145629--13145673	20	2.4	18	82	17	56	37	6	4	51	1.49
13145704--13145743	19	2.0	20	86	13	57	37	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13145988--13146062	29	2.6	30	83	10	95	56	9	0	34	1.32
13146487--13146534	18	2.6	17	81	18	53	50	0	2	47	1.12
13146523--13146597	29	2.8	27	82	13	84	38	2	1	57	1.21
13146516--13146597	28	3.0	28	81	13	84	41	2	1	54	1.21
13147694--13147737	21	2.0	21	91	8	70	68	0	0	31	0.90
13156999--13157324	167	2.0	167	85	5	443	53	5	5	34	1.49
13159970--13160013	12	3.1	15	78	21	58	29	0	0	70	0.88
13159983--13160015	12	2.8	12	100	0	66	30	0	0	69	0.88
13165431--13165459	3	9.7	3	100	0	58	68	0	0	31	0.89
13171041--13171104	32	2.0	32	96	0	119	42	9	6	42	1.62
13184521--13184559	19	2.1	19	90	9	62	38	2	0	58	1.12
13184808--13184853	14	3.2	14	82	11	58	56	2	0	41	1.11
13185191--13185225	17	2.1	17	94	0	61	14	22	0	62	1.31
13185173--13185294	60	2.0	60	90	0	190	18	21	6	53	1.67
13187959--13187999	21	2.0	21	90	4	66	36	2	0	60	1.10
13187959--13188008	20	2.5	20	84	9	66	42	2	2	54	1.23
13189522--13189598	29	2.5	30	74	17	79	45	0	3	50	1.20
13189522--13189599	31	2.6	28	71	23	70	44	0	3	51	1.19
13190452--13190524	38	1.9	38	83	10	96	73	2	1	21	1.03
13198097--13198140	21	2.1	21	91	8	72	43	2	0	54	1.12
13198280--13198319	20	2.0	21	90	5	64	27	0	2	70	1.01
13199782--13199814	16	2.1	16	94	0	57	48	15	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13199798--13199997	47	4.2	47	85	5	278	37	20	12	31	1.89
13199732--13199860	63	2.0	66	84	4	174	39	20	9	31	1.84
13199798--13200359	95	5.7	95	78	12	556	37	22	12	27	1.90
13199976--13200018	21	2.0	21	100	0	86	32	23	18	25	1.97
13199834--13200303	163	3.0	165	81	9	470	37	22	13	26	1.91
13199929--13200065	68	2.0	68	89	0	211	35	22	15	27	1.94
13199997--13200367	47	7.7	48	83	6	448	37	23	12	26	1.90
13200001--13200367	144	2.5	145	87	5	512	37	23	12	26	1.90
13200001--13200359	98	3.7	95	84	5	456	38	23	12	25	1.90
13203117--13203147	16	1.9	16	93	0	53	25	0	29	45	1.54
13203552--13203607	21	2.6	21	80	2	58	57	14	0	28	1.38
13203592--13203645	18	3.0	19	76	10	60	70	5	1	22	1.18
13213671--13213724	21	2.5	21	77	19	58	7	0	14	77	0.97
13215334--13215373	20	2.0	21	90	5	64	27	0	2	70	1.01
13216466--13216522	7	7.4	7	74	18	51	15	0	10	73	1.09
13216466--13216522	24	2.4	23	94	2	96	15	0	10	73	1.09
13216464--13216499	16	2.2	16	90	0	54	13	0	11	75	1.06
13216536--13216560	13	1.9	13	100	0	50	20	0	0	80	0.72
13216821--13216877	2	28.5	2	90	0	87	52	3	0	43	1.18
13217476--13217540	32	2.1	32	88	8	98	52	4	10	32	1.57
13219181--13219220	19	2.1	18	86	13	53	37	0	0	62	0.95
13219976--13220022	20	2.5	18	77	12	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13220187--13220239	27	1.9	26	85	11	70	54	0	0	45	0.99
13220199--13220240	21	2.0	21	100	0	84	52	0	0	47	1.00
13219989--13220383	198	2.0	196	92	1	655	45	4	3	47	1.38
13220274--13220348	29	2.5	29	80	4	78	48	5	0	46	1.25
13220809--13220838	15	1.9	16	93	6	53	33	0	13	53	1.40
13221395--13221426	17	1.9	17	93	6	57	43	0	0	56	0.99
13221395--13221451	14	3.9	14	78	17	53	52	0	0	47	1.00
13221365--13221433	29	2.3	31	80	14	83	46	1	0	52	1.09
13230489--13230522	2	17.0	2	87	0	50	55	0	0	44	0.99
13230489--13230522	10	3.4	10	91	0	59	55	0	0	44	0.99
13232644--13232693	18	2.6	19	78	9	57	34	18	4	44	1.68
13233637--13233683	22	2.1	22	84	7	60	59	0	6	34	1.23
13238008--13238042	14	2.5	14	90	0	52	31	0	0	68	0.90
13241349--13241400	18	2.7	20	76	11	63	38	17	1	42	1.60
13243109--13243428	166	1.9	163	84	2	408	40	9	10	40	1.71
13243502--13243657	76	2.1	76	80	2	170	44	17	9	28	1.80
13244721--13244788	36	1.9	35	91	5	111	47	1	5	45	1.36
13246380--13246414	14	2.5	14	90	0	52	31	0	0	68	0.90
13251907--13251979	33	2.2	33	92	0	119	30	19	20	30	1.97
13253732--13253771	10	4.2	10	87	6	57	72	0	0	27	0.85
13254197--13254231	19	1.9	19	88	11	56	37	0	0	62	0.95
13278167--13278226	30	2.0	31	90	3	95	48	3	0	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13278173--13278247	30	2.5	30	78	8	89	46	4	0	49	1.20
13280643--13280707	27	2.4	28	89	2	105	30	3	0	66	1.07
13280651--13280701	13	3.8	13	75	14	59	37	1	0	60	1.08
13289618--13289661	21	2.0	22	86	4	63	63	0	0	36	0.95
13291796--13292187	216	1.8	217	94	1	705	35	9	17	37	1.82
13292014--13292393	186	2.0	185	91	2	609	34	10	17	37	1.83
13297914--13298141	120	1.9	116	82	5	280	25	11	17	46	1.82
13304159--13304213	24	2.3	24	96	3	103	23	23	18	34	1.96
13305200--13305241	13	3.2	13	80	6	50	52	0	0	47	1.00
13305184--13305222	18	2.2	18	86	9	53	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91