genome.fa.s201.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  66  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10944541--10944588	3	16.7	3	78	8	55	66	2	2	29	1.14
10945536--10945578	23	1.9	22	81	13	52	18	9	0	72	1.11
10950395--10950532	63	2.2	63	92	0	222	23	18	7	50	1.73
10953634--10953661	14	2.0	14	100	0	56	50	0	0	50	1.00
10958017--10958063	12	3.7	12	75	25	51	53	2	2	42	1.25
10964015--10964044	2	15.0	2	92	0	51	50	46	0	3	1.18
10969865--10969913	23	2.1	24	84	3	64	46	6	42	4	1.47
10978647--10978843	99	2.0	99	98	0	385	40	18	14	26	1.89
10980371--10980434	25	2.5	25	82	7	67	39	0	1	59	1.07
10982957--10983050	45	2.0	46	85	6	127	34	3	26	36	1.73
10989398--10989438	3	13.7	3	100	0	82	34	0	0	65	0.93
10992870--10992908	20	1.9	21	84	5	53	10	10	12	66	1.44
10993839--10993875	15	2.5	14	91	8	56	72	0	5	21	1.04
10993839--10993881	15	2.7	15	86	13	52	65	0	6	27	1.18
10993854--10993995	52	2.7	51	85	2	176	48	4	16	30	1.65
10999861--10999885	10	2.5	10	100	0	50	40	20	12	28	1.87
11011743--11011786	12	3.3	12	80	20	52	25	4	0	70	1.06
11012062--11012111	13	3.7	13	79	10	55	50	2	0	48	1.12
11012070--11012115	15	3.2	15	78	12	60	52	2	0	45	1.13
11012062--11012115	28	1.9	28	96	0	99	50	1	0	48	1.11
11012413--11012467	16	3.6	16	78	11	53	45	0	1	52	1.11
11013672--11013718	22	2.1	23	84	4	60	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11014969--11015011	20	2.2	19	83	4	50	51	2	2	44	1.27
11016845--11016869	10	2.5	10	100	0	50	60	0	0	40	0.97
11017668--11017711	20	2.2	20	95	0	79	50	0	0	50	1.00
11021415--11021439	13	1.9	13	100	0	50	28	0	0	72	0.86
11022318--11022387	35	2.0	36	85	2	97	38	8	14	38	1.77
11023133--11023181	20	2.4	21	80	12	59	61	6	6	26	1.43
11026016--11026051	6	5.8	6	87	6	54	72	11	0	16	1.12
11026014--11026052	13	3.1	13	88	7	62	74	10	0	15	1.07
11026086--11026412	56	5.7	57	84	8	425	34	13	7	44	1.72
11026434--11026465	16	2.0	17	88	11	50	75	0	6	18	1.01
11026453--11026509	11	5.2	10	77	14	51	78	1	5	14	0.99
11026468--11026509	17	2.5	17	88	0	57	78	2	4	14	1.01
11026892--11026936	20	2.3	19	84	7	54	33	20	22	24	1.97
11027567--11027695	16	8.1	15	71	19	84	62	5	0	31	1.24
11027642--11027700	9	5.9	10	81	18	54	62	6	0	30	1.21
11027807--11027857	24	2.1	24	85	0	66	39	19	11	29	1.87
11028661--11028953	62	4.7	60	70	15	177	41	11	11	34	1.78
11028611--11029417	186	4.4	184	81	7	868	42	10	9	36	1.73
11028851--11029112	62	4.2	62	68	16	173	46	10	9	33	1.70
11028605--11029387	370	2.1	371	84	3	1022	42	10	10	36	1.74
11029279--11029499	122	1.8	122	85	3	311	40	10	12	36	1.78
11037686--11037734	21	2.3	22	78	3	55	18	6	2	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11038177--11038211	9	3.7	9	85	14	52	85	2	0	11	0.69
11038178--11038314	68	2.0	68	83	5	170	55	10	15	18	1.68
11041160--11041204	14	3.2	15	79	20	53	71	0	0	28	0.87
11042140--11042210	8	8.2	8	73	17	54	81	0	12	5	0.85
11042138--11042194	14	4.0	14	72	18	55	80	0	15	3	0.84
11042146--11042191	18	2.6	17	90	6	74	80	0	15	4	0.86
11042140--11042210	18	3.5	19	83	14	65	81	0	12	5	0.85
11042172--11042230	23	2.5	23	83	2	73	81	0	5	13	0.85
11042374--11042687	49	6.6	48	78	6	266	43	16	9	30	1.79
11042364--11042641	98	2.9	97	79	7	323	44	17	8	29	1.79
11042923--11043452	99	5.3	98	80	4	443	42	17	13	26	1.87
11042969--11043437	198	2.4	199	81	3	525	41	19	14	25	1.88
11043497--11043730	75	3.1	75	83	3	272	40	20	14	24	1.90
11043768--11043864	35	2.9	35	83	10	105	46	20	11	21	1.82
11043668--11043919	133	1.9	134	80	4	294	43	20	11	23	1.85
11044242--11044373	35	3.6	37	79	5	119	40	12	12	34	1.81
11045259--11045315	22	2.5	24	82	8	73	5	12	1	80	0.95
11045625--11045661	19	2.0	18	94	5	65	0	13	0	86	0.57
11049580--11049623	8	5.0	8	80	20	52	54	0	0	45	0.99
11049576--11049623	18	2.7	18	96	3	89	54	0	0	45	0.99
11049576--11049630	10	6.0	10	80	18	66	56	0	0	43	0.99
11051358--11051397	18	2.3	17	83	8	53	82	2	15	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11051376--11051434	24	2.4	25	86	11	77	79	1	10	8	1.00
11054107--11054147	11	3.5	11	81	12	55	73	0	0	26	0.84
11067269--11067320	12	4.2	13	79	13	56	17	0	7	75	1.03
11073783--11073880	6	16.7	6	75	2	74	62	6	3	28	1.34
11073916--11073971	24	2.3	25	79	14	64	55	8	0	35	1.31
11074551--11074589	20	2.0	20	94	0	69	28	0	5	66	1.12
11074901--11074997	48	2.0	48	89	0	149	50	1	9	39	1.41
11075451--11075516	25	2.6	25	85	2	87	53	6	4	36	1.46
11077023--11077061	13	3.0	13	80	0	51	53	2	0	43	1.14
11077587--11077615	5	5.8	5	100	0	58	58	20	20	0	1.39
11084571--11084766	33	5.9	33	80	0	212	29	35	16	17	1.93
11086096--11086125	2	15.0	2	92	0	51	53	0	0	46	1.00
11086186--11086219	15	2.3	15	89	0	50	23	26	0	50	1.50
11089718--11089925	100	2.1	100	92	2	348	37	16	15	29	1.90
11092059--11092091	2	16.5	2	93	0	57	54	0	45	0	0.99
11096676--11096722	21	2.3	21	78	10	53	59	0	0	40	0.97
11097326--11097376	20	2.5	20	74	0	57	37	0	0	62	0.95
11097395--11097447	27	2.0	27	88	7	81	52	5	0	41	1.25
11098337--11098383	19	2.6	18	77	9	51	38	0	6	55	1.26
11098900--11098949	19	2.5	21	84	15	70	56	0	0	44	0.99
11098902--11098957	19	2.7	19	86	10	67	55	0	1	42	1.10
11098900--11098965	22	3.1	22	81	14	68	54	0	1	43	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11098918--11099025	30	3.5	30	74	11	76	50	0	1	47	1.11
11098956--11098996	20	2.0	21	85	9	57	46	0	2	51	1.14
11098964--11099027	30	2.3	29	85	15	84	50	0	1	48	1.10
11099427--11099467	8	5.2	8	85	2	57	58	0	0	41	0.98
11099431--11099482	26	2.1	24	85	7	68	59	0	0	40	0.97
11099472--11099498	13	2.1	13	100	0	54	51	0	0	48	1.00
11099758--11099815	20	2.8	20	82	15	66	37	1	0	60	1.07
11110886--11110931	21	2.1	22	88	4	67	58	0	0	41	0.98
11110954--11111001	20	2.5	20	78	18	57	47	0	0	52	1.00
11112199--11112241	2	21.5	2	100	0	86	51	0	48	0	1.00
11118841--11118867	12	2.2	12	100	0	54	44	0	0	55	0.99
11118919--11118963	12	3.7	12	79	5	54	55	0	2	42	1.12
11118919--11118962	13	3.5	13	84	6	56	56	0	2	40	1.11
11118918--11118969	13	4.2	12	80	7	50	57	0	1	40	1.10
11123217--11123242	2	13.0	2	100	0	52	50	0	0	50	1.00
11126350--11126388	18	2.2	19	90	9	64	53	0	0	46	1.00
11126800--11126897	34	2.9	33	77	10	92	50	11	3	35	1.54
11127515--11127576	32	1.9	33	90	3	99	37	1	11	50	1.48
11128204--11128331	59	2.2	58	75	8	134	51	0	3	44	1.22
11129314--11129373	6	10.7	6	77	15	58	36	0	0	63	0.95
11129314--11129396	18	4.8	18	75	11	75	42	0	0	57	0.98
11129325--11129410	21	4.3	20	74	12	79	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11129578--11129606	3	10.0	3	92	7	51	31	0	0	68	0.89
11131036--11131084	22	2.2	23	88	3	73	51	0	4	44	1.20
11136388--11136426	13	2.9	13	92	3	60	69	5	2	23	1.21
11136632--11136665	17	2.0	17	88	0	50	47	0	0	52	1.00
11137734--11137791	3	19.3	3	100	0	116	67	0	0	32	0.91
11138089--11138133	20	2.3	20	85	7	58	64	2	0	33	1.06
11140710--11140796	45	1.9	45	97	0	165	39	17	18	25	1.92
11142373--11142445	26	3.0	25	78	6	69	46	8	9	35	1.66
11142462--11142490	14	2.0	15	93	6	51	62	10	0	27	1.28
11146662--11146741	39	2.1	39	95	0	142	37	38	2	21	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91