genome.fa.s201.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  37  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6249335--6249368	4	8.5	4	86	0	50	47	2	2	47	1.32
6249365--6249404	3	13.7	3	94	5	73	65	0	0	35	0.93
6251020--6251479	227	2.0	226	93	0	785	42	13	15	28	1.85
6252196--6252327	67	2.0	67	98	0	255	43	11	13	31	1.79
6255033--6255074	22	1.9	22	85	0	57	33	0	4	61	1.17
6264703--6264757	23	2.6	20	81	13	65	40	0	3	56	1.17
6264704--6264755	22	2.4	22	83	6	70	40	0	3	55	1.18
6264970--6265087	56	2.1	57	95	3	211	32	1	4	61	1.25
6265247--6265289	22	2.0	22	81	9	52	18	2	6	72	1.19
6265393--6265453	24	2.5	24	82	15	72	18	1	3	77	0.99
6265402--6265453	24	2.2	25	86	10	74	17	1	3	76	1.02
6265543--6265588	11	4.1	11	77	22	51	28	0	0	71	0.86
6265540--6265588	17	2.9	16	80	19	55	28	0	0	71	0.86
6265663--6265711	16	3.1	16	76	5	55	46	0	0	53	1.00
6267395--6267422	14	2.0	14	100	0	56	28	14	14	42	1.84
6272499--6272570	24	3.0	24	72	22	69	16	4	6	72	1.23
6273472--6273570	6	16.5	6	77	8	78	18	0	5	76	0.96
6273502--6273571	19	3.9	18	80	14	74	14	0	5	80	0.89
6281039--6281111	36	2.0	36	97	0	137	67	9	8	15	1.42
6284155--6284198	21	2.0	21	86	4	61	59	2	15	22	1.48
6284869--6284967	18	5.3	18	67	14	58	30	19	7	43	1.77
6285433--6285575	44	3.3	41	74	9	106	29	13	19	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6285769--6285796	8	3.5	8	100	0	56	25	10	25	39	1.87
6285869--6285951	19	4.4	19	76	13	73	15	2	7	74	1.14
6285869--6285929	18	3.3	18	84	11	70	13	3	9	73	1.20
6286989--6287064	26	2.9	26	88	2	107	26	3	14	55	1.57
6286971--6287068	26	3.8	26	77	7	85	25	4	12	58	1.52
6295404--6295452	21	2.3	20	83	10	62	16	36	0	46	1.47
6297343--6297391	20	2.5	19	83	9	71	36	0	2	61	1.08
6297592--6297640	24	2.0	25	84	15	66	40	14	10	34	1.79
6302688--6302727	20	2.1	19	90	4	62	40	0	2	57	1.12
6310873--6310908	2	18.0	2	94	0	63	47	0	2	50	1.15
6312658--6312789	68	2.0	66	85	8	178	26	11	6	56	1.58
6317409--6317485	33	2.3	33	93	0	127	63	11	2	22	1.39
6317428--6317484	16	3.5	16	70	13	53	68	10	3	17	1.33
6320588--6320617	2	15.5	2	93	6	53	50	0	0	50	1.00
6323020--6323063	2	22.0	2	95	0	79	47	0	2	50	1.13
6329019--6329064	21	2.2	21	84	7	58	50	0	0	50	1.00
6329179--6329222	22	2.1	21	84	12	56	56	6	6	29	1.51
6329187--6329236	21	2.3	22	86	3	66	44	8	6	42	1.58
6330951--6330993	18	2.6	16	77	7	50	44	0	4	51	1.22
6332696--6332739	7	6.4	7	89	5	72	84	0	0	15	0.63
6332694--6332739	20	2.3	20	96	0	83	82	0	0	17	0.67
6334915--6334958	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6338794--6338837	22	2.0	22	90	0	70	43	11	11	34	1.77
6341803--6341992	66	2.9	66	91	0	308	23	20	13	42	1.87
6350427--6350461	18	1.9	18	88	0	52	34	14	5	45	1.68
6357632--6357711	41	2.0	41	100	0	160	42	12	18	26	1.86
6362071--6362135	29	2.3	29	84	7	80	35	0	9	55	1.32
6362109--6362161	20	2.6	20	80	11	63	35	1	11	50	1.49
6362508--6362565	27	2.1	27	90	0	89	56	6	1	34	1.36
6364511--6364700	99	1.9	99	87	0	281	38	14	13	34	1.84
6368046--6368089	3	14.7	3	90	0	70	36	2	29	31	1.70
6368509--6368722	114	1.9	114	86	1	304	36	14	23	24	1.93
6368512--6368781	114	2.4	115	81	1	292	38	15	23	22	1.93
6368575--6368840	114	2.3	114	80	0	262	38	16	23	22	1.93
6378848--6378877	14	2.1	15	93	6	53	76	6	10	6	1.15
6379324--6379396	37	2.0	36	84	7	94	61	6	13	17	1.53
6381123--6381166	3	14.7	3	100	0	88	65	0	0	34	0.93
6385325--6385386	23	2.8	22	75	18	65	11	11	6	70	1.32
6386328--6386361	9	3.8	9	88	11	52	50	5	0	44	1.26
6387088--6387143	19	2.9	20	75	15	55	60	3	0	35	1.14
6387800--6387842	23	1.9	23	85	4	61	76	6	0	16	0.99
6392002--6392044	3	14.3	3	100	0	86	32	0	0	67	0.91
6394218--6394276	21	2.5	25	71	25	65	30	8	11	49	1.69
6399470--6399519	24	2.0	24	92	3	82	54	2	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6399477--6399529	24	2.2	24	86	0	70	64	1	0	33	1.05
6415406--6415438	13	2.4	14	90	10	50	75	0	6	18	1.00
6425926--6426070	4	36.8	4	68	20	58	26	2	2	67	1.18
6426034--6426113	29	2.8	28	72	10	74	22	2	3	71	1.14
6426040--6426073	10	3.3	10	87	4	50	20	0	0	79	0.73
6427073--6427127	13	4.2	13	78	2	56	16	1	0	81	0.77
6427074--6427175	16	6.6	16	69	18	56	20	2	2	73	1.09
6427240--6427885	59	10.9	57	85	7	723	45	7	13	34	1.70
6427240--6427887	178	3.7	173	86	7	858	44	7	12	34	1.71
6429580--6429615	1	36.0	1	88	0	54	0	0	5	94	0.31
6432388--6432421	15	2.3	15	89	0	50	38	0	20	41	1.53
6435359--6435400	2	21.0	2	95	0	75	50	0	2	47	1.14
6437443--6437505	30	2.1	31	87	3	92	41	4	23	30	1.75
6443220--6443267	21	2.4	20	79	6	53	58	18	8	14	1.61
6443225--6443265	21	2.0	21	85	4	57	53	19	9	17	1.70
6444627--6444666	21	1.9	21	89	0	62	42	7	5	45	1.54
6451145--6451279	46	2.9	46	82	1	153	40	11	13	34	1.80
6451608--6451849	76	3.2	76	82	5	249	26	19	21	33	1.96
6451709--6451764	22	2.5	24	80	13	57	30	19	23	26	1.98
6451810--6451855	23	2.0	23	91	0	74	32	15	21	30	1.94
6451969--6452014	23	2.0	23	86	0	65	30	15	21	32	1.94
6451758--6452123	163	2.2	162	80	5	398	28	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6452355--6452404	15	3.4	14	78	8	55	4	16	0	80	0.87
6452330--6452385	20	2.6	21	81	13	62	3	21	1	73	1.08
6453201--6453249	17	2.9	17	85	11	57	6	10	2	81	0.94
6457539--6457573	16	2.1	17	89	5	54	0	5	11	82	0.82
6464641--6464707	19	3.6	19	86	4	93	40	14	7	37	1.75
6464771--6465217	223	2.0	226	89	4	697	36	12	10	40	1.78
6466017--6466511	251	2.0	251	95	0	882	31	15	19	33	1.93
6468390--6468495	54	2.0	54	98	0	203	30	17	13	38	1.88
6468526--6468556	6	5.2	6	92	0	53	0	19	32	48	1.49
6469300--6469347	7	6.9	7	92	0	78	43	18	0	37	1.51
6476797--6477332	201	2.7	199	80	3	601	35	12	10	41	1.77
6477317--6477379	31	2.0	31	96	0	117	25	9	15	49	1.75
6478332--6478366	12	2.9	12	86	0	52	85	0	11	2	0.69
6480023--6480061	18	2.2	17	90	4	60	38	17	10	33	1.84
6481214--6481251	3	12.7	3	94	0	67	31	2	0	65	1.06
6481286--6481324	20	2.0	20	89	0	60	66	0	15	17	1.25
6484122--6484183	26	2.4	26	80	0	70	24	20	20	33	1.97
6484978--6485111	11	12.8	10	67	23	55	73	3	2	20	1.10
6484978--6485074	17	5.9	17	67	20	57	72	4	3	20	1.15
6485025--6485113	6	14.8	6	74	17	62	76	2	1	20	0.96
6485024--6485113	19	4.7	18	77	18	76	76	2	1	20	0.95
6485034--6485102	34	2.0	34	83	10	88	73	1	1	23	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485912--6486044	5	26.0	5	76	10	54	63	3	0	33	1.09
6486067--6486123	5	10.6	5	82	14	69	56	1	1	40	1.20
6485912--6486123	10	20.9	10	77	14	186	59	3	1	35	1.25
6485912--6486155	3	89.7	3	65	27	84	61	3	2	33	1.25
6492380--6492869	244	2.0	244	92	0	818	38	9	31	20	1.84
6494802--6494835	15	2.3	15	89	0	50	29	20	2	47	1.65
6504416--6504476	13	4.6	13	74	11	61	26	6	21	45	1.76
6504416--6504473	27	2.2	27	81	12	75	24	5	22	48	1.71
6506760--6506845	7	11.7	7	73	18	50	11	3	6	77	1.08
6506816--6506861	16	2.9	15	81	9	56	8	8	8	73	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91