genome.fa.s201.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  43  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7305370--7306422	533	2.0	525	80	6	1186	39	8	9	41	1.69
7305642--7306646	522	1.9	516	79	7	1131	39	8	10	42	1.69
7306207--7307197	182	5.6	179	77	8	854	41	8	9	40	1.68
7306744--7307075	167	2.0	168	85	5	449	42	8	9	40	1.66
7307090--7307486	153	2.8	138	81	12	478	38	8	9	43	1.67
7307172--7307478	153	2.0	152	98	0	596	37	8	10	43	1.69
7307568--7309238	181	9.3	181	75	8	1253	41	8	9	41	1.66
7308561--7308593	17	2.0	17	88	5	50	51	0	9	39	1.34
7307371--7309185	531	3.4	530	77	8	1704	41	7	8	41	1.66
7309028--7309441	213	1.9	214	91	2	681	41	8	8	41	1.66
7309589--7309637	16	2.8	18	75	15	57	44	8	8	38	1.64
7309447--7310605	178	6.5	176	74	8	821	40	8	9	41	1.68
7309493--7310269	362	2.2	359	80	6	815	41	8	9	40	1.68
7312682--7312744	30	2.1	30	96	0	117	36	19	3	41	1.67
7317430--7317484	21	2.6	21	82	0	65	20	18	29	32	1.96
7317630--7317681	20	2.6	20	100	0	104	25	11	44	19	1.84
7317929--7322597	182	25.8	180	71	10	2131	39	8	10	42	1.69
7317906--7319115	536	2.3	539	81	6	1332	39	7	9	42	1.67
7319177--7319694	176	2.9	177	79	6	435	39	6	10	43	1.65
7318174--7321364	362	8.9	357	71	9	1055	39	8	10	42	1.69
7321521--7321654	67	2.0	67	85	4	182	47	8	11	32	1.69
7321587--7322591	181	5.6	178	75	9	783	38	8	10	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7322618--7324098	181	8.3	180	76	7	1144	42	8	8	40	1.66
7323213--7323264	18	2.9	18	75	11	54	50	1	3	44	1.31
7322976--7323299	166	2.0	165	85	3	436	43	6	8	41	1.61
7324138--7329574	181	30.4	179	75	8	3522	40	7	9	42	1.66
7324138--7329567	717	7.6	714	74	10	3613	40	7	9	42	1.66
7324138--7329574	361	15.2	356	74	8	2945	40	7	9	42	1.66
7330305--7332163	182	10.4	180	71	11	643	39	8	9	42	1.68
7332155--7332195	17	2.4	17	91	0	64	29	4	12	53	1.58
7332202--7332546	181	1.9	181	83	4	455	41	6	9	41	1.64
7332495--7332755	144	1.8	145	85	8	372	41	6	8	42	1.62
7332880--7336265	539	6.3	539	75	9	2289	41	8	8	41	1.66
7332880--7336265	181	18.9	176	74	9	1960	41	8	8	41	1.66
7336199--7336362	86	1.9	87	83	3	215	40	6	6	46	1.55
7336268--7336725	180	2.6	177	79	8	439	42	7	7	42	1.62
7336832--7336893	23	2.8	23	82	4	74	46	8	9	35	1.66
7337051--7337177	44	2.9	43	76	6	121	45	8	6	39	1.60
7337108--7337225	44	2.7	44	81	3	132	49	8	4	38	1.53
7337107--7337210	22	4.8	21	79	2	82	49	8	3	38	1.52
7337073--7337200	66	1.9	66	81	12	156	46	10	6	36	1.63
7337360--7337442	22	4.0	22	72	13	70	50	7	6	36	1.55
7337448--7337513	22	3.0	21	77	4	60	43	4	10	40	1.59
7337497--7337557	24	2.5	24	79	10	63	42	3	14	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7342159--7342239	40	2.0	40	87	0	117	38	11	14	35	1.82
7346438--7346490	27	2.0	27	100	0	106	18	15	18	47	1.83
7350982--7351087	12	9.7	11	73	20	66	48	2	1	47	1.27
7351123--7351196	15	4.8	15	74	21	55	56	2	2	37	1.28
7352107--7352158	26	2.0	26	85	3	70	55	0	0	44	0.99
7352869--7352934	25	2.6	25	80	13	73	51	1	0	46	1.10
7352889--7352931	9	4.8	9	80	11	52	51	0	0	48	1.00
7352889--7352931	18	2.4	18	88	7	61	51	0	0	48	1.00
7353313--7353389	31	2.5	29	76	21	77	45	0	5	49	1.24
7353339--7353405	23	2.9	23	78	12	57	46	1	4	47	1.31
7354110--7354142	14	2.4	14	90	5	50	45	6	0	48	1.27
7354290--7354359	34	2.0	35	83	8	90	41	2	1	54	1.24
7354355--7354404	28	1.9	26	84	15	68	62	6	0	32	1.20
7354597--7354647	21	2.5	20	83	6	57	35	0	3	60	1.15
7354867--7354911	19	2.4	19	81	7	56	40	0	2	57	1.11
7354857--7354897	16	2.5	17	80	7	50	41	2	2	53	1.27
7354869--7354913	16	2.7	18	80	16	53	40	0	2	57	1.11
7355030--7355078	19	2.7	18	75	9	55	44	2	2	51	1.24
7355252--7355332	27	2.9	27	78	10	92	44	2	3	49	1.33
7355241--7355326	14	6.0	15	68	14	56	47	2	3	46	1.32
7355647--7355681	7	4.9	7	86	6	52	40	2	0	57	1.14
7355777--7355816	20	2.0	20	85	0	53	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7355816--7355854	19	2.1	19	85	9	53	61	0	0	38	0.96
7356041--7356126	12	6.9	13	67	21	51	45	0	1	53	1.07
7356057--7356118	21	3.0	20	72	25	56	46	0	1	51	1.10
7356037--7356141	32	3.3	31	80	10	104	45	0	1	51	1.18
7356482--7356537	21	2.6	22	78	15	64	55	1	3	39	1.28
7357067--7357132	34	2.0	33	82	8	80	50	3	0	46	1.16
7357148--7357255	14	7.6	14	66	17	53	45	1	1	50	1.23
7357233--7357291	30	2.0	29	83	9	75	35	0	6	57	1.25
7357458--7357496	12	3.3	12	85	3	53	48	2	0	48	1.15
7358065--7358174	22	4.9	22	72	17	68	49	2	1	46	1.26
7358220--7358330	24	4.6	24	75	11	86	51	0	2	45	1.21
7358527--7358568	13	3.4	13	80	12	61	47	7	0	45	1.30
7358539--7358589	21	2.5	20	77	6	57	45	5	0	49	1.26
7358899--7358944	14	3.2	14	78	6	56	50	2	2	45	1.26
7359555--7359892	182	1.9	181	85	6	479	42	10	7	39	1.67
7359958--7360068	21	5.1	21	68	24	54	47	0	1	49	1.18
7360362--7360690	135	2.4	135	93	2	554	45	10	7	36	1.68
7360855--7360911	20	2.9	19	72	10	53	47	0	3	49	1.18
7361071--7361117	22	2.1	22	84	0	58	59	2	2	36	1.21
7361257--7361335	11	7.4	11	71	16	58	40	2	1	55	1.21
7361287--7361323	17	2.2	17	90	0	56	45	0	0	54	1.00
7361255--7361389	50	2.6	54	76	13	122	45	2	0	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7361309--7361379	13	5.6	13	77	9	58	49	2	0	47	1.16
7361357--7361407	19	2.6	19	75	12	50	50	0	0	49	1.00
7361441--7361508	36	1.9	34	82	11	84	45	1	4	48	1.31
7361656--7361705	21	2.3	21	86	3	73	42	2	2	54	1.23
7361625--7361766	15	10.4	14	66	27	51	50	2	1	46	1.22
7361789--7361822	16	2.0	16	88	11	50	55	0	0	44	0.99
7362274--7362321	16	3.0	16	79	11	62	50	2	2	45	1.25
7362523--7362563	8	5.2	8	80	14	50	51	0	0	48	1.00
7362523--7362575	23	2.3	23	84	15	65	49	0	1	49	1.12
7363105--7363133	13	2.1	14	93	6	51	48	0	0	51	1.00
7363368--7363408	17	2.5	17	84	7	50	46	2	2	48	1.28
7363397--7363438	14	3.2	12	84	15	57	45	0	0	54	0.99
7363736--7363772	20	1.9	19	89	10	58	51	0	0	48	1.00
7363745--7363809	32	2.0	33	82	8	80	55	0	0	44	0.99
7363773--7363820	20	2.5	20	86	3	62	60	0	0	39	0.97
7363780--7363829	20	2.5	20	75	15	59	60	0	0	40	0.97
7363796--7363843	12	4.0	12	76	10	53	56	0	0	43	0.99
7364039--7364074	15	2.4	15	90	0	54	52	0	0	47	1.00
7364045--7364098	15	3.7	15	82	7	60	53	0	0	46	1.00
7364357--7364408	27	1.9	27	84	7	70	55	0	0	44	0.99
7364356--7364429	36	2.0	38	84	10	100	51	0	1	47	1.09
7364586--7364642	13	4.5	13	76	12	64	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7364764--7365613	184	4.8	183	77	8	596	42	8	9	40	1.67
7366022--7366061	20	2.0	21	90	5	64	42	0	5	52	1.23
7366034--7366080	12	3.9	12	77	5	51	44	0	2	53	1.12
7366944--7366989	10	4.3	10	83	10	56	54	2	0	43	1.12
7366944--7367007	17	3.8	17	74	13	53	54	3	1	40	1.25
7368105--7368153	17	3.0	16	83	16	57	57	0	0	42	0.99
7368101--7368160	22	2.7	22	82	5	68	58	0	0	41	0.98
7368287--7368311	13	1.9	13	100	0	50	40	8	0	52	1.31
7368388--7368449	31	2.0	31	81	6	72	45	4	1	48	1.33
7368515--7368581	23	2.8	26	78	17	81	47	0	1	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91