genome.fa.s201.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  72  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11935372--11935437	22	3.0	22	82	4	87	53	0	9	37	1.33
11935772--11936012	21	11.6	21	69	10	138	46	12	8	32	1.72
11936090--11936120	3	10.3	3	92	0	53	32	3	0	64	1.09
11936092--11936123	15	2.1	15	100	0	64	34	6	0	59	1.23
11936119--11936156	3	12.7	3	100	0	76	34	31	0	34	1.58
11936774--11936813	21	1.9	21	89	0	62	52	2	2	42	1.28
11936795--11936846	25	2.0	26	92	3	88	48	5	9	36	1.60
11937579--11937611	12	2.6	13	90	4	50	30	6	9	54	1.56
11940543--11940573	14	2.3	13	94	5	53	25	0	0	74	0.82
11942903--11942990	24	3.7	24	65	17	58	37	1	1	60	1.12
11943012--11943072	25	2.5	22	76	21	59	42	1	0	55	1.09
11943229--11943258	3	10.0	3	92	0	51	33	30	0	36	1.58
11943261--11943326	3	22.0	3	93	0	114	31	0	3	65	1.08
11956730--11956799	22	3.3	20	78	20	72	50	8	7	34	1.61
11956846--11956928	11	7.8	10	72	19	53	62	4	2	30	1.28
11958363--11958501	22	6.4	22	81	5	113	53	2	2	40	1.30
11958387--11958511	11	11.4	11	73	9	94	56	3	1	39	1.25
11958354--11958467	33	3.5	33	78	3	113	52	0	3	42	1.24
11958769--11958810	22	1.9	22	85	9	59	57	2	11	28	1.47
11959834--11959876	21	2.0	21	95	0	77	34	4	6	53	1.49
11960783--11960861	21	3.8	20	80	9	86	46	8	7	36	1.64
11960783--11960947	22	7.8	22	70	13	89	47	7	9	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11961034--11961104	22	3.3	22	80	4	81	47	7	8	36	1.61
11961007--11961104	43	2.2	44	78	1	108	48	7	8	35	1.60
11961397--11961454	20	2.8	20	87	7	73	53	3	5	37	1.40
11961400--11961478	22	3.7	21	80	14	72	56	5	2	35	1.35
11961639--11961681	22	2.0	22	85	0	59	46	9	6	37	1.63
11961692--11961773	21	3.9	21	77	4	67	51	4	6	37	1.48
11962165--11962252	22	4.0	23	70	12	76	47	2	10	39	1.50
11962162--11962269	22	4.9	22	72	12	71	50	2	9	37	1.49
11962176--11962281	44	2.4	44	81	7	119	47	3	10	38	1.56
11962735--11962760	2	13.0	2	100	0	52	50	0	0	50	1.00
11964197--11964241	22	2.0	22	95	0	81	44	8	15	31	1.77
11968939--11968990	23	2.4	21	87	6	77	57	1	3	36	1.28
11968926--11969075	66	2.3	65	77	11	153	49	4	8	37	1.55
11968876--11969012	44	3.1	43	72	8	125	49	5	8	37	1.54
11968844--11969012	22	7.7	22	66	11	78	49	5	7	37	1.53
11969102--11969221	22	5.6	22	75	9	104	50	6	9	34	1.61
11969409--11969513	44	2.4	44	82	6	124	43	5	12	38	1.66
11969440--11969537	22	4.5	22	84	0	97	42	7	11	38	1.68
11969437--11969537	44	2.3	44	84	3	123	43	6	10	38	1.67
11969545--11969587	22	2.0	22	90	9	70	46	2	11	39	1.53
11969576--11969728	44	3.3	44	67	19	121	39	6	11	42	1.67
11969462--11969771	96	3.2	100	81	8	277	42	5	10	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11969607--11969657	22	2.3	22	83	12	61	39	7	13	39	1.74
11969537--11969662	66	1.9	66	81	15	154	42	5	10	42	1.62
11969439--11969684	118	2.1	117	80	7	266	42	6	10	40	1.65
11969666--11969845	22	8.2	22	73	11	93	43	5	11	40	1.63
11970245--11970413	22	7.9	22	71	15	90	47	7	9	34	1.65
11970349--11970458	44	2.5	44	83	2	141	50	8	8	32	1.61
11970584--11970634	21	2.4	21	83	3	66	45	0	13	41	1.44
11970838--11970877	20	1.9	22	90	10	66	52	2	5	40	1.37
11971488--11971592	44	2.4	44	77	3	113	48	7	8	35	1.62
11971600--11971799	22	9.0	21	69	13	98	50	4	9	36	1.54
11971574--11971724	67	2.3	66	78	5	153	52	4	7	35	1.50
11971976--11972026	22	2.3	22	75	0	57	50	5	7	35	1.55
11972040--11972210	44	3.9	44	74	9	120	46	4	9	39	1.56
11972068--11972210	22	6.5	22	70	7	103	46	3	9	39	1.54
11972465--11972504	21	1.9	21	89	0	62	52	2	2	42	1.28
11972486--11972537	25	2.0	26	92	3	88	48	5	9	36	1.60
11972936--11974340	631	2.3	618	89	3	2075	40	13	11	34	1.81
11975169--11975200	7	4.7	7	96	3	57	9	0	0	90	0.45
11977602--11977635	16	2.0	16	88	11	50	52	0	0	47	1.00
11979162--11979214	22	2.4	22	78	9	63	45	3	3	47	1.39
11979163--11979209	23	2.1	22	88	4	67	48	4	4	42	1.42
11981704--11981732	15	1.9	15	100	0	58	17	13	41	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11986264--11986296	18	1.9	17	88	11	50	75	0	21	3	0.93
11988207--11988291	3	31.0	3	76	17	78	36	4	0	58	1.19
11988211--11988291	10	7.5	10	90	2	72	37	4	0	58	1.20
11988201--11988250	20	2.7	19	84	9	59	38	8	0	54	1.30
11988171--11988291	18	7.2	16	76	12	86	35	6	0	57	1.31
11989111--11989154	8	5.2	8	81	8	52	18	0	2	79	0.83
11989080--11989162	12	7.1	11	70	20	53	18	2	3	75	1.05
11989119--11989203	38	2.2	39	79	12	95	21	3	4	70	1.21
11989105--11989168	31	2.1	30	82	8	76	18	1	4	75	1.06
11989421--11989468	6	8.2	6	86	4	71	83	2	2	12	0.83
11989611--11989746	39	3.4	39	73	13	139	49	5	8	36	1.56
11989613--11989670	23	2.5	23	77	0	62	55	3	6	34	1.44
11989618--11989707	22	4.0	23	75	7	69	51	6	6	35	1.55
11989608--11989764	83	1.9	82	96	1	287	50	5	7	36	1.55
11989883--11989987	44	2.4	44	85	9	135	49	2	10	37	1.52
11989881--11989987	22	4.9	22	77	12	103	49	2	11	36	1.53
11989905--11990000	22	4.4	22	84	5	115	47	4	9	38	1.55
11989924--11990022	44	2.2	44	87	0	135	46	5	9	39	1.58
11989951--11990026	22	3.5	22	87	0	89	46	6	7	39	1.59
11989958--11990098	74	1.9	74	80	2	167	44	7	7	39	1.62
11990058--11990248	44	4.4	43	72	13	126	43	6	10	39	1.64
11990107--11990248	22	6.6	21	72	16	103	44	5	11	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11990493--11990537	22	2.0	22	82	0	54	48	13	11	26	1.75
11990977--11991022	24	1.9	24	82	8	58	26	2	6	65	1.28
11991487--11991529	16	2.6	16	85	3	50	44	0	0	55	0.99
11992462--11992849	22	18.0	22	72	8	208	47	7	9	36	1.63
11992508--11992717	43	4.9	43	77	5	203	47	8	9	34	1.66
11992528--11992761	65	3.7	62	73	11	154	47	7	9	35	1.64
11993143--11993214	22	3.4	21	82	7	83	50	5	6	37	1.53
11993143--11993222	42	1.9	41	82	7	99	51	6	6	36	1.52
11993256--11993312	30	1.9	30	89	7	89	47	5	7	40	1.53
11993281--11993473	22	8.7	22	68	15	76	44	7	7	40	1.61
11993849--11994106	22	11.6	22	69	12	125	45	5	10	38	1.60
11993905--11994026	44	2.8	44	85	7	151	49	4	9	37	1.54
11993864--11994026	67	2.5	65	80	2	164	47	4	9	38	1.56
11993904--11994112	43	4.7	44	73	9	156	45	4	11	38	1.60
11994090--11994153	32	2.0	33	84	9	87	43	4	14	37	1.66
11994199--11994260	22	2.8	22	76	9	54	43	11	6	38	1.66
11994285--11994355	22	3.3	21	69	13	63	45	7	7	40	1.58
11994386--11994496	22	4.9	23	72	9	93	46	0	11	40	1.46
11994385--11994518	44	3.0	43	73	10	117	49	2	9	38	1.48
11994792--11994863	21	3.4	21	71	5	65	50	13	2	33	1.57
11994798--11994946	42	3.6	41	81	7	158	45	12	7	34	1.69
11994793--11994946	21	7.4	20	66	15	64	44	12	7	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11994956--11995040	21	4.1	21	72	10	77	47	10	9	32	1.70
11994991--11995029	20	1.9	21	89	5	62	43	12	7	35	1.72
11995971--11996003	15	2.1	16	88	5	50	54	12	3	30	1.52
11996056--11996083	3	9.3	3	100	0	56	32	0	0	67	0.91
11998242--11998284	16	2.6	17	85	10	54	81	0	11	6	0.87
11998242--11998284	9	5.1	9	81	13	56	81	0	11	6	0.87
11998954--11999059	55	1.9	55	88	0	158	23	24	10	41	1.85
11999361--11999489	66	2.0	66	87	0	186	18	31	10	38	1.85
11999807--11999930	5	23.2	5	69	11	59	35	7	3	54	1.44
11999854--11999898	17	2.6	18	85	7	65	35	6	2	55	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91