genome.fa.s201.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  22  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3866102--3866137	9	4.0	9	89	10	56	75	0	0	25	0.81
3868659--3868716	20	3.0	18	78	12	53	62	1	0	36	1.06
3871915--3871978	33	1.9	33	84	12	87	20	15	18	45	1.86
3877324--3877387	33	1.9	34	87	3	94	42	18	9	29	1.82
3879227--3879266	2	20.0	2	100	0	80	50	0	0	50	1.00
3882856--3882927	33	2.1	34	82	14	87	52	13	5	27	1.63
3884615--3884669	12	4.9	11	76	23	53	36	0	0	63	0.95
3884640--3884677	16	2.4	16	82	8	51	34	0	0	65	0.93
3884632--3884677	24	1.9	24	95	0	83	34	0	0	65	0.93
3884633--3884679	12	3.8	13	78	13	55	34	0	0	65	0.93
3885753--3885796	20	2.2	20	87	0	61	61	6	0	31	1.22
3887773--3887797	2	12.5	2	100	0	50	52	0	0	48	1.00
3888085--3888199	22	5.3	21	74	4	86	44	4	10	40	1.58
3888444--3888683	21	11.7	20	67	11	85	48	10	6	34	1.64
3888488--3888610	20	6.1	20	73	7	68	51	10	5	32	1.60
3888434--3888588	63	2.5	64	75	4	172	50	10	6	32	1.62
3888815--3888846	2	16.0	2	93	0	55	50	3	0	46	1.17
3890563--3890593	2	15.5	2	100	0	62	51	0	48	0	1.00
3892706--3892763	29	1.9	31	89	6	93	36	3	22	37	1.71
3892714--3892779	29	2.2	28	80	15	71	37	7	21	33	1.82
3898115--3898143	2	14.5	2	100	0	58	48	0	0	51	1.00
3901964--3902119	52	3.0	52	83	3	199	25	23	9	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3909649--3909674	2	13.0	2	100	0	52	50	0	0	50	1.00
3910418--3910465	19	2.5	19	75	0	51	43	0	6	50	1.27
3910486--3910556	29	2.5	29	76	2	81	60	2	2	33	1.26
3910576--3910620	18	2.6	18	82	3	56	53	4	2	40	1.33
3910576--3910619	17	2.6	17	85	7	54	54	2	2	40	1.25
3910672--3910747	20	3.9	19	75	5	62	57	5	2	34	1.35
3910769--3910839	16	4.2	16	72	15	63	23	1	2	71	1.07
3910769--3910839	8	8.5	8	72	14	54	23	1	2	71	1.07
3910912--3910978	21	3.5	18	82	14	73	37	1	4	56	1.29
3910841--3910973	67	2.0	68	79	7	146	34	3	6	55	1.42
3911650--3911696	23	1.9	25	83	12	62	51	0	2	46	1.13
3911801--3911862	32	1.9	32	90	0	97	38	14	4	41	1.67
3914418--3914457	7	5.6	7	84	3	53	62	2	2	32	1.22
3914466--3914496	6	5.3	6	92	7	55	32	0	0	67	0.91
3914466--3914497	11	2.8	11	95	4	55	31	0	0	68	0.90
3914544--3914622	35	2.4	33	85	10	101	62	2	6	29	1.33
3915124--3915164	17	2.4	17	87	0	55	56	2	0	41	1.13
3917741--3917780	7	5.6	7	84	3	53	62	2	0	35	1.09
3917706--3917761	27	2.0	26	83	10	67	48	0	3	48	1.19
3918047--3918082	16	2.3	16	90	4	56	33	0	0	66	0.92
3920241--3920397	52	3.0	51	80	9	183	42	8	22	27	1.82
3925168--3925198	16	2.0	16	93	6	55	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3927851--3928378	264	2.0	264	98	0	1029	39	7	11	42	1.69
3930743--3930913	59	2.9	59	96	0	306	43	14	16	25	1.86
3941778--3941861	34	2.5	33	82	5	89	42	1	4	51	1.30
3942622--3942693	34	2.1	35	89	2	110	38	5	12	43	1.66
3944657--3944720	33	1.9	33	96	0	119	39	4	17	39	1.70
3945872--3945903	15	2.1	15	94	0	55	34	6	0	59	1.23
3946967--3947012	19	2.5	19	82	3	58	0	21	0	78	0.76
3946959--3947025	28	2.3	28	85	10	82	1	20	1	76	0.95
3946959--3947025	29	2.3	27	82	14	73	1	20	1	76	0.95
3949761--3949806	23	2.0	22	83	4	56	69	4	4	21	1.24
3949992--3950042	14	3.6	14	86	2	66	54	0	5	39	1.24
3950007--3950044	15	2.6	15	95	4	69	57	0	5	36	1.21
3952359--3952399	22	2.0	19	86	13	55	0	21	0	78	0.76
3952360--3952397	13	3.0	13	84	3	51	0	18	0	81	0.69
3952360--3952412	23	2.2	24	83	9	65	0	22	0	77	0.77
3952394--3952431	20	1.9	20	88	0	58	2	36	0	60	1.11
3953821--3953865	15	3.0	15	86	0	63	48	40	0	11	1.39
3953883--3953939	30	1.9	30	85	0	78	47	33	1	17	1.58
3953910--3953951	21	2.0	22	95	4	77	52	30	0	16	1.44
3953926--3953966	15	2.7	15	92	0	64	56	26	0	17	1.41
3962421--3962498	41	1.9	41	86	5	113	37	16	16	29	1.91
3963282--3963325	22	2.0	22	86	8	63	29	18	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963077--3963631	239	2.3	242	82	4	656	22	17	17	41	1.90
3963391--3963456	22	3.0	22	90	0	105	28	21	18	31	1.96
3963523--3963566	22	2.0	22	86	0	61	29	18	15	36	1.92
3963413--3963631	110	2.0	110	85	0	294	22	17	17	42	1.89
3963576--3963681	37	2.9	37	79	0	122	20	18	10	50	1.76
3965353--3965393	3	13.7	3	100	0	82	65	0	0	34	0.93
3965583--3965651	28	2.4	29	80	7	70	47	30	1	20	1.59
3965626--3965708	15	5.6	15	72	11	73	45	34	0	19	1.50
3965610--3965708	29	3.4	29	78	13	121	45	34	1	19	1.57
3965611--3965767	59	2.7	58	83	7	187	45	31	1	20	1.62
3965611--3965765	57	2.7	58	84	6	165	45	32	1	20	1.62
3965753--3965794	21	2.0	22	90	4	68	50	30	2	16	1.58
3970105--3970140	18	2.0	18	100	0	72	50	0	33	16	1.46
3970437--3970485	22	2.2	23	88	3	73	48	0	2	48	1.12
3970449--3970486	11	3.5	11	82	13	51	50	0	2	47	1.15
3983821--3983865	21	2.1	22	83	4	56	22	57	0	20	1.40
3986974--3987052	11	6.9	11	71	22	56	63	0	0	36	0.95
3986961--3987036	36	2.1	36	85	2	100	60	0	1	38	1.05
3990847--3990892	22	2.0	22	87	4	65	19	0	4	76	0.96
3990876--3990925	21	2.4	22	77	19	61	36	2	4	58	1.29
3991258--3991300	22	2.0	22	90	0	68	51	11	6	30	1.65
3991206--3991349	73	2.0	71	85	5	191	42	15	10	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3991279--3991580	48	6.2	49	78	9	278	40	18	11	29	1.85
3999759--3999810	19	2.8	18	76	18	54	42	1	3	51	1.31
4001133--4001178	22	2.1	21	84	4	56	45	2	0	52	1.13
4002182--4002213	12	2.6	12	95	5	55	46	0	0	53	1.00
4002500--4002553	25	2.2	25	90	3	83	44	1	0	53	1.11
4003041--4003079	20	1.9	21	89	5	62	46	0	2	51	1.14
4003313--4003368	27	2.0	28	82	3	69	41	3	3	51	1.36
4003460--4003523	29	2.2	29	83	5	76	51	6	1	40	1.36
4010136--4010176	16	2.6	16	84	0	55	65	0	4	29	1.13
4010236--4010266	16	1.9	16	93	0	53	64	0	0	35	0.94
4010236--4010282	23	2.0	24	91	4	78	61	0	0	38	0.96
4016846--4016886	17	2.6	16	85	14	50	29	2	0	68	1.03
4017570--4017649	36	2.1	39	81	6	94	38	2	1	57	1.20
4019948--4019972	1	25.0	1	100	0	50	0	0	0	100	0.00
4020300--4020350	23	2.2	23	82	0	57	54	0	0	45	0.99
4021226--4021250	2	12.5	2	100	0	50	48	0	0	52	1.00
4021513--4021557	22	2.0	22	83	8	56	20	11	4	64	1.42
4022009--4022033	2	12.5	2	100	0	50	52	0	0	48	1.00
4022153--4022191	21	2.0	19	85	14	53	38	0	0	61	0.96
4023901--4023932	15	2.1	15	94	0	55	40	0	3	56	1.15
4024676--4024707	15	2.0	17	88	11	50	43	0	0	56	0.99
4025636--4025672	19	2.0	18	89	5	56	48	2	8	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4028025--4028086	33	1.9	33	90	3	99	40	8	19	32	1.81
4028597--4028631	15	2.3	15	85	14	54	60	8	0	31	1.27
4028601--4028631	14	2.1	15	94	5	55	58	9	0	32	1.31
4029579--4029635	16	3.6	16	80	4	62	57	3	0	38	1.16
4031373--4031408	19	1.9	18	94	5	63	80	0	0	19	0.71
4032694--4032734	20	2.0	20	86	9	57	17	0	17	65	1.27
4035664--4035725	24	2.6	23	66	16	54	59	4	1	33	1.28
4035724--4035756	13	2.4	14	90	10	50	66	6	0	27	1.15
4035741--4035780	21	2.0	21	95	5	73	60	5	12	22	1.52
4037406--4037456	8	7.1	7	77	18	52	70	3	0	25	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91